Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008726

Physical Location & Seq

Genomic Coordinates Reverse (-)

5206138 .. 5209148

Gene Structure 3011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1040700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCAGACTTACCAGGCTATATGCGTGCCTGCTTGCATACTGGAAAACTTGCCGCCCTGGCAATTTTGGTCTCTGGAGGGATTGTATTGCAAATTTTGGCGTGTGCTTTGTACAATAATTGGTGGCCAATGCTAACTGTAATAATGTATGTGCTCCTTCCCATGCCATTGCTGTTCTTTGTGGGATCCGATTCTTCTATATTTTCACATTCTGAAAATGGCTGGGTAAATGCAACCAAGTTCTTGACCGGAGCTTCAGCTATTGGAAGCATTGCAATCCCTGCTATCTTAAAACACGCTGGTGTAATTGGTTGGGGGGCCCTGGCTATGGAGCTCTCATCCTTTTTCGTATTTGTACTGGCAATAATGTGTTACATTCGGACAAGTGATGATGATGACAGCTACAGTTCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0006810 GO:0007034 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032879 GO:0032880 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045324 GO:0046907 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0071985 GO:0097708 GO:1903827 GO:1903828 GO:2000008 GO:2000009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps55

Protein Analysis

139

Amino Acids

14.85

Weight (kDa)

5.32

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps55	PF04133	18 - 132	2.9e-34	Vacuolar protein sorting 55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32410 AT1G32410 AT1G32410 AT1G32410 AT1G32410
fragaria_vesca	FvH4_5g21150 FvH4_5g21150
malus_domestica	MD06G1040700.v1.1 MD16G1269000.v1.1
prunus_persica	Prupe.5G047000_v2.0.a1 Prupe.5G047000_v2.0.a1
pyrus_communis	pycom06g03390 pycom16g23800
rosa_chinensis	RchiOBHm_Chr7g0208281
rosa_laevigata	RLG00000003233
rosa_multiflora	Rmu_sc0000841.1_g000021 Rmu_sc0007869.1_g000023 Rmu_sc0032312.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250620
rosa_samantha	Rh7AG237000 Rh7CG252900 Rh7DG243000
rosa_wichuraiana	Rw7G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	2 cut(s)	180, 193
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	113, 357
AfiI	CCNNNNNNNGG	1 cut(s)	328
AjnI	CCWGG	3 cut(s)	13, 57, 321
AleI	CACNNNNGTG	1 cut(s)	300
AluBI	AGCT	4 cut(s)	254, 260, 334, 402
AluI	AGCT	4 cut(s)	254, 260, 334, 402
Alw21I	GWGCWC	2 cut(s)	156, 336
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	2 cut(s)	180, 193
AoxI	GGCC	2 cut(s)	125, 318
ApaI	GGGCCC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	318, 319
BaeGI	GKGCMC	1 cut(s)	322
BalI	TGGCCA	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	322, 336
Bbv12I	GWGCWC	2 cut(s)	156, 336
BciT130I	CCWGG	3 cut(s)	15, 59, 323
BcoDI	GTCTC	1 cut(s)	76
BfmI	CTRYAG	1 cut(s)	403
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	3 cut(s)	15, 59, 323
BmgT120I	GGNCC	2 cut(s)	318, 319
BmiI	GGNNCC	3 cut(s)	187, 319, 320
BmrFI	CCNGG	3 cut(s)	15, 59, 323
BpmI	CTGGAG	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	57, 321
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	2 cut(s)	46, 363
Bse3DI	GCAATG	2 cut(s)	167, 270
BseBI	CCWGG	3 cut(s)	15, 59, 323
BseDI	CCNNGG	2 cut(s)	57, 321
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	2 cut(s)	167, 270
BseNI	ACTGG	2 cut(s)	46, 363
BseSI	GKGCMC	1 cut(s)	322
BseYI	CCCAGC	1 cut(s)	222
BshFI	GGCC	2 cut(s)	127, 320
BsiHKAI	GWGCWC	2 cut(s)	156, 336
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	127, 320
Bso31I	GGTCTC	1 cut(s)	76
Bsp120I	GGGCCC	1 cut(s)	318
Bsp1286I	GDGCHC	3 cut(s)	156, 322, 336
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	185, 411
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	2 cut(s)	127, 320
BspLI	GGNNCC	3 cut(s)	187, 319, 320
BspPI	GGATC	2 cut(s)	180, 193
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	2 cut(s)	167, 270
BsrGI	TGTACA	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	46, 363
BssECI	CCNNGG	2 cut(s)	57, 321
BssMI	GATC	2 cut(s)	185, 411
Bst2UI	CCWGG	3 cut(s)	15, 59, 323
Bst4CI	ACNGT	2 cut(s)	139, 407
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	27, 31, 35
BstF5I	GGATG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	188, 414
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	185, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 281
BstNI	CCWGG	3 cut(s)	15, 59, 323
BstSCI	CCNGG	3 cut(s)	13, 57, 321
BstSFI	CTRYAG	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	127, 320
BtsCI	GGATG	1 cut(s)	338
Cac8I	GCNNGC	3 cut(s)	27, 31, 35
Cfr13I	GGNCC	2 cut(s)	318, 319
Csp6I	GTAC	2 cut(s)	112, 356
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	9 cut(s)	18, 127, 222, 254, 260, 320, 326, 334, 402
CviKI_1	RGCY	9 cut(s)	18, 127, 222, 254, 260, 320, 326, 334, 402
CviQI	GTAC	2 cut(s)	112, 356
DpnI	GATC	2 cut(s)	187, 413
DpnII	GATC	2 cut(s)	185, 411
EaeI	YGGCCR	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	334
Eco24I	GRGCYC	2 cut(s)	322, 336
Eco31I	GGTCTC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	334
EcoO109I	RGGNCCY	2 cut(s)	318, 319
EcoRII	CCWGG	3 cut(s)	13, 57, 321
EcoT38I	GRGCYC	2 cut(s)	322, 336
FaeI	CATG	1 cut(s)	166
FaiI	YATR	7 cut(s)	21, 23, 39, 150, 164, 200, 329
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	2 cut(s)	322, 336
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	1 cut(s)	226
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	127, 320
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	1 cut(s)	166
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	249
Hpy188I	TCNGA	4 cut(s)	190, 214, 381, 416
Hpy188III	TCNNGA	2 cut(s)	75, 244
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	139, 407
HpyCH4V	TGCA	4 cut(s)	37, 91, 233, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 281
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	185, 411
LmnI	GCTCC	3 cut(s)	159, 251, 331
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	2 cut(s)	187, 413
MboI	GATC	2 cut(s)	185, 411
MboII	GAAGA	1 cut(s)	186
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	3 cut(s)	156, 322, 336
MlsI	TGGCCA	1 cut(s)	127
MluCI	AATT	4 cut(s)	63, 93, 118, 306
MluNI	TGGCCA	1 cut(s)	127
MnlI	CCTC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	127
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	3 cut(s)	15, 59, 323
MvaI	CCWGG	3 cut(s)	15, 59, 323
MwoI	GCNNNNNNNGC	2 cut(s)	59, 281
NdeII	GATC	2 cut(s)	185, 411
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	3 cut(s)	187, 319, 320
OliI	CACNNNNGTG	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	3 cut(s)	13, 57, 321
PspFI	CCCAGC	1 cut(s)	222
PspGI	CCWGG	3 cut(s)	13, 57, 321
PspN4I	GGNNCC	3 cut(s)	187, 319, 320
PspOMI	GGGCCC	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	318, 319
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	2 cut(s)	113, 357
RsaNI	GTAC	2 cut(s)	112, 356
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	185, 411
Sau96I	GGNCC	2 cut(s)	318, 319
ScrFI	CCNGG	3 cut(s)	15, 59, 323
SduI	GDGCHC	3 cut(s)	156, 322, 336
SetI	ASST	4 cut(s)	256, 262, 336, 404
SfcI	CTRYAG	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	4 cut(s)	63, 93, 118, 306
SsiI	CCGC	1 cut(s)	54
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	13, 57, 321
TaaI	ACNGT	2 cut(s)	139, 407
TaqI	TCGA	1 cut(s)	410
TasI	AATT	4 cut(s)	63, 93, 118, 306
TatI	WGTACW	2 cut(s)	111, 355
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
XapI	RAATTY	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.