Prupe.5G027400_v2.0.a1

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011765
Physical Location & Seq
Forward (+)
3193008 .. 3201625
8618 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G027400.2

Sequence Viewer

Length: 1134 bp
ATGGGGTGCATGTTCTCTCACCTGGCTGCCAAATTTGCCTTCTTTCCTCCATCTCCACCGACCTACAAGATCCAGAAGCGCGACCACGACGGCAAGCTCACCGTCGTCGCCTCCGCCTCCACAACGACGTCTTTGCCTGTTCCTCACGCCGATGACCTTTCCTTGGACGTCTTGCTCATTGACACAAAACGCGGCAACAAGATCGTTGCTTTTTATCTCAGAAACCCATATGCTCGCCTCACTCTGCTTTACTCTCATGGCAATGCTGCTGACCTTGGTCAGCTCTATGACCTCTTTCTCCAGCTCAAGCTCAGTCTCAGAGTCAATCTCATTGGGTACGACTATTCTGGATATGGAGCCTCAACTGGCAAGCCTAGTGAAGAGAATACATATGCTGACATAGAGGCAGTATACGAGTGCCTTGAGACTGAGTATGGAGTTAGCCAGGAAGATTTAATCTTGTATGGGCAGTCAGTTGGAAGTGGACCGACACTGCATTTGGCGGCTAAGTTGCCAAGGCTGAGGGGTGTAGTTCTGCACAGCGCAATTCTTTCTGGTCTTCGTGTGCTGTGCCATGTGAAATTCACATTCTGCGTTGACATTTATAAGAACATCAATAAAATTAAGAAGGTGAAGTGCCCTGTGCTAGTAATACATGGTACAGAAGATGATATTGTGAATTGGTTACATGGCGATGCACTGTGGAAAATGGCAAGGGATGCGTATGAGCCTTTGTGGATTAAAGGAGGTGGACACTGCAACCTGGAGCTTTACCCTGATTACATCCGCCATCTTTGCAGGTTTATCCAAGAAATGGAGAACATAACCACAGAAATCCGTTTAAGAAAGATTTGGCAAAATATGCGTACGCAGAAGAGATCAAGTGCAAGTTGTGCAAAGTGCTGTAGAATTAAACTCTGCTTACCCAAGTGCCCTGAATGTAGAAGACCAAAGTGTGTAAAATGTTGTTCATGGCAGCTAAAATGCCCTGCATGCTGGAAGCCTGGCAGTGTAAAATGTTCCTGGCGACCAAAATGCCTAAAAGGTGCAGAACCAAGCCGCTGCATTAGATGTTTTCACTGGCGGTGCTGCATAGGAACACACAGCGGATTAAATGGGAAGCAGGATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLH Hydrolase_4

Protein Analysis

378

Amino Acids

42.54

Weight (kDa)

9.08

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32190 AT1G32190
fragaria_vesca FvH4_5g23110 FvH4_5g23110
malus_domestica MD06G1038600.v1.1 MD16G1270400.v1.1
prunus_persica Prupe.5G027400_v2.0.a1 Prupe.5G027400_v2.0.a1
pyrus_communis pycom06g03240
rosa_chinensis RchiOBHm_Chr7g0211991
rosa_laevigata RLG00000002947
rosa_multiflora Rmu_sc0004869.1_g000006
rosa_roxburghii Rroxscaffold_3G00247220
rosa_rugosa Rorug07G0129900
rosa_samantha Rh7AG262700 Rh7BG256800 Rh7CG279300 Rh7DG269500
rosa_wichuraiana Rw7G022420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AatII GACGTC 2 cut(s) 131, 171
Acc36I ACCTGC 1 cut(s) 789
AccB7I CCANNNNNTGG 1 cut(s) 814
AccI GTMKAC 1 cut(s) 411
AccII CGCG 2 cut(s) 81, 192
AciI CCGC 7 cut(s) 114, 192, 503, 787, 1060, 1084, 1107
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 2 cut(s) 32, 581
AcyI GRCGYC 2 cut(s) 128, 168
AfaI GTAC 3 cut(s) 338, 661, 868
AfiI CCNNNNNNNGG 2 cut(s) 163, 814
AjnI CCWGG 5 cut(s) 21, 444, 762, 1003, 1022
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 6 cut(s) 97, 283, 304, 310, 769, 979
AluI AGCT 6 cut(s) 97, 283, 304, 310, 769, 979
Alw26I GTCTC 2 cut(s) 320, 419
AlwI GGATC 1 cut(s) 64
ApeKI GCWGC 5 cut(s) 26, 266, 976, 1062, 1089
ApoI RAATTY 2 cut(s) 32, 581
ArsI GACNNNNNNTTYG 2 cut(s) 481, 513
AspLEI GCGC 2 cut(s) 81, 545
AspS9I GGNCC 1 cut(s) 485
AsuHPI GGTGA 3 cut(s) 11, 91, 643
AvaII GGWCC 1 cut(s) 485
BaeGI GKGCMC 2 cut(s) 641, 935
BbsI GAAGAC 2 cut(s) 551, 952
BbvCI CCTCAGC 1 cut(s) 521
BbvI GCAGC 5 cut(s) 13, 253, 988, 1049, 1076
BccI CCATC 3 cut(s) 58, 798, 1121
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 6 cut(s) 115, 149, 184, 218, 1017, 1051
BciT130I CCWGG 5 cut(s) 23, 446, 764, 1005, 1024
BcoDI GTCTC 2 cut(s) 320, 419
BfaI CTAG 2 cut(s) 375, 647
BfmI CTRYAG 1 cut(s) 904
BfuAI ACCTGC 1 cut(s) 789
BisI GCNGC 8 cut(s) 27, 193, 267, 504, 977, 1060, 1063, 1090
BlsI GCNGC 8 cut(s) 28, 194, 268, 505, 978, 1061, 1064, 1091
Bme1390I CCNGG 5 cut(s) 23, 446, 764, 1005, 1024
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 5 cut(s) 23, 446, 764, 1005, 1024
BmsI GCATC 2 cut(s) 685, 709
BoxI GACNNNNGTC 1 cut(s) 276
BpiI GAAGAC 2 cut(s) 551, 952
BplI GAGNNNNNCTC 2 cut(s) 312, 344
BpmI CTGGAG 2 cut(s) 284, 785
Bpu10I CCTNAGC 1 cut(s) 521
BpuEI CTTGAG 2 cut(s) 290, 443
BsaHI GRCGYC 2 cut(s) 128, 168
BsaJI CCNNGG 3 cut(s) 162, 274, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 814
Bse1I ACTGG 2 cut(s) 370, 1085
Bse3DI GCAATG 1 cut(s) 268
BseBI CCWGG 5 cut(s) 23, 446, 764, 1005, 1024
BseDI CCNNGG 3 cut(s) 162, 274, 515
BseGI GGATG 3 cut(s) 724, 783, 1132
BseLI CCNNNNNNNGG 2 cut(s) 163, 814
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 5 cut(s) 232, 325, 331, 420, 512
BseNI ACTGG 2 cut(s) 370, 1085
BseSI GKGCMC 2 cut(s) 641, 935
BseXI GCAGC 5 cut(s) 13, 253, 988, 1049, 1076
BsgI GTGCAG 2 cut(s) 521, 1068
Bsh1236I CGCG 2 cut(s) 81, 192
BsiWI CGTACG 1 cut(s) 866
BslI CCNNNNNNNGG 2 cut(s) 163, 814
BsmAI GTCTC 2 cut(s) 320, 419
Bsp1286I GDGCHC 2 cut(s) 641, 935
Bsp143I GATC 3 cut(s) 69, 201, 878
BspACI CCGC 7 cut(s) 114, 192, 503, 787, 1060, 1084, 1107
BspCNI CTCAG 5 cut(s) 231, 324, 330, 421, 513
BspFNI CGCG 2 cut(s) 81, 192
BspLI GGNNCC 1 cut(s) 358
BspMI ACCTGC 1 cut(s) 789
BspPI GGATC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 268
BsrI ACTGG 2 cut(s) 370, 1085
BssECI CCNNGG 3 cut(s) 162, 274, 515
BssMI GATC 3 cut(s) 69, 201, 878
BssNAI GTATAC 1 cut(s) 412
BssNI GRCGYC 2 cut(s) 128, 168
BssT1I CCWWGG 3 cut(s) 162, 274, 515
Bst1107I GTATAC 1 cut(s) 412
Bst2UI CCWGG 5 cut(s) 23, 446, 764, 1005, 1024
Bst4CI ACNGT 2 cut(s) 103, 702
Bst6I CTCTTC 2 cut(s) 375, 869
BstACI GRCGYC 2 cut(s) 128, 168
BstAPI GCANNNNNTGC 3 cut(s) 719, 862, 893
BstC8I GCNNGC 4 cut(s) 95, 235, 371, 994
BstDEI CTNAG 6 cut(s) 218, 311, 317, 429, 507, 521
BstF5I GGATG 3 cut(s) 724, 783, 1132
BstFNI CGCG 2 cut(s) 81, 192
BstHHI GCGC 2 cut(s) 81, 545
BstKTI GATC 3 cut(s) 72, 204, 881
BstMAI GTCTC 2 cut(s) 320, 419
BstMBI GATC 3 cut(s) 69, 201, 878
BstMWI GCNNNNNNNGC 6 cut(s) 35, 719, 795, 862, 893, 993
BstNI CCWGG 5 cut(s) 23, 446, 764, 1005, 1024
BstNSI RCATGY 2 cut(s) 13, 996
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 5 cut(s) 21, 444, 762, 1003, 1022
BstSFI CTRYAG 1 cut(s) 904
BstSLI GKGCMC 2 cut(s) 641, 935
BstUI CGCG 2 cut(s) 81, 192
BstV1I GCAGC 5 cut(s) 13, 253, 988, 1049, 1076
BstV2I GAAGAC 2 cut(s) 551, 952
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BstZ17I GTATAC 1 cut(s) 412
BtgZI GCGATG 1 cut(s) 708
BtsCI GGATG 3 cut(s) 724, 783, 1132
BtsI GCAGTG 3 cut(s) 491, 754, 1015
BtsIMutI CAGTG 5 cut(s) 491, 698, 754, 1015, 1078
BveI ACCTGC 1 cut(s) 789
Cac8I GCNNGC 4 cut(s) 95, 235, 371, 994
CfoI GCGC 2 cut(s) 81, 545
Cfr13I GGNCC 1 cut(s) 485
Csp6I GTAC 3 cut(s) 337, 660, 867
CviAII CATG 7 cut(s) 10, 257, 575, 656, 689, 972, 993
CviQI GTAC 3 cut(s) 337, 660, 867
DdeI CTNAG 6 cut(s) 218, 311, 317, 429, 507, 521
DpnI GATC 3 cut(s) 71, 203, 880
DpnII GATC 3 cut(s) 69, 201, 878
Eam1104I CTCTTC 2 cut(s) 375, 869
EarI CTCTTC 2 cut(s) 375, 869
EciI GGCGGA 2 cut(s) 103, 776
Eco130I CCWWGG 3 cut(s) 162, 274, 515
Eco47I GGWCC 1 cut(s) 485
EcoRII CCWGG 5 cut(s) 21, 444, 762, 1003, 1022
EcoT14I CCWWGG 3 cut(s) 162, 274, 515
ErhI CCWWGG 3 cut(s) 162, 274, 515
FaeI CATG 7 cut(s) 13, 260, 578, 659, 692, 975, 996
FatI CATG 7 cut(s) 9, 256, 574, 655, 688, 971, 992
FauNDI CATATG 2 cut(s) 229, 391
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 8 cut(s) 27, 193, 267, 504, 977, 1060, 1063, 1090
FokI GGATG 2 cut(s) 731, 770
Fsp4HI GCNGC 8 cut(s) 27, 193, 267, 504, 977, 1060, 1063, 1090
FspBI CTAG 2 cut(s) 375, 647
GlaI GCGC 2 cut(s) 80, 544
GluI GCNGC 8 cut(s) 27, 193, 267, 504, 977, 1060, 1063, 1090
GsuI CTGGAG 2 cut(s) 284, 785
HhaI GCGC 2 cut(s) 81, 545
Hin1I GRCGYC 2 cut(s) 128, 168
Hin1II CATG 7 cut(s) 13, 260, 578, 659, 692, 975, 996
Hin6I GCGC 2 cut(s) 79, 543
HinP1I GCGC 2 cut(s) 79, 543
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 1 cut(s) 321
HphI GGTGA 3 cut(s) 11, 91, 643
Hpy166II GTNNAC 4 cut(s) 412, 485, 598, 752
Hpy188I TCNGA 2 cut(s) 221, 320
Hpy188III TCNNGA 2 cut(s) 73, 348
Hpy8I GTNNAC 4 cut(s) 412, 485, 598, 752
Hpy99I CGWCG 4 cut(s) 92, 107, 110, 130
HpyAV CCTTC 2 cut(s) 49, 622
HpyCH4III ACNGT 2 cut(s) 103, 702
HpyCH4IV ACGT 2 cut(s) 128, 168
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 719, 795, 862, 893, 993
HpyF3I CTNAG 6 cut(s) 218, 311, 317, 429, 507, 521
HpySE526I ACGT 2 cut(s) 128, 168
Hsp92I GRCGYC 2 cut(s) 128, 168
Hsp92II CATG 7 cut(s) 13, 260, 578, 659, 692, 975, 996
HspAI GCGC 2 cut(s) 79, 543
Kzo9I GATC 3 cut(s) 69, 201, 878
LmnI GCTCC 2 cut(s) 356, 766
Lsp1109I GCAGC 5 cut(s) 13, 253, 988, 1049, 1076
LweI GCATC 2 cut(s) 685, 709
MaeI CTAG 2 cut(s) 375, 647
MaeII ACGT 2 cut(s) 128, 168
MaeIII GTNAC 1 cut(s) 684
MalI GATC 3 cut(s) 71, 203, 880
MboI GATC 3 cut(s) 69, 201, 878
MboII GAAGA 6 cut(s) 392, 461, 551, 677, 886, 957
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 2 cut(s) 641, 935
MluCI AATT 6 cut(s) 32, 546, 581, 621, 679, 909
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 457
MseI TTAA 6 cut(s) 455, 624, 741, 842, 912, 1112
MslI CAYNNNNRTG 3 cut(s) 150, 261, 693
MspA1I CMGCKG 2 cut(s) 1062, 1107
MspR9I CCNGG 5 cut(s) 23, 446, 764, 1005, 1024
MvaI CCWGG 5 cut(s) 23, 446, 764, 1005, 1024
MvnI CGCG 2 cut(s) 81, 192
MwoI GCNNNNNNNGC 6 cut(s) 35, 719, 795, 862, 893, 993
NdeI CATATG 2 cut(s) 229, 391
NdeII GATC 3 cut(s) 69, 201, 878
NlaIII CATG 7 cut(s) 13, 260, 578, 659, 692, 975, 996
NlaIV GGNNCC 1 cut(s) 358
NspI RCATGY 2 cut(s) 13, 996
PaeI GCATGC 1 cut(s) 996
Pfl23II CGTACG 1 cut(s) 866
PflMI CCANNNNNTGG 1 cut(s) 814
PkrI GCNGC 8 cut(s) 28, 194, 268, 505, 978, 1061, 1064, 1091
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PshAI GACNNNNGTC 1 cut(s) 276
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 5 cut(s) 21, 444, 762, 1003, 1022
PspGI CCWGG 5 cut(s) 21, 444, 762, 1003, 1022
PspLI CGTACG 1 cut(s) 866
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 1 cut(s) 485
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 3 cut(s) 338, 661, 868
RsaNI GTAC 3 cut(s) 337, 660, 867
RseI CAYNNNNRTG 3 cut(s) 150, 261, 693
SaqAI TTAA 6 cut(s) 455, 624, 741, 842, 912, 1112
SatI GCNGC 8 cut(s) 27, 193, 267, 504, 977, 1060, 1063, 1090
Sau3AI GATC 3 cut(s) 69, 201, 878
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 5 cut(s) 23, 446, 764, 1005, 1024
SduI GDGCHC 2 cut(s) 641, 935
SfaNI GCATC 2 cut(s) 685, 709
SfcI CTRYAG 1 cut(s) 904
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 3 cut(s) 150, 261, 693
SmlI CTYRAG 2 cut(s) 305, 422
SmoI CTYRAG 2 cut(s) 305, 422
SphI GCATGC 1 cut(s) 996
Sse9I AATT 6 cut(s) 32, 546, 581, 621, 679, 909
SsiI CCGC 7 cut(s) 114, 192, 503, 787, 1060, 1084, 1107
SspMI CTAG 2 cut(s) 375, 647
StyD4I CCNGG 5 cut(s) 21, 444, 762, 1003, 1022
StyI CCWWGG 3 cut(s) 162, 274, 515
TaaI ACNGT 2 cut(s) 103, 702
TaiI ACGT 2 cut(s) 131, 171
TaqII GACCGA 1 cut(s) 502
TasI AATT 6 cut(s) 32, 546, 581, 621, 679, 909
TauI GCSGC 3 cut(s) 195, 506, 1062
Tru1I TTAA 6 cut(s) 455, 624, 741, 842, 912, 1112
Tru9I TTAA 6 cut(s) 455, 624, 741, 842, 912, 1112
TscAI CASTG 5 cut(s) 498, 705, 761, 1015, 1085
TseI GCWGC 5 cut(s) 26, 266, 976, 1062, 1089
TspDTI ATGAA 1 cut(s) 960
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 5 cut(s) 498, 705, 761, 1015, 1085
Van91I CCANNNNNTGG 1 cut(s) 814
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 2 cut(s) 32, 581
XceI RCATGY 2 cut(s) 13, 996
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 2 cut(s) 375, 647
ZraI GACGTC 2 cut(s) 129, 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.