pycom06g03240

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011765
Physical Location & Seq
Reverse (-)
4042402 .. 4044383
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g03240.1

Sequence Viewer

Length: 759 bp
ATGGGGTGCATGTTGTCTCAGGTAGCAGCGAAATTTGCCTTCTTTCCGCCATCTCCACCGACCTACAAGATCCAAAAGCGGGAGCGCGACGGCAAGCTCAGCGCAGTAGCAGCATCGGCCACCACCAACACCACGTCGTTGCCGGCTGTTCCGCCTGATAACAAATCCTTGGACGTGTTGGTGATTGACACAAAGCGGGGGAACAAGATCGTTGCTTTTTATCTGCGAAACCCTTACGCCCGCCTCACTCTGCTTTACTCCCATGGCAATGCTGCTGACCTCGGCCAGCTCTATGACCTCTTTCTCCAGCTCAACCTCTCTCTGCGCGTCAATCTCATTGGGTATGACTATTCTGGCTATGGAGCCTCTACTGGCAAGCCTAGTGAAACAAATACATATGCTGACATAGAGGCAGTATATGAGTGCCTTGAGACCGAGTATGGAGTTAGCCAGGAAGATTTGATCTTGTATGGGCAGTCAGTTGGAAGTGGACCAACATTGCACTTGGCAGCTAAGTTGCCAAGGCTGAGGGGTGTAGTTCTGCACAGTGCAATTCTTTCCGGCCTCCGTGTTCTTTGCCATGTGAAATTCAAATTCTGCTTTGACATTTACAAGAACATCAATAAAATTAAGAAAGTGAAGTGCCCCGTGCTAGTAATACATGTAAGTATTTCTTGTCTTCTTGAAATGTTCAAAAATTATATTAATCAAAGATCCCTTTCAGTTTTCCATTGTTTTTGTCTGTTTGAATTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLH Hydrolase_4

Protein Analysis

253

Amino Acids

28.03

Weight (kDa)

9.02

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 81 - 187 1.3e-06 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 84 - 184 6.3e-07 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32190 AT1G32190
fragaria_vesca FvH4_5g23110 FvH4_5g23110
malus_domestica MD06G1038600.v1.1 MD16G1270400.v1.1
prunus_persica Prupe.5G027400_v2.0.a1 Prupe.5G027400_v2.0.a1
pyrus_communis pycom06g03240
rosa_chinensis RchiOBHm_Chr7g0211991
rosa_laevigata RLG00000002947
rosa_multiflora Rmu_sc0004869.1_g000006
rosa_roxburghii Rroxscaffold_3G00247220
rosa_rugosa Rorug07G0129900
rosa_samantha Rh7AG262700 Rh7BG256800 Rh7CG279300 Rh7DG269500
rosa_wichuraiana Rw7G022420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 87, 327
AciI CCGC 5 cut(s) 47, 79, 152, 196, 241
AclWI GGATC 2 cut(s) 64, 708
AcoI YGGCCR 2 cut(s) 117, 283
AcsI RAATTY 4 cut(s) 32, 587, 593, 749
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 2 cut(s) 174, 661
AgsI TTSAA 4 cut(s) 592, 686, 694, 749
AjiI CACGTC 2 cut(s) 135, 175
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 4 cut(s) 97, 289, 310, 512
AluI AGCT 4 cut(s) 97, 289, 310, 512
Alw26I GTCTC 2 cut(s) 21, 425
AlwI GGATC 2 cut(s) 64, 708
AoxI GGCC 3 cut(s) 117, 283, 562
ApeKI GCWGC 4 cut(s) 26, 110, 272, 509
ApoI RAATTY 4 cut(s) 32, 587, 593, 749
AseI ATTAAT 1 cut(s) 705
AspLEI GCGC 3 cut(s) 87, 104, 327
AspS9I GGNCC 1 cut(s) 491
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 647
BbsI GAAGAC 1 cut(s) 671
BbvCI CCTCAGC 1 cut(s) 527
BbvI GCAGC 4 cut(s) 38, 122, 259, 521
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 452
BcoDI GTCTC 2 cut(s) 21, 425
BfaI CTAG 2 cut(s) 381, 653
BisI GCNGC 4 cut(s) 27, 111, 273, 510
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 4 cut(s) 28, 112, 274, 511
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 1 cut(s) 491
BmgBI CACGTC 2 cut(s) 135, 175
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 671
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 527
Bpu1102I GCTNAGC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 449
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 4 cut(s) 168, 262, 280, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 2 cut(s) 274, 497
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 4 cut(s) 168, 262, 280, 521
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 2 cut(s) 274, 497
BseMII CTCAG 3 cut(s) 32, 112, 518
BseNI ACTGG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 647
BseXI GCAGC 4 cut(s) 38, 122, 259, 521
BsgI GTGCAG 1 cut(s) 527
Bsh1236I CGCG 2 cut(s) 87, 327
BshFI GGCC 3 cut(s) 119, 285, 564
BsiSI CCGG 2 cut(s) 143, 561
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 21, 425
BsnI GGCC 3 cut(s) 119, 285, 564
Bso31I GGTCTC 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 647
Bsp143I GATC 4 cut(s) 69, 207, 462, 713
Bsp1720I GCTNAGC 1 cut(s) 98
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 5 cut(s) 47, 79, 152, 196, 241
BspANI GGCC 3 cut(s) 119, 285, 564
BspCNI CTCAG 3 cut(s) 31, 111, 519
BspFNI CGCG 2 cut(s) 87, 327
BspLI GGNNCC 1 cut(s) 364
BspPI GGATC 2 cut(s) 64, 708
BspTNI GGTCTC 1 cut(s) 425
BsrDI GCAATG 2 cut(s) 274, 497
BsrFI RCCGGY 1 cut(s) 142
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 4 cut(s) 168, 262, 280, 521
BssMI GATC 4 cut(s) 69, 207, 462, 713
BssT1I CCWWGG 3 cut(s) 168, 262, 521
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 1 cut(s) 548
BstC8I GCNNGC 5 cut(s) 95, 144, 241, 287, 377
BstDEI CTNAG 4 cut(s) 18, 98, 513, 527
BstDSI CCRYGG 1 cut(s) 262
BstFNI CGCG 2 cut(s) 87, 327
BstHHI GCGC 3 cut(s) 87, 104, 327
BstKTI GATC 4 cut(s) 72, 210, 465, 716
BstMAI GTCTC 2 cut(s) 21, 425
BstMBI GATC 4 cut(s) 69, 207, 462, 713
BstMWI GCNNNNNNNGC 4 cut(s) 35, 99, 110, 116
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 2 cut(s) 13, 665
BstSCI CCNGG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 647
BstUI CGCG 2 cut(s) 87, 327
BstV1I GCAGC 4 cut(s) 38, 122, 259, 521
BstV2I GAAGAC 1 cut(s) 671
BstX2I RGATCY 2 cut(s) 69, 713
BstYI RGATCY 2 cut(s) 69, 713
BsuRI GGCC 3 cut(s) 119, 285, 564
BtgI CCRYGG 1 cut(s) 262
BtrI CACGTC 2 cut(s) 135, 175
BtsIMutI CAGTG 1 cut(s) 553
Cac8I GCNNGC 5 cut(s) 95, 144, 241, 287, 377
CfoI GCGC 3 cut(s) 87, 104, 327
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 491
CseI GACGC 1 cut(s) 316
CviAII CATG 4 cut(s) 10, 263, 581, 662
DdeI CTNAG 4 cut(s) 18, 98, 513, 527
DpnI GATC 4 cut(s) 71, 209, 464, 715
DpnII GATC 4 cut(s) 69, 207, 462, 713
EaeI YGGCCR 2 cut(s) 117, 283
EciI GGCGGA 2 cut(s) 36, 141
Eco130I CCWWGG 3 cut(s) 168, 262, 521
Eco31I GGTCTC 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 450
EcoT14I CCWWGG 3 cut(s) 168, 262, 521
ErhI CCWWGG 3 cut(s) 168, 262, 521
FaeI CATG 4 cut(s) 13, 266, 584, 665
FalI AAGNNNNNCTT 2 cut(s) 658, 690
FatI CATG 4 cut(s) 9, 262, 580, 661
FauI CCCGC 3 cut(s) 72, 189, 248
FauNDI CATATG 1 cut(s) 397
Fnu4HI GCNGC 4 cut(s) 27, 111, 273, 510
Fsp4HI GCNGC 4 cut(s) 27, 111, 273, 510
FspBI CTAG 2 cut(s) 381, 653
GlaI GCGC 3 cut(s) 86, 103, 326
GluI GCNGC 4 cut(s) 27, 111, 273, 510
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 3 cut(s) 119, 285, 564
HapII CCGG 2 cut(s) 143, 561
HgaI GACGC 1 cut(s) 316
HhaI GCGC 3 cut(s) 87, 104, 327
Hin1II CATG 4 cut(s) 13, 266, 584, 665
Hin6I GCGC 3 cut(s) 85, 102, 325
HinP1I GCGC 3 cut(s) 85, 102, 325
HpaII CCGG 2 cut(s) 143, 561
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 491
Hpy188III TCNNGA 1 cut(s) 683
Hpy8I GTNNAC 1 cut(s) 491
Hpy99I CGWCG 2 cut(s) 92, 139
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 2 cut(s) 134, 174
HpyCH4V TGCA 4 cut(s) 9, 502, 544, 551
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 99, 110, 116
HpyF3I CTNAG 4 cut(s) 18, 98, 513, 527
HpySE526I ACGT 2 cut(s) 134, 174
Hsp92II CATG 4 cut(s) 13, 266, 584, 665
HspAI GCGC 3 cut(s) 85, 102, 325
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Kzo9I GATC 4 cut(s) 69, 207, 462, 713
LmnI GCTCC 2 cut(s) 82, 362
Lsp1109I GCAGC 4 cut(s) 38, 122, 259, 521
LweI GCATC 1 cut(s) 122
MaeI CTAG 2 cut(s) 381, 653
MaeII ACGT 2 cut(s) 134, 174
MalI GATC 4 cut(s) 71, 209, 464, 715
MboI GATC 4 cut(s) 69, 207, 462, 713
MboII GAAGA 2 cut(s) 467, 671
MflI RGATCY 2 cut(s) 69, 713
MhlI GDGCHC 1 cut(s) 647
MluCI AATT 7 cut(s) 32, 552, 587, 593, 627, 697, 749
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 8 cut(s) 254, 290, 308, 326, 376, 403, 522, 575
MroNI GCCGGC 1 cut(s) 142
MseI TTAA 2 cut(s) 630, 705
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 2 cut(s) 143, 561
MspR9I CCNGG 1 cut(s) 452
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 2 cut(s) 87, 327
MwoI GCNNNNNNNGC 4 cut(s) 35, 99, 110, 116
NaeI GCCGGC 1 cut(s) 144
NcoI CCATGG 1 cut(s) 262
NdeI CATATG 1 cut(s) 397
NdeII GATC 4 cut(s) 69, 207, 462, 713
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 4 cut(s) 13, 266, 584, 665
NlaIV GGNNCC 1 cut(s) 364
NmeAIII GCCGAG 1 cut(s) 261
NspI RCATGY 2 cut(s) 13, 665
PciI ACATGT 1 cut(s) 661
PdiI GCCGGC 1 cut(s) 144
PkrI GCNGC 4 cut(s) 28, 112, 274, 511
PscI ACATGT 1 cut(s) 661
PshBI ATTAAT 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 491
PsuI RGATCY 2 cut(s) 69, 713
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 2 cut(s) 630, 705
SatI GCNGC 4 cut(s) 27, 111, 273, 510
Sau3AI GATC 4 cut(s) 69, 207, 462, 713
Sau96I GGNCC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 1 cut(s) 647
SfaNI GCATC 1 cut(s) 122
SinI GGWCC 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 7 cut(s) 32, 552, 587, 593, 627, 697, 749
SsiI CCGC 5 cut(s) 47, 79, 152, 196, 241
SspMI CTAG 2 cut(s) 381, 653
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 3 cut(s) 168, 262, 521
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 2 cut(s) 137, 177
TaqII GACCGA 1 cut(s) 449
TasI AATT 7 cut(s) 32, 552, 587, 593, 627, 697, 749
Tru1I TTAA 2 cut(s) 630, 705
Tru9I TTAA 2 cut(s) 630, 705
TscAI CASTG 1 cut(s) 553
TseI GCWGC 4 cut(s) 26, 110, 272, 509
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 491
VspI ATTAAT 1 cut(s) 705
XapI RAATTY 4 cut(s) 32, 587, 593, 749
XceI RCATGY 2 cut(s) 13, 665
XspI CTAG 2 cut(s) 381, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.