Rroxscaffold_3G00247220

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011765
Physical Location & Seq
Reverse (-)
40594456 .. 40601029
6574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247220.1

Sequence Viewer

Length: 729 bp
ATGGGGTGCATGTGCTCTACCTTGGCTGCCAAATTCGCCTTCTTCCCTCCATCTCCTCCCACCTACAAGATCCACAACCGGGAAAACGACGGCAAGCTCAGCGTCGTAGCCTCCGCCTCCACCTCCACATCGTTTCCTCTCCCTCACGCCGACGACAACTCCCTCGACGTTTTGCTCATTGACAACAAACGCGGCAGCAAGATTGTCGCTTTTTATCTCAGAAACCCATACGCTCGTCTCACTCTGCTTTACTCTCATGGCAATGCTGCTGACCTTGGTCAACTCTATGATCTCTTTGTCCAGCTCAAGGTCGCTCTCAGGGTCAATCTCATTGGATACGACTATTCTGGCTATGGAGCCTCTACTGGCAAGCCAAGTGAGGAAAACACATATGCTGACATAGAGGCAGTATATGAGTGCCTTGAGACCGAATATGGAGTTAGCCAGGAAGATTTGATCTTGTATGGGCAGTCAGTTGGAAGTGGACCAACACTCCACTTGGCATCTAAACTACCAAGACTAAGGGGTGTAGTTCTGCACAGTGCAATTCTCTCTGGCCTTCGTGTTGTCTGCCATGTAAAATTCACATTCTGCTTTGACATTTATCAGAACATCAATAAAATTCGGAAAGTGAAGTGCCCTGTGCTAGTGATACATGGTACAGAAGATGATATTGTGAATTGGTTACATGGCAATGGACTTTGGAAAATGGCAAGGGGATCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLH Hydrolase_4

Protein Analysis

242

Amino Acids

26.69

Weight (kDa)

7.64

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 79 - 184 2.2e-06 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 82 - 182 1.4e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32190 AT1G32190
fragaria_vesca FvH4_5g23110 FvH4_5g23110
malus_domestica MD06G1038600.v1.1 MD16G1270400.v1.1
prunus_persica Prupe.5G027400_v2.0.a1 Prupe.5G027400_v2.0.a1
pyrus_communis pycom06g03240
rosa_chinensis RchiOBHm_Chr7g0211991
rosa_laevigata RLG00000002947
rosa_multiflora Rmu_sc0004869.1_g000006
rosa_roxburghii Rroxscaffold_3G00247220
rosa_rugosa Rorug07G0129900
rosa_samantha Rh7AG262700 Rh7BG256800 Rh7CG279300 Rh7DG269500
rosa_wichuraiana Rw7G022420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 192
AciI CCGC 2 cut(s) 114, 192
AclWI GGATC 3 cut(s) 64, 714, 727
AcsI RAATTY 3 cut(s) 32, 581, 621
AfaI GTAC 1 cut(s) 661
AfiI CCNNNNNNNGG 2 cut(s) 79, 307
AjnI CCWGG 1 cut(s) 444
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 2 cut(s) 97, 304
AluI AGCT 2 cut(s) 97, 304
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 242, 419
AlwI GGATC 3 cut(s) 64, 714, 727
AoxI GGCC 1 cut(s) 556
ApeKI GCWGC 3 cut(s) 26, 195, 266
ApoI RAATTY 3 cut(s) 32, 581, 621
AspS9I GGNCC 1 cut(s) 485
AsuC2I CCSGG 1 cut(s) 80
AvaII GGWCC 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 641
BamHI GGATCC 1 cut(s) 719
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 13, 207, 253
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 1 cut(s) 446
BciVI GTATCC 1 cut(s) 329
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 242, 419
BfaI CTAG 1 cut(s) 647
BfuI GTATCC 1 cut(s) 329
BisI GCNGC 4 cut(s) 27, 193, 196, 267
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 4 cut(s) 28, 194, 197, 268
Bme1390I CCNGG 2 cut(s) 80, 446
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 2 cut(s) 358, 721
BmrFI CCNGG 2 cut(s) 80, 446
BmsI GCATC 1 cut(s) 512
BoxI GACNNNNGTC 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 290, 443
BpuMI CCSGG 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 21, 274
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 477, 507
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 307
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 2 cut(s) 268, 700
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 2 cut(s) 21, 274
BseLI CCNNNNNNNGG 2 cut(s) 79, 307
BseMI GCAATG 2 cut(s) 268, 700
BseMII CTCAG 3 cut(s) 112, 232, 331
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 45
BseSI GKGCMC 1 cut(s) 641
BseXI GCAGC 3 cut(s) 13, 207, 253
BsgI GTGCAG 1 cut(s) 521
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 79, 307
BsmAI GTCTC 2 cut(s) 242, 419
BsmBI CGTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 558
Bso31I GGTCTC 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 17, 641
Bsp143I GATC 4 cut(s) 69, 289, 456, 719
Bsp1720I GCTNAGC 1 cut(s) 98
BspACI CCGC 2 cut(s) 114, 192
BspANI GGCC 1 cut(s) 558
BspCNI CTCAG 3 cut(s) 111, 231, 330
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 358, 721
BspPI GGATC 3 cut(s) 64, 714, 727
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 2 cut(s) 268, 700
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 21, 274
BssMI GATC 4 cut(s) 69, 289, 456, 719
BssT1I CCWWGG 2 cut(s) 21, 274
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 95, 371
BstDEI CTNAG 4 cut(s) 98, 218, 317, 521
BstFNI CGCG 1 cut(s) 192
BstKTI GATC 4 cut(s) 72, 292, 459, 722
BstMAI GTCTC 2 cut(s) 242, 419
BstMBI GATC 4 cut(s) 69, 289, 456, 719
BstMWI GCNNNNNNNGC 2 cut(s) 35, 99
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 13
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 78, 444
BstSLI GKGCMC 1 cut(s) 641
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 13, 207, 253
BstX2I RGATCY 2 cut(s) 69, 719
BstYI RGATCY 2 cut(s) 69, 719
BsuI GTATCC 1 cut(s) 329
BsuRI GGCC 1 cut(s) 558
BtsIMutI CAGTG 1 cut(s) 547
Cac8I GCNNGC 2 cut(s) 95, 371
Cfr13I GGNCC 1 cut(s) 485
CseI GACGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 660
CviAII CATG 5 cut(s) 10, 257, 575, 656, 689
CviJI RGCY 9 cut(s) 26, 97, 110, 304, 351, 359, 373, 444, 558
CviKI_1 RGCY 9 cut(s) 26, 97, 110, 304, 351, 359, 373, 444, 558
CviQI GTAC 1 cut(s) 660
DdeI CTNAG 4 cut(s) 98, 218, 317, 521
DpnI GATC 4 cut(s) 71, 291, 458, 721
DpnII GATC 4 cut(s) 69, 289, 456, 719
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 21, 274
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 444
EcoT14I CCWWGG 2 cut(s) 21, 274
ErhI CCWWGG 2 cut(s) 21, 274
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 5 cut(s) 13, 260, 578, 659, 692
FatI CATG 5 cut(s) 9, 256, 574, 655, 688
FauNDI CATATG 2 cut(s) 391, 725
Fnu4HI GCNGC 4 cut(s) 27, 193, 196, 267
Fsp4HI GCNGC 4 cut(s) 27, 193, 196, 267
FspBI CTAG 1 cut(s) 647
GluI GCNGC 4 cut(s) 27, 193, 196, 267
HaeIII GGCC 1 cut(s) 558
HapII CCGG 1 cut(s) 79
HgaI GACGC 1 cut(s) 91
Hin1II CATG 5 cut(s) 13, 260, 578, 659, 692
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HpaII CCGG 1 cut(s) 79
Hpy166II GTNNAC 2 cut(s) 281, 485
Hpy188I TCNGA 3 cut(s) 221, 609, 627
Hpy8I GTNNAC 2 cut(s) 281, 485
Hpy99I CGWCG 4 cut(s) 92, 107, 155, 170
HpyAV CCTTC 2 cut(s) 49, 569
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 9, 538, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 99
HpyF3I CTNAG 4 cut(s) 98, 218, 317, 521
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 5 cut(s) 13, 260, 578, 659, 692
Kzo9I GATC 4 cut(s) 69, 289, 456, 719
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 9 cut(s) 92, 304, 314, 333, 351, 431, 458, 540, 654
Lsp1109I GCAGC 3 cut(s) 13, 207, 253
LweI GCATC 1 cut(s) 512
MaeI CTAG 1 cut(s) 647
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 684
MalI GATC 4 cut(s) 71, 291, 458, 721
MboI GATC 4 cut(s) 69, 289, 456, 719
MboII GAAGA 3 cut(s) 34, 461, 677
MflI RGATCY 2 cut(s) 69, 719
MhlI GDGCHC 2 cut(s) 17, 641
MluCI AATT 5 cut(s) 32, 546, 581, 621, 679
MmeI TCCRAC 1 cut(s) 457
MslI CAYNNNNRTG 2 cut(s) 261, 693
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 80, 446
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 35, 99
NciI CCSGG 1 cut(s) 80
NdeI CATATG 2 cut(s) 391, 725
NdeII GATC 4 cut(s) 69, 289, 456, 719
NlaIII CATG 5 cut(s) 13, 260, 578, 659, 692
NlaIV GGNNCC 2 cut(s) 358, 721
NspI RCATGY 1 cut(s) 13
PkrI GCNGC 4 cut(s) 28, 194, 197, 268
PshAI GACNNNNGTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 358, 721
PspPI GGNCC 1 cut(s) 485
PsuI RGATCY 2 cut(s) 69, 719
RsaI GTAC 1 cut(s) 661
RsaNI GTAC 1 cut(s) 660
RseI CAYNNNNRTG 2 cut(s) 261, 693
SatI GCNGC 4 cut(s) 27, 193, 196, 267
Sau3AI GATC 4 cut(s) 69, 289, 456, 719
Sau96I GGNCC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 80, 446
SduI GDGCHC 2 cut(s) 17, 641
SetI ASST 8 cut(s) 23, 65, 99, 125, 171, 276, 306, 312
SfaNI GCATC 1 cut(s) 512
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 2 cut(s) 261, 693
SmlI CTYRAG 2 cut(s) 305, 422
SmoI CTYRAG 2 cut(s) 305, 422
Sse9I AATT 5 cut(s) 32, 546, 581, 621, 679
SsiI CCGC 2 cut(s) 114, 192
SspMI CTAG 1 cut(s) 647
StyD4I CCNGG 2 cut(s) 78, 444
StyI CCWWGG 2 cut(s) 21, 274
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 165
TaqII GACCGA 1 cut(s) 443
TasI AATT 5 cut(s) 32, 546, 581, 621, 679
TauI GCSGC 1 cut(s) 195
TscAI CASTG 1 cut(s) 547
TseI GCWGC 3 cut(s) 26, 195, 266
TspRI CASTG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 3 cut(s) 32, 581, 621
XceI RCATGY 1 cut(s) 13
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.