Rmu_sc0004869.1_g000006

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004869.1
OG0011765
Physical Location & Seq
Reverse (-)
16589 .. 19206
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004869.1_g000006.1.cds

Sequence Viewer

Length: 651 bp
atggggtgcatgtgctctaccttggctgccaagttcgccttcttccctccgtctcctcccacctacaagatccacaaccgggaaaacgacggcaagctcagcgtcgtagcctccgcctccacctccacgtcgtttcctctccctcacaccgacgacaactccctcgacgttttgctcattgacaacaaacgcggcagcaagattgtcgctttttatctcagaaacccatatgctcgtctcactctgctttattctcatggcaatgctgctgaccttggtcaactctatgatctctttgtccagctcaaggtcgctctcagggtcaatctcattggatacgactattctggctatggagcctctactggcaagccaagtgaggaaaacacatatgctgacatagaggcagtatatgagtgccttgagaccgaatatggagttagccaggaagatttgatcttgtatgggcagtcagttggaagtggaccaacactccacttggcatctaaactaccaagactaaggggtgtagttctgcacagtgcaattctctccggccttcgtgttgtctgccatgtaaaattcacattctgctttgacatttataaggtatggtcttatatcttggctagtccggtaatagatgtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLH Hydrolase_4

Protein Analysis

216

Amino Acids

23.76

Weight (kDa)

6.28

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32190 AT1G32190
fragaria_vesca FvH4_5g23110 FvH4_5g23110
malus_domestica MD06G1038600.v1.1 MD16G1270400.v1.1
prunus_persica Prupe.5G027400_v2.0.a1 Prupe.5G027400_v2.0.a1
pyrus_communis pycom06g03240
rosa_chinensis RchiOBHm_Chr7g0211991
rosa_laevigata RLG00000002947
rosa_multiflora Rmu_sc0004869.1_g000006
rosa_roxburghii Rroxscaffold_3G00247220
rosa_rugosa Rorug07G0129900
rosa_samantha Rh7AG262700 Rh7BG256800 Rh7CG279300 Rh7DG269500
rosa_wichuraiana Rw7G022420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AccII CGCG 1 cut(s) 192
AciI CCGC 2 cut(s) 114, 192
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 1 cut(s) 581
AfiI CCNNNNNNNGG 2 cut(s) 79, 307
AjiI CACGTC 1 cut(s) 129
AjnI CCWGG 1 cut(s) 444
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 2 cut(s) 97, 304
AluI AGCT 2 cut(s) 97, 304
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 3 cut(s) 57, 242, 419
AlwI GGATC 1 cut(s) 64
AoxI GGCC 1 cut(s) 556
ApeKI GCWGC 3 cut(s) 26, 195, 266
ApoI RAATTY 1 cut(s) 581
AspS9I GGNCC 1 cut(s) 485
AsuC2I CCSGG 1 cut(s) 80
AvaII GGWCC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 13, 207, 253
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 1 cut(s) 446
BciVI GTATCC 1 cut(s) 329
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 3 cut(s) 57, 242, 419
BfaI CTAG 2 cut(s) 630, 649
BfuI GTATCC 1 cut(s) 329
BisI GCNGC 4 cut(s) 27, 193, 196, 267
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 4 cut(s) 28, 194, 197, 268
Bme1390I CCNGG 2 cut(s) 80, 446
Bme18I GGWCC 1 cut(s) 485
BmgBI CACGTC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 2 cut(s) 80, 446
BmsI GCATC 1 cut(s) 512
BoxI GACNNNNGTC 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 290, 443
BpuMI CCSGG 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 21, 274
BsaWI WCCGGW 1 cut(s) 634
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 477, 507
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 307
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 2 cut(s) 21, 274
BseLI CCNNNNNNNGG 2 cut(s) 79, 307
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 3 cut(s) 112, 232, 331
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 3 cut(s) 13, 207, 253
BsgI GTGCAG 1 cut(s) 521
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 3 cut(s) 79, 555, 635
BslI CCNNNNNNNGG 2 cut(s) 79, 307
BsmAI GTCTC 3 cut(s) 57, 242, 419
BsmBI CGTCTC 2 cut(s) 57, 242
BsnI GGCC 1 cut(s) 558
Bso31I GGTCTC 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 3 cut(s) 69, 289, 456
Bsp1720I GCTNAGC 1 cut(s) 98
BspACI CCGC 2 cut(s) 114, 192
BspANI GGCC 1 cut(s) 558
BspCNI CTCAG 3 cut(s) 111, 231, 330
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 358
BspPI GGATC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 268
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 21, 274
BssMI GATC 3 cut(s) 69, 289, 456
BssT1I CCWWGG 2 cut(s) 21, 274
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 95, 371
BstDEI CTNAG 4 cut(s) 98, 218, 317, 521
BstFNI CGCG 1 cut(s) 192
BstKTI GATC 3 cut(s) 72, 292, 459
BstMAI GTCTC 3 cut(s) 57, 242, 419
BstMBI GATC 3 cut(s) 69, 289, 456
BstMWI GCNNNNNNNGC 2 cut(s) 35, 99
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 13
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 78, 444
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 13, 207, 253
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BsuI GTATCC 1 cut(s) 329
BsuRI GGCC 1 cut(s) 558
BtrI CACGTC 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 547
Cac8I GCNNGC 2 cut(s) 95, 371
Cfr13I GGNCC 1 cut(s) 485
CseI GACGC 1 cut(s) 91
CviAII CATG 3 cut(s) 10, 257, 575
DdeI CTNAG 4 cut(s) 98, 218, 317, 521
DpnI GATC 3 cut(s) 71, 291, 458
DpnII GATC 3 cut(s) 69, 289, 456
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 21, 274
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 444
EcoT14I CCWWGG 2 cut(s) 21, 274
ErhI CCWWGG 2 cut(s) 21, 274
Esp3I CGTCTC 2 cut(s) 57, 242
FaeI CATG 3 cut(s) 13, 260, 578
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 3 cut(s) 9, 256, 574
FauNDI CATATG 2 cut(s) 229, 391
Fnu4HI GCNGC 4 cut(s) 27, 193, 196, 267
Fsp4HI GCNGC 4 cut(s) 27, 193, 196, 267
FspBI CTAG 2 cut(s) 630, 649
GluI GCNGC 4 cut(s) 27, 193, 196, 267
HaeIII GGCC 1 cut(s) 558
HapII CCGG 3 cut(s) 79, 555, 635
HgaI GACGC 1 cut(s) 91
Hin1II CATG 3 cut(s) 13, 260, 578
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HpaII CCGG 3 cut(s) 79, 555, 635
Hpy166II GTNNAC 2 cut(s) 281, 485
Hpy188I TCNGA 1 cut(s) 221
Hpy8I GTNNAC 2 cut(s) 281, 485
Hpy99I CGWCG 5 cut(s) 92, 107, 133, 155, 170
HpyAV CCTTC 2 cut(s) 49, 569
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 2 cut(s) 128, 168
HpyCH4V TGCA 3 cut(s) 9, 538, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 99
HpyF3I CTNAG 4 cut(s) 98, 218, 317, 521
HpySE526I ACGT 2 cut(s) 128, 168
Hsp92II CATG 3 cut(s) 13, 260, 578
Kzo9I GATC 3 cut(s) 69, 289, 456
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 8 cut(s) 92, 304, 314, 333, 351, 431, 458, 568
Lsp1109I GCAGC 3 cut(s) 13, 207, 253
LweI GCATC 1 cut(s) 512
MaeI CTAG 2 cut(s) 630, 649
MaeII ACGT 2 cut(s) 128, 168
MalI GATC 3 cut(s) 71, 291, 458
MboI GATC 3 cut(s) 69, 289, 456
MboII GAAGA 2 cut(s) 34, 461
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 2 cut(s) 546, 581
MmeI TCCRAC 1 cut(s) 457
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 3 cut(s) 79, 555, 635
MspR9I CCNGG 2 cut(s) 80, 446
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 35, 99
NciI CCSGG 1 cut(s) 80
NdeI CATATG 2 cut(s) 229, 391
NdeII GATC 3 cut(s) 69, 289, 456
NlaIII CATG 3 cut(s) 13, 260, 578
NlaIV GGNNCC 1 cut(s) 358
NspI RCATGY 1 cut(s) 13
PkrI GCNGC 4 cut(s) 28, 194, 197, 268
PshAI GACNNNNGTC 1 cut(s) 276
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 1 cut(s) 485
PsuI RGATCY 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 261
SatI GCNGC 4 cut(s) 27, 193, 196, 267
Sau3AI GATC 3 cut(s) 69, 289, 456
Sau96I GGNCC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 80, 446
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 1 cut(s) 512
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 305, 422
SmoI CTYRAG 2 cut(s) 305, 422
Sse9I AATT 2 cut(s) 546, 581
SsiI CCGC 2 cut(s) 114, 192
SspMI CTAG 2 cut(s) 630, 649
StyD4I CCNGG 2 cut(s) 78, 444
StyI CCWWGG 2 cut(s) 21, 274
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 2 cut(s) 131, 171
TaqI TCGA 1 cut(s) 165
TaqII GACCGA 1 cut(s) 443
TasI AATT 2 cut(s) 546, 581
TauI GCSGC 1 cut(s) 195
TscAI CASTG 1 cut(s) 547
TseI GCWGC 3 cut(s) 26, 195, 266
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 1 cut(s) 581
XceI RCATGY 1 cut(s) 13
XspI CTAG 2 cut(s) 630, 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.