Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032312.1

Orthogroup ID

OG0008726

Physical Location & Seq

Genomic Coordinates Reverse (-)

395 .. 772

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032312.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgtatgtgcttcttccgatgccgttgctgttctttgtgggaactgatttatctgttttccaggaatctgataatagctgggttaatgtaaccaagttcatgactggagcttcagccattggaagcattgcaataccagccatcttaaaacacgctggtgttattggttggggagccctggccttggagctctcatcctttttcgtatttgtacttgcaataatgtgttacatacggtcagatgaagacgacagctacagttcaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0006810 GO:0007034 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032879 GO:0032880 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045324 GO:0046907 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0071985 GO:0097708 GO:1903827 GO:1903828 GO:2000008 GO:2000009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps55

Protein Analysis

89

Amino Acids

9.7

Weight (kDa)

4.23

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32410 AT1G32410 AT1G32410 AT1G32410 AT1G32410
fragaria_vesca	FvH4_5g21150 FvH4_5g21150
malus_domestica	MD06G1040700.v1.1 MD16G1269000.v1.1
prunus_persica	Prupe.5G047000_v2.0.a1 Prupe.5G047000_v2.0.a1
pyrus_communis	pycom06g03390 pycom16g23800
rosa_chinensis	RchiOBHm_Chr7g0208281
rosa_laevigata	RLG00000003233
rosa_multiflora	Rmu_sc0000841.1_g000021 Rmu_sc0007869.1_g000023 Rmu_sc0032312.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250620
rosa_samantha	Rh7AG237000 Rh7CG252900 Rh7DG243000
rosa_wichuraiana	Rw7G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	264
AjnI	CCWGG	2 cut(s)	60, 177
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	4 cut(s)	78, 110, 190, 255
AluI	AGCT	4 cut(s)	78, 110, 190, 255
Alw21I	GWGCWC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	178, 192
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	7
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	2 cut(s)	62, 179
BfmI	CTRYAG	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	62, 179
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	62, 179
BmsI	GCATC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	177, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	62, 179
BseDI	CCNNGG	2 cut(s)	177, 183
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	78
BshFI	GGCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	184
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	178, 192
BspANI	GGCC	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	177, 183
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	62, 179
Bst4CI	ACNGT	2 cut(s)	237, 260
BstF5I	GGATG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	2 cut(s)	62, 179
BstSCI	CCNGG	2 cut(s)	60, 177
BstSFI	CTRYAG	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	194
CciI	TCATGA	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	8 cut(s)	78, 110, 116, 140, 176, 182, 190, 255
CviKI_1	RGCY	8 cut(s)	78, 110, 116, 140, 176, 182, 190, 255
CviQI	GTAC	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	2 cut(s)	178, 192
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	60, 177
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	2 cut(s)	178, 192
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	103
FaiI	YATR	3 cut(s)	6, 101, 233
FatI	CATG	1 cut(s)	99
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	2 cut(s)	178, 192
GsaI	CCCAGC	1 cut(s)	82
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	1 cut(s)	65
Hpy188I	TCNGA	4 cut(s)	18, 70, 241, 269
Hpy188III	TCNNGA	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	237, 260
HpyCH4V	TGCA	2 cut(s)	131, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	103
LmnI	GCTCC	3 cut(s)	107, 173, 187
LpnPI	CCDG	8 cut(s)	47, 64, 74, 90, 141, 150, 164, 191
LweI	GCATC	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	88, 227
MboII	GAAGA	2 cut(s)	5, 257
MhlI	GDGCHC	2 cut(s)	178, 192
MseI	TTAA	2 cut(s)	84, 146
MslI	CAYNNNNRTG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	62, 179
MvaI	CCWGG	2 cut(s)	62, 179
MwoI	GCNNNNNNNGC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	175
OliI	CACNNNNGTG	1 cut(s)	156
PagI	TCATGA	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	60, 177
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	2 cut(s)	60, 177
PspN4I	GGNNCC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	84, 146
ScrFI	CCNGG	2 cut(s)	62, 179
SduI	GDGCHC	2 cut(s)	178, 192
SetI	ASST	4 cut(s)	80, 112, 192, 257
SfaNI	GCATC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	60, 177
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	237, 260
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	84, 146
Tru9I	TTAA	2 cut(s)	84, 146
TspDTI	ATGAA	2 cut(s)	88, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.