MD06G1038600.v1.1

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011765
Physical Location & Seq
Reverse (-)
4950808 .. 4956431
5624 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1038600.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGGGGTGCATGTTGTCTCAGGTAGCAGCGAAATTTGCCTTCTTTCCGCCATCTCCACCGACCTACAAGATCCAAAAGCGGGAGCGCGACGGCAAGCTCAGCGCAGTAGCAGCATCGGCCACCACCAACACCACGTCGTTGCCGGCTGTTCCGCCTGATAACAAATCCTTGGACGTGTTGGTGATTGACACAAAGCGGGGGAACAAGATCGTTGCTTTTTATCTGCGAAACCCTTACGCCCGCCTCACTCTGCTTTACTCCCATGGCAATGCTGCTGACCTCGGCCAGCTCTATGACCTCTTTCTCCAGCTCAGCCTCTCTCTGCGCGTCAATCTCATTGGGTATGACTATTCTGGCTATGGAGCCTCTACTGGCAAGCCTAGTGAAAAAAATACATATGCTGACATAGAGGCGGTATATGAGTGCCTTGAGACTGAGTATGGAGTCAGCCAGGAAGATTTGATCTTGTATGGGCAGTCAGTTGGAAGTGGACCAACATTGCACTTGGCAGCTAAGTTGCCAAGGCTGAGGGGTGTAGTTCTGCACAGTGCAATTCTTTCCGGCCTCCGTGTTCTTTGCCATGTGAAATTCAAATTCTGCTTTGACATTTACAAGAACATCAATAAAATTAAGAAAGTGAAGTGCCCCGTGCTAGTAATACATGGTACAGACGATGATATTGTGAATTGGTTACATGGCAATGCGCTGTGGAAAATGGCAAGGGATCCGTATGAGCCTTTGTGGATTAAAGGAGGTGGACACTGCAACTTGGAGCTTTACCCTGATTACATCCGCCATCTTTGCAGGTTTATCCTAGAAATGGAGAACATGACCACAGAAATCCGTCTCAAAAAGATTCGGCAGAATATGCGTTTGCAGAAGAAGAGATCGTGTGCAATGTGTGCAAGCATGTGTTGTAGTATAAAACTCTGCCGACCTAAATGCCCCGAATGTTCAAGGCCAAAGTGTCTAAAATGTCCTCCATGCTGGAAGCCAAAGTGCGTAAAATGTTGTTGGCGTCCGAAATGCCCAAAATGTGCAGGATCAAGCTGCTGCTTTAGAAACGTTAACTGGCGGTGCTGTGGTAGCGGTTTAAACGGCGAGCAGGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLH Hydrolase_4

Protein Analysis

372

Amino Acids

41.63

Weight (kDa)

9.18

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 83 - 186 9.4e-06 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 84 - 184 2.1e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32190 AT1G32190
fragaria_vesca FvH4_5g23110 FvH4_5g23110
malus_domestica MD06G1038600.v1.1 MD16G1270400.v1.1
prunus_persica Prupe.5G027400_v2.0.a1 Prupe.5G027400_v2.0.a1
pyrus_communis pycom06g03240
rosa_chinensis RchiOBHm_Chr7g0211991
rosa_laevigata RLG00000002947
rosa_multiflora Rmu_sc0004869.1_g000006
rosa_roxburghii Rroxscaffold_3G00247220
rosa_rugosa Rorug07G0129900
rosa_samantha Rh7AG262700 Rh7BG256800 Rh7CG279300 Rh7DG269500
rosa_wichuraiana Rw7G022420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 795
AccII CGCG 2 cut(s) 87, 327
AciI CCGC 9 cut(s) 47, 79, 152, 196, 241, 413, 793, 1075, 1089
AclI AACGTT 1 cut(s) 1065
AclWI GGATC 4 cut(s) 64, 719, 732, 1051
AcoI YGGCCR 2 cut(s) 117, 283
AcsI RAATTY 3 cut(s) 32, 587, 593
AcyI GRCGYC 1 cut(s) 1018
AfaI GTAC 1 cut(s) 667
AfiI CCNNNNNNNGG 2 cut(s) 79, 820
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 592, 957
AjiI CACGTC 2 cut(s) 135, 175
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 6 cut(s) 97, 289, 310, 512, 775, 1050
AluI AGCT 6 cut(s) 97, 289, 310, 512, 775, 1050
Alw26I GTCTC 3 cut(s) 21, 425, 851
AlwI GGATC 4 cut(s) 64, 719, 732, 1051
AoxI GGCC 4 cut(s) 117, 283, 562, 959
ApeKI GCWGC 6 cut(s) 26, 110, 272, 509, 1050, 1053
ApoI RAATTY 3 cut(s) 32, 587, 593
AspLEI GCGC 4 cut(s) 87, 104, 327, 706
AspS9I GGNCC 1 cut(s) 491
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 647
BamHI GGATCC 1 cut(s) 724
BbvCI CCTCAGC 1 cut(s) 527
BbvI GCAGC 6 cut(s) 38, 122, 259, 521, 1037, 1040
BccI CCATC 3 cut(s) 58, 804, 1103
BceAI ACGGC 2 cut(s) 106, 1114
BcgI CGANNNNNNTGC 2 cut(s) 924, 958
BciT130I CCWGG 1 cut(s) 452
BcoDI GTCTC 3 cut(s) 21, 425, 851
BfaI CTAG 3 cut(s) 381, 653, 815
BfuAI ACCTGC 1 cut(s) 795
BisI GCNGC 6 cut(s) 27, 111, 273, 510, 1051, 1054
BlpI GCTNAGC 2 cut(s) 98, 311
BlsI GCNGC 6 cut(s) 28, 112, 274, 511, 1052, 1055
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 1 cut(s) 491
BmgBI CACGTC 2 cut(s) 135, 175
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 2 cut(s) 364, 726
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 527
Bpu1102I GCTNAGC 2 cut(s) 98, 311
BpuEI CTTGAG 1 cut(s) 449
BsaHI GRCGYC 1 cut(s) 1018
BsaJI CCNNGG 4 cut(s) 168, 262, 280, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 820
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 2 cut(s) 376, 1076
Bse3DI GCAATG 4 cut(s) 274, 497, 706, 903
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 4 cut(s) 168, 262, 280, 521
BseGI GGATG 2 cut(s) 789, 1114
BseLI CCNNNNNNNGG 2 cut(s) 79, 820
BseMI GCAATG 4 cut(s) 274, 497, 706, 903
BseMII CTCAG 5 cut(s) 32, 112, 325, 426, 518
BseNI ACTGG 2 cut(s) 376, 1076
BseSI GKGCMC 1 cut(s) 647
BseXI GCAGC 6 cut(s) 38, 122, 259, 521, 1037, 1040
BsgI GTGCAG 2 cut(s) 527, 1059
Bsh1236I CGCG 2 cut(s) 87, 327
BshFI GGCC 4 cut(s) 119, 285, 564, 961
BsiSI CCGG 2 cut(s) 143, 561
BslI CCNNNNNNNGG 2 cut(s) 79, 820
BsmAI GTCTC 3 cut(s) 21, 425, 851
BsmBI CGTCTC 1 cut(s) 851
BsnI GGCC 4 cut(s) 119, 285, 564, 961
Bsp1286I GDGCHC 1 cut(s) 647
Bsp143I GATC 6 cut(s) 69, 207, 462, 724, 887, 1043
Bsp1720I GCTNAGC 2 cut(s) 98, 311
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 9 cut(s) 47, 79, 152, 196, 241, 413, 793, 1075, 1089
BspANI GGCC 4 cut(s) 119, 285, 564, 961
BspCNI CTCAG 5 cut(s) 31, 111, 324, 427, 519
BspFNI CGCG 2 cut(s) 87, 327
BspLI GGNNCC 2 cut(s) 364, 726
BspMI ACCTGC 1 cut(s) 795
BspPI GGATC 4 cut(s) 64, 719, 732, 1051
BsrDI GCAATG 4 cut(s) 274, 497, 706, 903
BsrFI RCCGGY 1 cut(s) 142
BsrI ACTGG 2 cut(s) 376, 1076
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 4 cut(s) 168, 262, 280, 521
BssMI GATC 6 cut(s) 69, 207, 462, 724, 887, 1043
BssNI GRCGYC 1 cut(s) 1018
BssT1I CCWWGG 3 cut(s) 168, 262, 521
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 1 cut(s) 878
BstACI GRCGYC 1 cut(s) 1018
BstAPI GCANNNNNTGC 2 cut(s) 868, 902
BstC8I GCNNGC 7 cut(s) 95, 144, 241, 287, 377, 907, 1103
BstDEI CTNAG 6 cut(s) 18, 98, 311, 435, 513, 527
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 2 cut(s) 789, 1114
BstFNI CGCG 2 cut(s) 87, 327
BstHHI GCGC 4 cut(s) 87, 104, 327, 706
BstKTI GATC 6 cut(s) 72, 210, 465, 727, 890, 1046
BstMAI GTCTC 3 cut(s) 21, 425, 851
BstMBI GATC 6 cut(s) 69, 207, 462, 724, 887, 1043
BstMWI GCNNNNNNNGC 8 cut(s) 35, 99, 110, 116, 801, 868, 902, 1086
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 2 cut(s) 13, 913
BstSCI CCNGG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 647
BstUI CGCG 2 cut(s) 87, 327
BstV1I GCAGC 6 cut(s) 38, 122, 259, 521, 1037, 1040
BstX2I RGATCY 2 cut(s) 69, 724
BstYI RGATCY 2 cut(s) 69, 724
BsuRI GGCC 4 cut(s) 119, 285, 564, 961
BtgI CCRYGG 1 cut(s) 262
BtrI CACGTC 2 cut(s) 135, 175
BtsCI GGATG 2 cut(s) 789, 1114
BtsI GCAGTG 1 cut(s) 760
BtsIMutI CAGTG 2 cut(s) 553, 760
BveI ACCTGC 1 cut(s) 795
Cac8I GCNNGC 7 cut(s) 95, 144, 241, 287, 377, 907, 1103
CfoI GCGC 4 cut(s) 87, 104, 327, 706
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 491
CseI GACGC 2 cut(s) 316, 1007
Csp6I GTAC 1 cut(s) 666
CviAII CATG 8 cut(s) 10, 263, 581, 662, 695, 829, 910, 984
CviQI GTAC 1 cut(s) 666
DdeI CTNAG 6 cut(s) 18, 98, 311, 435, 513, 527
DpnI GATC 6 cut(s) 71, 209, 464, 726, 889, 1045
DpnII GATC 6 cut(s) 69, 207, 462, 724, 887, 1043
DraI TTTAAA 1 cut(s) 1095
EaeI YGGCCR 2 cut(s) 117, 283
Eam1104I CTCTTC 1 cut(s) 878
EarI CTCTTC 1 cut(s) 878
EciI GGCGGA 3 cut(s) 36, 141, 782
Eco130I CCWWGG 3 cut(s) 168, 262, 521
Eco47I GGWCC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 450
EcoT14I CCWWGG 3 cut(s) 168, 262, 521
ErhI CCWWGG 3 cut(s) 168, 262, 521
Esp3I CGTCTC 1 cut(s) 851
FaeI CATG 8 cut(s) 13, 266, 584, 665, 698, 832, 913, 987
FatI CATG 8 cut(s) 9, 262, 580, 661, 694, 828, 909, 983
FauI CCCGC 3 cut(s) 72, 189, 248
FauNDI CATATG 1 cut(s) 397
Fnu4HI GCNGC 6 cut(s) 27, 111, 273, 510, 1051, 1054
FokI GGATG 1 cut(s) 776
Fsp4HI GCNGC 6 cut(s) 27, 111, 273, 510, 1051, 1054
FspBI CTAG 3 cut(s) 381, 653, 815
GlaI GCGC 4 cut(s) 86, 103, 326, 705
GluI GCNGC 6 cut(s) 27, 111, 273, 510, 1051, 1054
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 4 cut(s) 119, 285, 564, 961
HapII CCGG 2 cut(s) 143, 561
HgaI GACGC 2 cut(s) 316, 1007
HhaI GCGC 4 cut(s) 87, 104, 327, 706
Hin1I GRCGYC 1 cut(s) 1018
Hin1II CATG 8 cut(s) 13, 266, 584, 665, 698, 832, 913, 987
Hin6I GCGC 4 cut(s) 85, 102, 325, 704
HinP1I GCGC 4 cut(s) 85, 102, 325, 704
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HinfI GANTC 2 cut(s) 444, 856
HpaI GTTAAC 1 cut(s) 1069
HpaII CCGG 2 cut(s) 143, 561
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 3 cut(s) 491, 758, 1069
Hpy188I TCNGA 1 cut(s) 1023
Hpy8I GTNNAC 3 cut(s) 491, 758, 1069
Hpy99I CGWCG 2 cut(s) 92, 139
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 3 cut(s) 134, 174, 1065
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 99, 110, 116, 801, 868, 902, 1086
HpyF3I CTNAG 6 cut(s) 18, 98, 311, 435, 513, 527
HpySE526I ACGT 3 cut(s) 134, 174, 1065
Hsp92I GRCGYC 1 cut(s) 1018
Hsp92II CATG 8 cut(s) 13, 266, 584, 665, 698, 832, 913, 987
HspAI GCGC 4 cut(s) 85, 102, 325, 704
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
KspAI GTTAAC 1 cut(s) 1069
Kzo9I GATC 6 cut(s) 69, 207, 462, 724, 887, 1043
LmnI GCTCC 3 cut(s) 82, 362, 772
Lsp1109I GCAGC 6 cut(s) 38, 122, 259, 521, 1037, 1040
LweI GCATC 1 cut(s) 122
MaeI CTAG 3 cut(s) 381, 653, 815
MaeII ACGT 3 cut(s) 134, 174, 1065
MaeIII GTNAC 1 cut(s) 690
MalI GATC 6 cut(s) 71, 209, 464, 726, 889, 1045
MboI GATC 6 cut(s) 69, 207, 462, 724, 887, 1043
MboII GAAGA 3 cut(s) 467, 892, 895
MflI RGATCY 2 cut(s) 69, 724
MhlI GDGCHC 1 cut(s) 647
MluCI AATT 6 cut(s) 32, 552, 587, 593, 627, 685
MlyI GAGTC 1 cut(s) 453
MmeI TCCRAC 1 cut(s) 463
MroNI GCCGGC 1 cut(s) 142
MseI TTAA 4 cut(s) 630, 747, 1068, 1094
MslI CAYNNNNRTG 2 cut(s) 267, 699
MspI CCGG 2 cut(s) 143, 561
MspR9I CCNGG 1 cut(s) 452
MssI GTTTAAAC 1 cut(s) 1095
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 2 cut(s) 87, 327
MwoI GCNNNNNNNGC 8 cut(s) 35, 99, 110, 116, 801, 868, 902, 1086
NaeI GCCGGC 1 cut(s) 144
NcoI CCATGG 1 cut(s) 262
NdeI CATATG 1 cut(s) 397
NdeII GATC 6 cut(s) 69, 207, 462, 724, 887, 1043
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 8 cut(s) 13, 266, 584, 665, 698, 832, 913, 987
NlaIV GGNNCC 2 cut(s) 364, 726
NmeAIII GCCGAG 1 cut(s) 261
NspI RCATGY 2 cut(s) 13, 913
PdiI GCCGGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 856
PkrI GCNGC 6 cut(s) 28, 112, 274, 511, 1052, 1055
PleI GAGTC 1 cut(s) 452
PmeI GTTTAAAC 1 cut(s) 1095
PpsI GAGTC 1 cut(s) 452
Psp1406I AACGTT 1 cut(s) 1065
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 2 cut(s) 364, 726
PspPI GGNCC 1 cut(s) 491
PsuI RGATCY 2 cut(s) 69, 724
RsaI GTAC 1 cut(s) 667
RsaNI GTAC 1 cut(s) 666
RseI CAYNNNNRTG 2 cut(s) 267, 699
SaqAI TTAA 4 cut(s) 630, 747, 1068, 1094
SatI GCNGC 6 cut(s) 27, 111, 273, 510, 1051, 1054
Sau3AI GATC 6 cut(s) 69, 207, 462, 724, 887, 1043
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 1 cut(s) 647
SfaNI GCATC 1 cut(s) 122
SinI GGWCC 1 cut(s) 491
SmiMI CAYNNNNRTG 2 cut(s) 267, 699
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 6 cut(s) 32, 552, 587, 593, 627, 685
SsiI CCGC 9 cut(s) 47, 79, 152, 196, 241, 413, 793, 1075, 1089
SspMI CTAG 3 cut(s) 381, 653, 815
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 3 cut(s) 168, 262, 521
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 3 cut(s) 137, 177, 1068
TasI AATT 6 cut(s) 32, 552, 587, 593, 627, 685
TfiI GAWTC 1 cut(s) 856
Tru1I TTAA 4 cut(s) 630, 747, 1068, 1094
Tru9I TTAA 4 cut(s) 630, 747, 1068, 1094
TscAI CASTG 2 cut(s) 553, 767
TseI GCWGC 6 cut(s) 26, 110, 272, 509, 1050, 1053
TspGWI ACGGA 3 cut(s) 557, 717, 833
TspRI CASTG 2 cut(s) 553, 767
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 3 cut(s) 32, 587, 593
XceI RCATGY 2 cut(s) 13, 913
XspI CTAG 3 cut(s) 381, 653, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.