pycom05g17950

Rho GDP-dissociation inhibitor 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
21042946 .. 21043265
320 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17950.1

Sequence Viewer

Length: 273 bp
ATGGAGGGAGGGAAGAGGGGAGTTGAAGCAGGAGCATCATCGTCTGGTGGGTTTTCATCAGCTGGCGCTGTAAGTGATCAGGGAAGAGGAAGACAAGAAAAGCAGAAGGAAATGGCTGAAAAGCTGAGTGCTTTTTATGATGTTGGAGAAGAAGACGAGGAAGAAGATGATAACAGTAATGGGGTTGCTGCTGATGGTTTTATTCCTGGACCTTTGGTTTCTCTCAAGGAACAGATTGAGAAGGACAAGATTTGGAATTTGAGTTTGTTTTAA

Protein Analysis

91

Amino Acids

9.57

Weight (kDa)

4.36

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 256
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 2 cut(s) 62, 124
AluI AGCT 2 cut(s) 62, 124
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 256
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 209
BbsI GAAGAC 2 cut(s) 97, 159
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 207
BclI TGATCA 1 cut(s) 76
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 44
BpiI GAAGAC 2 cut(s) 97, 159
BpuEI CTTGAG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 117
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 2 cut(s) 8, 79
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 2 cut(s) 97, 159
Cac8I GCNNGC 1 cut(s) 64
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 209
CviJI RGCY 3 cut(s) 62, 116, 124
CviKI_1 RGCY 3 cut(s) 62, 116, 124
DdeI CTNAG 1 cut(s) 125
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 8, 79
EarI CTCTTC 2 cut(s) 8, 79
Eco47I GGWCC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 205
FaiI YATR 1 cut(s) 138
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 69
HhaI GCGC 1 cut(s) 68
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 100, 235
HpyCH4III ACNGT 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 125
HspAI GCGC 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 6 cut(s) 15, 30, 48, 65, 192, 219
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 44
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 7 cut(s) 25, 96, 102, 161, 164, 173, 176
MluCI AATT 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 3 cut(s) 9, 80, 151
MseI TTAA 1 cut(s) 271
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
NdeII GATC 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 62
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 207
SetI ASST 3 cut(s) 64, 126, 214
SfaNI GCATC 1 cut(s) 44
SinI GGWCC 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 176
TasI AATT 1 cut(s) 256
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.