RLG00000002947

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011765
Physical Location & Seq
Reverse (-)
42187484 .. 42192735
5252 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002947

Sequence Viewer

Length: 654 bp
ATGCAAATCTTGACTTGCTTGGCTGCTCTGCACAGTCTCCACCTGACAAGCTATGAAGTCATAAACCCATATGCTCGTCTCACTCTGCTTTACTCTCATGGCAATGCTGCTGACCTTGGTCAACTCTATGATCTCTTTGTCCAGCTCAAGGTCGCTCTCAGGGTCAATCTCATTGGATATGACTATTCTGGCTATGGAGCCTCTACTGGCAAGCCAAGTGAGGAAAACACATATGCTGACATAGAGGCAGTATATGAGTGTCTTGAGACCGAATATGGAGTTAGCCAGGAAGATTTGATCTTGTATGGGCAGTCAGTTGGAAGTGGACCAACACTCCACTTGGCATCTAAACTACCAAGACTAAGGGGTGTAGTTCTGCACAGTGCAATTCTCTCCGGCCTTCGTGTTGTCTGCCATGTAAAATTCACATTCTGCTTTGACATTTATAAGAACATCAATAAAATTCGGAAAGTGAAGTGCCCTGTGCTAGTGATACATGGTACAGAAGATGATATTGTGAATTGGTTACATGGCAATGGACTTTGGAAAATGGTTTATCCAAGAAATGGAGAACATAACCACAGAAATCCGTCTCAAAAAGATCCGACAGAACATGCATGTGCACAAGAGATCATGTGCAAGCCTTTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLH Hydrolase_4

Protein Analysis

218

Amino Acids

24.3

Weight (kDa)

6.58

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 26 - 131 1.7e-06 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 29 - 129 9.2e-07 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32190 AT1G32190
fragaria_vesca FvH4_5g23110 FvH4_5g23110
malus_domestica MD06G1038600.v1.1 MD16G1270400.v1.1
prunus_persica Prupe.5G027400_v2.0.a1 Prupe.5G027400_v2.0.a1
pyrus_communis pycom06g03240
rosa_chinensis RchiOBHm_Chr7g0211991
rosa_laevigata RLG00000002947
rosa_multiflora Rmu_sc0004869.1_g000006
rosa_roxburghii Rroxscaffold_3G00247220
rosa_rugosa Rorug07G0129900
rosa_samantha Rh7AG262700 Rh7BG256800 Rh7CG279300 Rh7DG269500
rosa_wichuraiana Rw7G022420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AccB7I CCANNNNNTGG 1 cut(s) 566
AclWI GGATC 1 cut(s) 596
AcsI RAATTY 2 cut(s) 422, 462
AfaI GTAC 1 cut(s) 502
AfiI CCNNNNNNNGG 2 cut(s) 148, 566
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 2 cut(s) 51, 145
AluI AGCT 2 cut(s) 51, 145
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 4 cut(s) 41, 83, 260, 597
Alw44I GTGCAC 1 cut(s) 621
AlwI GGATC 1 cut(s) 596
AoxI GGCC 1 cut(s) 397
ApaLI GTGCAC 1 cut(s) 621
ApeKI GCWGC 2 cut(s) 23, 107
ApoI RAATTY 2 cut(s) 422, 462
AspS9I GGNCC 1 cut(s) 326
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 2 cut(s) 482, 625
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 2 cut(s) 10, 94
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 4 cut(s) 41, 83, 260, 597
BfaI CTAG 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 650
BisI GCNGC 2 cut(s) 24, 108
BlsI GCNGC 2 cut(s) 25, 109
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 1 cut(s) 353
BoxI GACNNNNGTC 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 131, 284
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 566
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 2 cut(s) 109, 541
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 115
BseLI CCNNNNNNNGG 2 cut(s) 148, 566
BseMI GCAATG 2 cut(s) 109, 541
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 211
BseSI GKGCMC 2 cut(s) 482, 625
BseXI GCAGC 2 cut(s) 10, 94
BsgI GTGCAG 2 cut(s) 14, 362
BshFI GGCC 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 148, 566
BsmAI GTCTC 4 cut(s) 41, 83, 260, 597
BsmBI CGTCTC 2 cut(s) 83, 597
BsnI GGCC 1 cut(s) 399
Bso31I GGTCTC 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 482, 625
Bsp143I GATC 4 cut(s) 130, 297, 601, 630
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 596
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 2 cut(s) 109, 541
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 4 cut(s) 130, 297, 601, 630
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 35, 383
BstC8I GCNNGC 2 cut(s) 212, 641
BstDEI CTNAG 2 cut(s) 158, 362
BstKTI GATC 4 cut(s) 133, 300, 604, 633
BstMAI GTCTC 4 cut(s) 41, 83, 260, 597
BstMBI GATC 4 cut(s) 130, 297, 601, 630
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 2 cut(s) 617, 621
BstPAI GACNNNNGTC 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 1 cut(s) 650
BstSLI GKGCMC 2 cut(s) 482, 625
BstV1I GCAGC 2 cut(s) 10, 94
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BsuRI GGCC 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 2 cut(s) 212, 641
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 501
CviAII CATG 7 cut(s) 98, 416, 497, 530, 614, 618, 634
CviJI RGCY 9 cut(s) 23, 51, 145, 192, 200, 214, 285, 399, 643
CviKI_1 RGCY 9 cut(s) 23, 51, 145, 192, 200, 214, 285, 399, 643
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 2 cut(s) 158, 362
DpnI GATC 4 cut(s) 132, 299, 603, 632
DpnII GATC 4 cut(s) 130, 297, 601, 630
Eco130I CCWWGG 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 619
ErhI CCWWGG 1 cut(s) 115
Esp3I CGTCTC 2 cut(s) 83, 597
FaeI CATG 7 cut(s) 101, 419, 500, 533, 617, 621, 637
FatI CATG 7 cut(s) 97, 415, 496, 529, 613, 617, 633
FauNDI CATATG 2 cut(s) 70, 232
Fnu4HI GCNGC 2 cut(s) 24, 108
Fsp4HI GCNGC 2 cut(s) 24, 108
FspBI CTAG 1 cut(s) 488
GluI GCNGC 2 cut(s) 24, 108
HaeIII GGCC 1 cut(s) 399
HapII CCGG 1 cut(s) 396
Hin1II CATG 7 cut(s) 101, 419, 500, 533, 617, 621, 637
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HpaII CCGG 1 cut(s) 396
Hpy166II GTNNAC 3 cut(s) 122, 326, 623
Hpy188I TCNGA 2 cut(s) 468, 606
Hpy188III TCNNGA 2 cut(s) 10, 263
Hpy8I GTNNAC 3 cut(s) 122, 326, 623
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 2 cut(s) 35, 383
HpyCH4V TGCA 7 cut(s) 4, 31, 379, 386, 617, 623, 639
HpyF3I CTNAG 2 cut(s) 158, 362
Hsp92II CATG 7 cut(s) 101, 419, 500, 533, 617, 621, 637
Kzo9I GATC 4 cut(s) 130, 297, 601, 630
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 9 cut(s) 56, 145, 155, 174, 192, 272, 299, 409, 495
Lsp1109I GCAGC 2 cut(s) 10, 94
LweI GCATC 1 cut(s) 353
MaeI CTAG 1 cut(s) 488
MaeIII GTNAC 1 cut(s) 525
MalI GATC 4 cut(s) 132, 299, 603, 632
MboI GATC 4 cut(s) 130, 297, 601, 630
MboII GAAGA 2 cut(s) 302, 518
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 2 cut(s) 482, 625
MluCI AATT 4 cut(s) 387, 422, 462, 520
MmeI TCCRAC 2 cut(s) 298, 629
MnlI CCTC 3 cut(s) 211, 214, 238
Mph1103I ATGCAT 1 cut(s) 619
MslI CAYNNNNRTG 3 cut(s) 102, 534, 618
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
NdeI CATATG 2 cut(s) 70, 232
NdeII GATC 4 cut(s) 130, 297, 601, 630
NlaIII CATG 7 cut(s) 101, 419, 500, 533, 617, 621, 637
NlaIV GGNNCC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 2 cut(s) 617, 621
PflMI CCANNNNNTGG 1 cut(s) 566
PkrI GCNGC 2 cut(s) 25, 109
PshAI GACNNNNGTC 1 cut(s) 117
PsiI TTATAA 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 326
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 3 cut(s) 102, 534, 618
SatI GCNGC 2 cut(s) 24, 108
Sau3AI GATC 4 cut(s) 130, 297, 601, 630
Sau96I GGNCC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 2 cut(s) 482, 625
SetI ASST 5 cut(s) 45, 53, 117, 147, 153
SfaNI GCATC 1 cut(s) 353
SfcI CTRYAG 1 cut(s) 650
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 3 cut(s) 102, 534, 618
SmlI CTYRAG 2 cut(s) 146, 263
SmoI CTYRAG 2 cut(s) 146, 263
Sse9I AATT 4 cut(s) 387, 422, 462, 520
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 2 cut(s) 35, 383
TaqII GACCGA 1 cut(s) 284
TasI AATT 4 cut(s) 387, 422, 462, 520
TscAI CASTG 1 cut(s) 388
TseI GCWGC 2 cut(s) 23, 107
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 566
VneI GTGCAC 1 cut(s) 621
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 2 cut(s) 422, 462
XceI RCATGY 2 cut(s) 617, 621
XspI CTAG 1 cut(s) 488
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.