Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014663

Physical Location & Seq

Genomic Coordinates Reverse (-)

19946307 .. 19949094

Gene Structure 2788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G218800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAGCCAGGGTCATCATCAGGAGGGTCTTCAGCTCGTGGTGTTGTGAGTGATCAGGGAAGAGAAGAAAAGCAAAAGGAAATGAGAGAAAAGCTAAGTGAGGTTTGTGGAGTTGGAGAAGAAGAAGAAGAAGAAGATGATGATAAGAGCAATGGGATTGCTTCTGGTTTTGTACCTGGGCCTTTGGTTTCTCTTAAGGAACAGATTGATAAAGACAAGGATGATGAAAGCTTAAGGAGGTGGAAAGAGAAGCTGCTTGGTTGCTTGGAAAACGATTTAAATGGCCAAATGGAACCTGAAGTCAAATTCCACTCCATCGGAATCATCTCCGATGATTTCGAGGAAATCAGTACTCCCTTGCCTGTTGATGAAAATCAGATTGACCGTGTCCTGTTTACACTCAAGGAGGGATCTCGATATCAGCTTAAGCTAACATTTAGTGTTCTGCACAACATTGTTTCAGGCCTCACCTACTCCAACACAGTATGGAAAGGAGGGCTCCAAGTTGATCAGAGCAAAGGAATGTTGGGTACGTTTGCTCCTAACAAAGAACCATATGTGCACACCTTGGAAGAGGAGACAACTCCATCTGGGTTGCTGGCAAGGGGCATTTATTCAGCAAAGCTTAAGTTCGAAGATGATGACCGGAGAAGTCACATGGAACTACAATACGCCTTCGAGATCAAAAAGACAGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

234

Amino Acids

26.06

Weight (kDa)

4.72

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014663)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20900
malus_domestica	MD05G1192500.v1.1 MD10G1179000.v1.1
prunus_persica	Prupe.8G218800_v2.0.a1 Prupe.8G218800_v2.0.a1
pyrus_communis	pycom05g17950
rosa_chinensis	RchiOBHm_Chr6g0287301
rosa_laevigata	RLG00000012503
rosa_multiflora	Rmu_sc0013803.1_g000016
rosa_roxburghii	Rroxscaffold_7G00181560
rosa_rugosa	Rorug06G0186700
rosa_samantha	Rh6AG298100 Rh6BG303600 Rh6CG306400 Rh6CG311700 Rh6DG295300
rosa_wichuraiana	Rw6G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	2 cut(s)	15, 318
AfaI	GTAC	3 cut(s)	174, 352, 532
AflII	CTTAAG	4 cut(s)	194, 232, 425, 626
AjnI	CCWGG	2 cut(s)	7, 175
AluBI	AGCT	8 cut(s)	35, 94, 231, 253, 424, 430, 625, 699
AluI	AGCT	8 cut(s)	35, 94, 231, 253, 424, 430, 625, 699
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	572
Alw44I	GTGCAC	1 cut(s)	560
AlwI	GGATC	1 cut(s)	418
AoxI	GGCC	3 cut(s)	179, 283, 463
ApaLI	GTGCAC	1 cut(s)	560
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	460
AsuII	TTCGAA	1 cut(s)	633
BaeGI	GKGCMC	1 cut(s)	564
BalI	TGGCCA	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	501
BauI	CACGAG	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	2 cut(s)	323, 595
BciT130I	CCWGG	2 cut(s)	9, 177
BclI	TGATCA	2 cut(s)	52, 508
BcoDI	GTCTC	1 cut(s)	572
BfrI	CTTAAG	4 cut(s)	194, 232, 425, 626
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	9, 177
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	3 cut(s)	6, 294, 500
BmrFI	CCNGG	2 cut(s)	9, 177
BpiI	GAAGAC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	386
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	8, 176, 567
BsaWI	WCCGGW	1 cut(s)	645
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 523, 553
Bse3DI	GCAATG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	9, 177
BseDI	CCNNGG	3 cut(s)	8, 176, 567
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	590
BseSI	GKGCMC	1 cut(s)	564
BseXI	GCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	3 cut(s)	181, 285, 465
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	1 cut(s)	646
BsmAI	GTCTC	1 cut(s)	572
BsnI	GGCC	3 cut(s)	181, 285, 465
Bsp119I	TTCGAA	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	501, 564
Bsp143I	GATC	4 cut(s)	52, 410, 508, 681
BspANI	GGCC	3 cut(s)	181, 285, 465
BspLI	GGNNCC	3 cut(s)	6, 294, 500
BspPI	GGATC	1 cut(s)	418
BspT104I	TTCGAA	1 cut(s)	633
BspTI	CTTAAG	4 cut(s)	194, 232, 425, 626
BsrDI	GCAATG	1 cut(s)	157
BssECI	CCNNGG	3 cut(s)	8, 176, 567
BssMI	GATC	4 cut(s)	52, 410, 508, 681
BssSI	CACGAG	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	9, 177
Bst4CI	ACNGT	3 cut(s)	386, 484, 694
Bst6I	CTCTTC	2 cut(s)	55, 567
BstAFI	CTTAAG	4 cut(s)	194, 232, 425, 626
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	4 cut(s)	55, 413, 511, 684
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	4 cut(s)	52, 410, 508, 681
BstNI	CCWGG	2 cut(s)	9, 177
BstSCI	CCNGG	2 cut(s)	7, 175
BstSLI	GKGCMC	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	181, 285, 465
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	3 cut(s)	173, 351, 531
CviAII	CATG	1 cut(s)	658
CviQI	GTAC	3 cut(s)	173, 351, 531
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	4 cut(s)	54, 412, 510, 683
DpnII	GATC	4 cut(s)	52, 410, 508, 681
DraI	TTTAAA	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	55, 567
EarI	CTCTTC	2 cut(s)	55, 567
Eco130I	CCWWGG	1 cut(s)	567
Eco147I	AGGCCT	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	501
Eco32I	GATATC	1 cut(s)	419
Eco57I	CTGAAG	2 cut(s)	15, 318
EcoRII	CCWGG	2 cut(s)	7, 175
EcoRV	GATATC	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	1 cut(s)	661
FaiI	YATR	4 cut(s)	487, 556, 558, 659
FatI	CATG	1 cut(s)	657
FauNDI	CATATG	1 cut(s)	556
FbaI	TGATCA	2 cut(s)	52, 508
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	181, 285, 465
HapII	CCGG	1 cut(s)	646
Hin1II	CATG	1 cut(s)	661
HindIII	AAGCTT	2 cut(s)	229, 623
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	1 cut(s)	646
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	2 cut(s)	396, 562
Hpy188I	TCNGA	4 cut(s)	320, 331, 378, 513
Hpy188III	TCNNGA	3 cut(s)	21, 414, 679
Hpy8I	GTNNAC	2 cut(s)	396, 562
HpyAV	CCTTC	1 cut(s)	685
HpyCH4III	ACNGT	3 cut(s)	386, 484, 694
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	2 cut(s)	448, 562
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	1 cut(s)	661
Ksp22I	TGATCA	2 cut(s)	52, 508
Kzo9I	GATC	4 cut(s)	52, 410, 508, 681
LmnI	GCTCC	3 cut(s)	4, 504, 544
Lsp1109I	GCAGC	1 cut(s)	240
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	4 cut(s)	54, 412, 510, 683
MboI	GATC	4 cut(s)	52, 410, 508, 681
MflI	RGATCY	1 cut(s)	410
MhlI	GDGCHC	2 cut(s)	501, 564
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	1 cut(s)	305
MluNI	TGGCCA	1 cut(s)	285
MmeI	TCCRAC	2 cut(s)	94, 501
MnlI	CCTC	8 cut(s)	17, 94, 231, 334, 400, 476, 488, 568
Mox20I	TGGCCA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	5 cut(s)	195, 233, 278, 426, 627
Msp20I	TGGCCA	1 cut(s)	285
MspCI	CTTAAG	4 cut(s)	194, 232, 425, 626
MspI	CCGG	1 cut(s)	646
MspR9I	CCNGG	2 cut(s)	9, 177
MvaI	CCWGG	2 cut(s)	9, 177
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	4 cut(s)	52, 410, 508, 681
NlaIII	CATG	1 cut(s)	661
NlaIV	GGNNCC	3 cut(s)	6, 294, 500
NmuCI	GTSAC	1 cut(s)	653
NspV	TTCGAA	1 cut(s)	633
PceI	AGGCCT	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	386
PkrI	GCNGC	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	7, 175
PspGI	CCWGG	2 cut(s)	7, 175
PspN4I	GGNNCC	3 cut(s)	6, 294, 500
PspPI	GGNCC	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	410
PsyI	GACNNNGTC	1 cut(s)	386
RsaI	GTAC	3 cut(s)	174, 352, 532
RsaNI	GTAC	3 cut(s)	173, 351, 531
SaqAI	TTAA	5 cut(s)	195, 233, 278, 426, 627
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	4 cut(s)	52, 410, 508, 681
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	1 cut(s)	352
ScrFI	CCNGG	2 cut(s)	9, 177
SduI	GDGCHC	2 cut(s)	501, 564
SfuI	TTCGAA	1 cut(s)	633
SmiI	ATTTAAAT	1 cut(s)	279
SmlI	CTYRAG	5 cut(s)	194, 232, 401, 425, 626
SmoI	CTYRAG	5 cut(s)	194, 232, 401, 425, 626
Sse9I	AATT	1 cut(s)	305
SseBI	AGGCCT	1 cut(s)	465
StuI	AGGCCT	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	7, 175
StyI	CCWWGG	1 cut(s)	567
SwaI	ATTTAAAT	1 cut(s)	279
TaaI	ACNGT	3 cut(s)	386, 484, 694
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	4 cut(s)	339, 415, 633, 678
TasI	AATT	1 cut(s)	305
TatI	WGTACW	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	5 cut(s)	195, 233, 278, 426, 627
Tru9I	TTAA	5 cut(s)	195, 233, 278, 426, 627
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	2 cut(s)	240, 384
Tth111I	GACNNNGTC	1 cut(s)	386
Vha464I	CTTAAG	4 cut(s)	194, 232, 425, 626
VneI	GTGCAC	1 cut(s)	560
XapI	RAATTY	1 cut(s)	305
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.