Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008726

Physical Location & Seq

Genomic Coordinates Reverse (-)

5014028 .. 5017089

Gene Structure 3062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCAGATTTACCAGGCTATATGCGTGCCTGCTTGCATACTGGGAAACTTGCTGCCTTGGCAATTTTGGTCTCTGGAGGGATTGTATTGCAAATTTTGGCATGTGCTTTGTACAATAATTGGTGGCCGATGCTTACTATAATAATGTATGTGCTTCTTCCCATGCCATTGCTGTTCTTTGTGGGATCTGATTCTTCTGTACTTTCAGAATCTGATAATGGATGGGTTAATGCAACCAAGTTCCTGACTGGAGCTTCAGCTATTGGCAGCATTGCAATACCTGCTATCTTAAAGCATGCTGGTGTTATTGGTTGGGGAGCCATGGCAATGGAGCTCGCGTCCTTTTTCGTATTTGTACTGGCAATCATGTGTTACATTCGAACGAGTGATGAAGACAGCTACAGTGCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0006810 GO:0007034 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032879 GO:0032880 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045324 GO:0046907 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0071985 GO:0097708 GO:1903827 GO:1903828 GO:2000008 GO:2000009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps55

Protein Analysis

138

Amino Acids

14.68

Weight (kDa)

5.0

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32410 AT1G32410 AT1G32410 AT1G32410 AT1G32410
fragaria_vesca	FvH4_5g21150 FvH4_5g21150
malus_domestica	MD06G1040700.v1.1 MD16G1269000.v1.1
prunus_persica	Prupe.5G047000_v2.0.a1 Prupe.5G047000_v2.0.a1
pyrus_communis	pycom06g03390 pycom16g23800
rosa_chinensis	RchiOBHm_Chr7g0208281
rosa_laevigata	RLG00000003233
rosa_multiflora	Rmu_sc0000841.1_g000021 Rmu_sc0007869.1_g000023 Rmu_sc0032312.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250620
rosa_samantha	Rh7AG237000 Rh7CG252900 Rh7DG243000
rosa_wichuraiana	Rw7G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccII	CGCG	1 cut(s)	338
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	113, 201, 357
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	4 cut(s)	254, 260, 334, 399
AluI	AGCT	4 cut(s)	254, 260, 334, 399
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	53, 267
ApoI	RAATTY	1 cut(s)	93
AsuII	TTCGAA	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	40, 279
BccI	CCATC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	76
BfmI	CTRYAG	1 cut(s)	400
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	54, 268
BlsI	GCNGC	2 cut(s)	55, 269
Bme1390I	CCNGG	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	399
BpmI	CTGGAG	2 cut(s)	96, 270
Bpu14I	TTCGAA	1 cut(s)	379
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	57, 321
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 323, 353
Bse1I	ACTGG	3 cut(s)	46, 253, 363
Bse3DI	GCAATG	3 cut(s)	167, 270, 333
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	57, 321
BseGI	GGATG	1 cut(s)	227
BseMI	GCAATG	3 cut(s)	167, 270, 333
BseNI	ACTGG	3 cut(s)	46, 253, 363
BseXI	GCAGC	2 cut(s)	40, 279
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	127
Bso31I	GGTCTC	1 cut(s)	76
Bsp119I	TTCGAA	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	185
Bsp19I	CCATGG	1 cut(s)	321
BspANI	GGCC	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	193
BspT104I	TTCGAA	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	3 cut(s)	167, 270, 333
BsrGI	TGTACA	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	46, 253, 363
BssECI	CCNNGG	2 cut(s)	57, 321
BssMI	GATC	1 cut(s)	185
BssT1I	CCWWGG	2 cut(s)	57, 321
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	404
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	5 cut(s)	27, 31, 35, 297, 336
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	227
BstFNI	CGCG	1 cut(s)	338
BstKTI	GATC	1 cut(s)	188
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 281
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	2 cut(s)	105, 299
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	400
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	40, 279
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	5 cut(s)	27, 31, 35, 297, 336
CaiI	CAGNNNCTG	1 cut(s)	212
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	112, 200, 356
CviAII	CATG	5 cut(s)	102, 163, 296, 322, 367
CviJI	RGCY	7 cut(s)	18, 127, 254, 260, 320, 334, 399
CviKI_1	RGCY	7 cut(s)	18, 127, 254, 260, 320, 334, 399
CviQI	GTAC	3 cut(s)	112, 200, 356
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	2 cut(s)	57, 321
Eco24I	GRGCYC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	57, 321
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	2 cut(s)	57, 321
FaeI	CATG	5 cut(s)	105, 166, 299, 325, 370
FatI	CATG	5 cut(s)	101, 162, 295, 321, 366
Fnu4HI	GCNGC	2 cut(s)	54, 268
FokI	GGATG	1 cut(s)	234
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	54, 268
GluI	GCNGC	2 cut(s)	54, 268
GsuI	CTGGAG	2 cut(s)	96, 270
HaeIII	GGCC	1 cut(s)	127
HgaI	GACGC	1 cut(s)	327
Hin1II	CATG	5 cut(s)	105, 166, 299, 325, 370
HinfI	GANTC	2 cut(s)	191, 209
Hpy188I	TCNGA	4 cut(s)	190, 208, 214, 413
Hpy188III	TCNNGA	2 cut(s)	75, 244
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4V	TGCA	5 cut(s)	37, 91, 233, 275, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 281
Hsp92II	CATG	5 cut(s)	105, 166, 299, 325, 370
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	251, 317, 331
LpnPI	CCDG	9 cut(s)	27, 27, 43, 60, 234, 257, 285, 294, 344
Lsp1109I	GCAGC	2 cut(s)	40, 279
LweI	GCATC	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	3 cut(s)	149, 186, 404
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	3 cut(s)	63, 93, 118
MnlI	CCTC	1 cut(s)	71
MseI	TTAA	2 cut(s)	228, 290
MslI	CAYNNNNRTG	2 cut(s)	300, 326
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	59, 281
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	5 cut(s)	105, 166, 299, 325, 370
NlaIV	GGNNCC	1 cut(s)	319
NspI	RCATGY	2 cut(s)	105, 299
NspV	TTCGAA	1 cut(s)	379
PaeI	GCATGC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	191, 209
PkrI	GCNGC	2 cut(s)	55, 269
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	3 cut(s)	113, 201, 357
RsaNI	GTAC	3 cut(s)	112, 200, 356
RseI	CAYNNNNRTG	2 cut(s)	300, 326
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	228, 290
SatI	GCNGC	2 cut(s)	54, 268
Sau3AI	GATC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	5 cut(s)	256, 262, 283, 336, 401
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	400
SfuI	TTCGAA	1 cut(s)	379
SmiMI	CAYNNNNRTG	2 cut(s)	300, 326
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	3 cut(s)	63, 93, 118
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	2 cut(s)	57, 321
TaaI	ACNGT	1 cut(s)	404
TaqI	TCGA	1 cut(s)	379
TasI	AATT	3 cut(s)	63, 93, 118
TatI	WGTACW	3 cut(s)	111, 199, 355
TfiI	GAWTC	2 cut(s)	191, 209
Tru1I	TTAA	2 cut(s)	228, 290
Tru9I	TTAA	2 cut(s)	228, 290
TscAI	CASTG	1 cut(s)	409
TseI	GCWGC	2 cut(s)	53, 267
TspDTI	ATGAA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	409
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	2 cut(s)	105, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.