RchiOBHm_Chr7g0211991

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011765
Physical Location & Seq
Forward (+)
29201508 .. 29208147
6640 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18966

Sequence Viewer

Length: 1752 bp
ATGGGGTGCATGTGCTCTACCTTGGCTGCCAAGTTCGCCTTCTTCCCTCCATCTCCTCCCACCTACAAGATCCACAACCGGGAAAACGACGGCAAGCTCAGCGTCGTAGCCTCCGCCTCCACCTCCACGTCGTTTCCTCTCCCTCACACCGACGACAACTCCCTCGACGTTTTGCTCATTGACAACAAACGCGGCAGCAAGATTGTCGCTTTTTATCTCAGAAACCCATATGCTCGTCTCACTCTGCTTTATTCTCATGGCAATGCTGCTGACCTTGGTCAACTCTATGATCTCTTTGTCCAGCTCAAGGTCGCTCTCAGGGTCAATCTCATTGGATACGACTATTCTGGCTATGGAGCCTCTACTGGCAAGCCAAGTGAGGAAAACACATATGCTGACATAGAGGCAGTATATGAGTGCCTTGAGACCGAATATGGAGTTAGCCAGGAAGATTTGATCTTGTATGGGCAGTCAGTTGGAAGTGGACCAACACTCCACTTGGCATCTAAACTACCAAGACTAAGGGGTGTAGTTCTGCACAGTGCAATTCTCTCCGGCCTTCGTGTTGTCTGCCATGTAAAATTCACATTCTGCTTTGACATTTATAAGAACATCAATAAAATTCGGAAAGTGAAGTGCCCTGTGCTAGTGATACATGGTACAGAAGATGATATTGTGAATTGGTTACATGGCAATGGACTTTGGAAAATGGCAAGGGATCCGTATGATCCTTTGTGGATTAAAGGAGGTGGGCACTGCAACTTGGAGCTTTACCCTGATTACATCCGCCATCTTTGCAGGTTTATCCAAGAAATGGAGAACATAACCACAGAAATCCGTCTCAAAAAGATCCGACAGAACATGCATGTGCACAAGAGATCATGTGGAAGCCATTGCTGTAGAATTAAAGTCTGCCGACCTAAATGCTTTGAATGTTCGATACCAAAATGTGTAAAATGCTCATGCTGGAAGCCGAAATGCTCCTCATGCTGGAAGCCGAACTGCTCCTCATGCTGGAAGCTGAACTGCTCCTCTTGCTGCAAGCCGAACTGCTCCTCTTGCTGCACGCCGAACTGCTCCTCTTGCTGCAAGCCGAACTGCTCCTCTTGCTGCAAGCCGAACTGCTTCTCTTGCTGCAAGCCGAACTGCTTCTCTTGCTGCAAGCCGAAATGCTCCTCTAGCTGCAAGCCGAAATGCTCCTCTAGCTGCAAGCCGAACTGCTCCTCTTGCTGCAAGCCCAACTGCTCCTCTTGCTGCAAGCCCAACTGCTTCTCTTGCTGCATGCCGAACTGCCTCTCTTGCTGCAAGCCGAACTGCCTCTCTTGCTGCACGCCGAACTGCTTCTCTTGCTGCAAGCCGAACTGCTTCTCTTGCTGCAAGCCGAACTGCTTCTCTTGCTGCAAGCCGAAATGCTTCTCTTGCAGCAAGCCGAAATGCTTCTCTTGCAGCAAGCTGAAATGCTTCTCTTGCTGCAAGCCGAAATGCTTCTCTTGCTGCAAGCCGACATGTTTCTCTTGCTGCAAGCCGAAATGCTTCTCTTGCTGCAAGCCGAAATGCTTCTCTTGCTGGAAGCCGACATGCTTCTCTTGCTGGAAGCCGACATGCTTCTCTTGCTGGAAGCCGAGCTGCATAAAATGTTGCTGGCGGCCCAAATGCCCGAAATGTGCCGGACCAAACTGTTGCATTACATGTTTTCAGTGGCGGTGCTGTGTAGGAGGAACACAAAGTGGGTTAGACAGGGAGGATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLH Hydrolase_4

Protein Analysis

583

Amino Acids

64.86

Weight (kDa)

8.84

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 82 - 182 6.9e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32190 AT1G32190
fragaria_vesca FvH4_5g23110 FvH4_5g23110
malus_domestica MD06G1038600.v1.1 MD16G1270400.v1.1
prunus_persica Prupe.5G027400_v2.0.a1 Prupe.5G027400_v2.0.a1
pyrus_communis pycom06g03240
rosa_chinensis RchiOBHm_Chr7g0211991
rosa_laevigata RLG00000002947
rosa_multiflora Rmu_sc0004869.1_g000006
rosa_roxburghii Rroxscaffold_3G00247220
rosa_rugosa Rorug07G0129900
rosa_samantha Rh7AG262700 Rh7BG256800 Rh7CG279300 Rh7DG269500
rosa_wichuraiana Rw7G022420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
Acc36I ACCTGC 1 cut(s) 789
AccB7I CCANNNNNTGG 1 cut(s) 814
AccII CGCG 1 cut(s) 192
AciI CCGC 5 cut(s) 114, 192, 787, 1645, 1702
AclWI GGATC 5 cut(s) 64, 713, 722, 726, 844
AcsI RAATTY 2 cut(s) 581, 621
AdeI CACNNNGTG 1 cut(s) 1727
AfaI GTAC 1 cut(s) 661
AfiI CCNNNNNNNGG 5 cut(s) 79, 307, 814, 990, 1014
AflIII ACRYGT 2 cut(s) 1505, 1688
AgsI TTSAA 1 cut(s) 932
AjiI CACGTC 1 cut(s) 129
AjnI CCWGG 1 cut(s) 444
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 8 cut(s) 97, 304, 769, 1021, 1182, 1206, 1453, 1626
AluI AGCT 8 cut(s) 97, 304, 769, 1021, 1182, 1206, 1453, 1626
Alw21I GWGCWC 2 cut(s) 17, 873
Alw26I GTCTC 3 cut(s) 242, 419, 845
Alw44I GTGCAC 1 cut(s) 869
AlwI GGATC 5 cut(s) 64, 713, 722, 726, 844
AoxI GGCC 2 cut(s) 556, 1646
ApaLI GTGCAC 1 cut(s) 869
ApoI RAATTY 2 cut(s) 581, 621
AspS9I GGNCC 3 cut(s) 485, 1647, 1670
AsuC2I CCSGG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 485, 1670
BaeGI GKGCMC 3 cut(s) 641, 756, 873
BamHI GGATCC 1 cut(s) 718
Bbv12I GWGCWC 2 cut(s) 17, 873
BccI CCATC 3 cut(s) 58, 798, 1739
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 4 cut(s) 187, 221, 906, 940
BciT130I CCWGG 1 cut(s) 446
BciVI GTATCC 1 cut(s) 329
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 3 cut(s) 242, 419, 845
BfaI CTAG 3 cut(s) 647, 1179, 1203
BfmI CTRYAG 1 cut(s) 898
BfuAI ACCTGC 1 cut(s) 789
BfuI GTATCC 1 cut(s) 329
BlpI GCTNAGC 1 cut(s) 98
Bme1390I CCNGG 2 cut(s) 80, 446
Bme18I GGWCC 2 cut(s) 485, 1670
BmgBI CACGTC 1 cut(s) 129
BmgT120I GGNCC 3 cut(s) 485, 1647, 1670
BmiI GGNNCC 2 cut(s) 358, 720
BmrFI CCNGG 2 cut(s) 80, 446
BmsI GCATC 1 cut(s) 512
BoxI GACNNNNGTC 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 290, 443
BpuMI CCSGG 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 21, 274
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 477, 507
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 307, 814, 990, 1014
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 3 cut(s) 268, 700, 892
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 2 cut(s) 21, 274
BseGI GGATG 2 cut(s) 783, 1750
BseLI CCNNNNNNNGG 5 cut(s) 79, 307, 814, 990, 1014
BseMI GCAATG 3 cut(s) 268, 700, 892
BseMII CTCAG 3 cut(s) 112, 232, 331
BseNI ACTGG 1 cut(s) 370
BseSI GKGCMC 3 cut(s) 641, 756, 873
BsgI GTGCAG 3 cut(s) 521, 1048, 1312
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 558, 1648
BsiHKAI GWGCWC 2 cut(s) 17, 873
BsiSI CCGG 3 cut(s) 79, 555, 1668
BslI CCNNNNNNNGG 5 cut(s) 79, 307, 814, 990, 1014
BsmAI GTCTC 3 cut(s) 242, 419, 845
BsmBI CGTCTC 2 cut(s) 242, 845
BsnI GGCC 2 cut(s) 558, 1648
Bso31I GGTCTC 1 cut(s) 419
Bsp1286I GDGCHC 4 cut(s) 17, 641, 756, 873
Bsp143I GATC 7 cut(s) 69, 289, 456, 718, 727, 849, 878
Bsp1720I GCTNAGC 1 cut(s) 98
BspACI CCGC 5 cut(s) 114, 192, 787, 1645, 1702
BspANI GGCC 2 cut(s) 558, 1648
BspCNI CTCAG 3 cut(s) 111, 231, 330
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 358, 720
BspMI ACCTGC 1 cut(s) 789
BspPI GGATC 5 cut(s) 64, 713, 722, 726, 844
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 3 cut(s) 268, 700, 892
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 21, 274
BssMI GATC 7 cut(s) 69, 289, 456, 718, 727, 849, 878
BssT1I CCWWGG 2 cut(s) 21, 274
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 2 cut(s) 542, 1679
BstDEI CTNAG 4 cut(s) 98, 218, 317, 521
BstF5I GGATG 2 cut(s) 783, 1750
BstFNI CGCG 1 cut(s) 192
BstKTI GATC 7 cut(s) 72, 292, 459, 721, 730, 852, 881
BstMAI GTCTC 3 cut(s) 242, 419, 845
BstMBI GATC 7 cut(s) 69, 289, 456, 718, 727, 849, 878
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 8 cut(s) 13, 865, 869, 1285, 1509, 1581, 1605, 1692
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 78, 444
BstSFI CTRYAG 1 cut(s) 898
BstSLI GKGCMC 3 cut(s) 641, 756, 873
BstUI CGCG 1 cut(s) 192
BstX2I RGATCY 3 cut(s) 69, 718, 849
BstYI RGATCY 3 cut(s) 69, 718, 849
BsuI GTATCC 1 cut(s) 329
BsuRI GGCC 2 cut(s) 558, 1648
BtrI CACGTC 1 cut(s) 129
BtsCI GGATG 2 cut(s) 783, 1750
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 3 cut(s) 547, 754, 1703
BveI ACCTGC 1 cut(s) 789
Cfr13I GGNCC 3 cut(s) 485, 1647, 1670
CseI GACGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 660
CviQI GTAC 1 cut(s) 660
DdeI CTNAG 4 cut(s) 98, 218, 317, 521
DpnI GATC 7 cut(s) 71, 291, 458, 720, 729, 851, 880
DpnII GATC 7 cut(s) 69, 289, 456, 718, 727, 849, 878
DraIII CACNNNGTG 1 cut(s) 1727
EciI GGCGGA 2 cut(s) 103, 776
Eco130I CCWWGG 2 cut(s) 21, 274
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 485, 1670
EcoRII CCWGG 1 cut(s) 444
EcoT14I CCWWGG 2 cut(s) 21, 274
EcoT22I ATGCAT 1 cut(s) 867
ErhI CCWWGG 2 cut(s) 21, 274
Esp3I CGTCTC 2 cut(s) 242, 845
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FauNDI CATATG 2 cut(s) 229, 391
FokI GGATG 1 cut(s) 770
FspBI CTAG 3 cut(s) 647, 1179, 1203
HaeIII GGCC 2 cut(s) 558, 1648
HapII CCGG 3 cut(s) 79, 555, 1668
HgaI GACGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HpaII CCGG 3 cut(s) 79, 555, 1668
Hpy166II GTNNAC 3 cut(s) 281, 485, 871
Hpy188I TCNGA 3 cut(s) 221, 627, 854
Hpy8I GTNNAC 3 cut(s) 281, 485, 871
Hpy99I CGWCG 5 cut(s) 92, 107, 133, 155, 170
HpyAV CCTTC 2 cut(s) 49, 569
HpyCH4III ACNGT 2 cut(s) 542, 1679
HpyCH4IV ACGT 2 cut(s) 128, 168
HpyF3I CTNAG 4 cut(s) 98, 218, 317, 521
HpySE526I ACGT 2 cut(s) 128, 168
Kzo9I GATC 7 cut(s) 69, 289, 456, 718, 727, 849, 878
LweI GCATC 1 cut(s) 512
MaeI CTAG 3 cut(s) 647, 1179, 1203
MaeII ACGT 2 cut(s) 128, 168
MaeIII GTNAC 1 cut(s) 684
MalI GATC 7 cut(s) 71, 291, 458, 720, 729, 851, 880
MboI GATC 7 cut(s) 69, 289, 456, 718, 727, 849, 878
MboII GAAGA 3 cut(s) 34, 461, 677
MflI RGATCY 3 cut(s) 69, 718, 849
MhlI GDGCHC 4 cut(s) 17, 641, 756, 873
MluCI AATT 5 cut(s) 546, 581, 621, 679, 903
MmeI TCCRAC 2 cut(s) 457, 877
Mph1103I ATGCAT 1 cut(s) 867
MseI TTAA 2 cut(s) 741, 906
MslI CAYNNNNRTG 3 cut(s) 261, 693, 866
MspI CCGG 3 cut(s) 79, 555, 1668
MspR9I CCNGG 2 cut(s) 80, 446
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 1 cut(s) 192
NciI CCSGG 1 cut(s) 80
NdeI CATATG 2 cut(s) 229, 391
NdeII GATC 7 cut(s) 69, 289, 456, 718, 727, 849, 878
NlaIV GGNNCC 2 cut(s) 358, 720
NmeAIII GCCGAG 1 cut(s) 1647
NsiI ATGCAT 1 cut(s) 867
NspI RCATGY 8 cut(s) 13, 865, 869, 1285, 1509, 1581, 1605, 1692
PaeI GCATGC 1 cut(s) 1285
PciI ACATGT 2 cut(s) 1505, 1688
PflMI CCANNNNNTGG 1 cut(s) 814
PscI ACATGT 2 cut(s) 1505, 1688
PshAI GACNNNNGTC 1 cut(s) 276
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 358, 720
PspPI GGNCC 3 cut(s) 485, 1647, 1670
PsuI RGATCY 3 cut(s) 69, 718, 849
RsaI GTAC 1 cut(s) 661
RsaNI GTAC 1 cut(s) 660
RseI CAYNNNNRTG 3 cut(s) 261, 693, 866
SaqAI TTAA 2 cut(s) 741, 906
Sau3AI GATC 7 cut(s) 69, 289, 456, 718, 727, 849, 878
Sau96I GGNCC 3 cut(s) 485, 1647, 1670
ScrFI CCNGG 2 cut(s) 80, 446
SduI GDGCHC 4 cut(s) 17, 641, 756, 873
SfaNI GCATC 1 cut(s) 512
SfcI CTRYAG 1 cut(s) 898
SinI GGWCC 2 cut(s) 485, 1670
SmiMI CAYNNNNRTG 3 cut(s) 261, 693, 866
SmlI CTYRAG 2 cut(s) 305, 422
SmoI CTYRAG 2 cut(s) 305, 422
SphI GCATGC 1 cut(s) 1285
Sse9I AATT 5 cut(s) 546, 581, 621, 679, 903
SsiI CCGC 5 cut(s) 114, 192, 787, 1645, 1702
SspMI CTAG 3 cut(s) 647, 1179, 1203
StyD4I CCNGG 2 cut(s) 78, 444
StyI CCWWGG 2 cut(s) 21, 274
TaaI ACNGT 2 cut(s) 542, 1679
TaiI ACGT 2 cut(s) 131, 171
TaqI TCGA 2 cut(s) 165, 938
TaqII GACCGA 1 cut(s) 443
TasI AATT 5 cut(s) 546, 581, 621, 679, 903
TauI GCSGC 2 cut(s) 195, 1648
Tru1I TTAA 2 cut(s) 741, 906
Tru9I TTAA 2 cut(s) 741, 906
TscAI CASTG 3 cut(s) 547, 761, 1703
TspGWI ACGGA 2 cut(s) 711, 827
TspRI CASTG 3 cut(s) 547, 761, 1703
Van91I CCANNNNNTGG 1 cut(s) 814
VneI GTGCAC 1 cut(s) 869
VpaK11BI GGWCC 2 cut(s) 485, 1670
XapI RAATTY 2 cut(s) 581, 621
XceI RCATGY 8 cut(s) 13, 865, 869, 1285, 1509, 1581, 1605, 1692
XspI CTAG 3 cut(s) 647, 1179, 1203
Zsp2I ATGCAT 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.