Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008726

Physical Location & Seq

Genomic Coordinates Forward (+)

34746180 .. 34749743

Gene Structure 3564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1269000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCAGACTTAACAGTCTATATGCGTGCTTGCTTGCACACTGGAAAACTTGCTGCCTTGGCAATTTTGGTGTCTGGAGGAATTGTATTGCAAATTTTGGCATGTGCCTTGTACAATAATTGGTGGCCAATGCTAACTGTAATAATGTATGTGCTCCTTCCCATGCCATTGCTGTTCTTTGTGGGATCCGATTCTTCTATATTTTCAGAATCTGAAAATGGCTGGGTAAATGCAACCAAGTTCCTGACTGGAGCTTCAGCTATTGGAAGCATTGCAATCCCTGCAATCTTAAAACACGCTGGTGTTATTGGTTGGGGAGCCTTGGCAATGGAGCTCTCATCCTTTTTCGTATTTATACTGGCAATAATGTGTTACATTCGGACGATTGATGGTGATGACAGCTACAGTATCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0006810 GO:0007034 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032879 GO:0032880 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045324 GO:0046907 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0071985 GO:0097708 GO:1903827 GO:1903828 GO:2000008 GO:2000009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps55

Protein Analysis

139

Amino Acids

14.9

Weight (kDa)

5.0

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps55	PF04133	18 - 130	7.3e-34	Vacuolar protein sorting 55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32410 AT1G32410 AT1G32410 AT1G32410 AT1G32410
fragaria_vesca	FvH4_5g21150 FvH4_5g21150
malus_domestica	MD06G1040700.v1.1 MD16G1269000.v1.1
prunus_persica	Prupe.5G047000_v2.0.a1 Prupe.5G047000_v2.0.a1
pyrus_communis	pycom06g03390 pycom16g23800
rosa_chinensis	RchiOBHm_Chr7g0208281
rosa_laevigata	RLG00000003233
rosa_multiflora	Rmu_sc0000841.1_g000021 Rmu_sc0007869.1_g000023 Rmu_sc0032312.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250620
rosa_samantha	Rh7AG237000 Rh7CG252900 Rh7DG243000
rosa_wichuraiana	Rw7G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	180, 193
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	113
AleI	CACNNNNGTG	1 cut(s)	300
AluBI	AGCT	4 cut(s)	254, 260, 334, 402
AluI	AGCT	4 cut(s)	254, 260, 334, 402
Alw21I	GWGCWC	2 cut(s)	156, 336
AlwI	GGATC	2 cut(s)	180, 193
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	336
Bbv12I	GWGCWC	2 cut(s)	156, 336
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	403
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	187, 319
BpmI	CTGGAG	2 cut(s)	96, 270
BsaJI	CCNNGG	2 cut(s)	57, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse1I	ACTGG	3 cut(s)	46, 253, 363
Bse3DI	GCAATG	3 cut(s)	167, 270, 333
BseDI	CCNNGG	2 cut(s)	57, 321
BseGI	GGATG	1 cut(s)	338
BseMI	GCAATG	3 cut(s)	167, 270, 333
BseNI	ACTGG	3 cut(s)	46, 253, 363
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	222
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	156, 336
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	156, 336
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	187, 319
BspPI	GGATC	2 cut(s)	180, 193
BsrDI	GCAATG	3 cut(s)	167, 270, 333
BsrGI	TGTACA	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	46, 253, 363
BssECI	CCNNGG	2 cut(s)	57, 321
BssMI	GATC	1 cut(s)	185
BssT1I	CCWWGG	2 cut(s)	57, 321
Bst4CI	ACNGT	3 cut(s)	16, 139, 407
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	27, 31, 35
BstF5I	GGATG	1 cut(s)	338
BstKTI	GATC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 281
BstNSI	RCATGY	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	27, 31, 35
CaiI	CAGNNNCTG	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	2 cut(s)	102, 163
CviJI	RGCY	7 cut(s)	127, 222, 254, 260, 320, 334, 402
CviKI_1	RGCY	7 cut(s)	127, 222, 254, 260, 320, 334, 402
CviQI	GTAC	1 cut(s)	112
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	2 cut(s)	57, 321
Eco24I	GRGCYC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	57, 321
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	2 cut(s)	57, 321
FaeI	CATG	2 cut(s)	105, 166
FaiI	YATR	7 cut(s)	21, 23, 103, 150, 164, 200, 356
FatI	CATG	2 cut(s)	101, 162
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	1 cut(s)	226
GsuI	CTGGAG	2 cut(s)	96, 270
HaeIII	GGCC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	105, 166
HinfI	GANTC	2 cut(s)	191, 209
HphI	GGTGA	1 cut(s)	404
Hpy188I	TCNGA	5 cut(s)	190, 208, 214, 381, 416
Hpy188III	TCNNGA	2 cut(s)	75, 244
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	3 cut(s)	16, 139, 407
HpyCH4V	TGCA	5 cut(s)	37, 91, 233, 275, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 281
Hsp92II	CATG	2 cut(s)	105, 166
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	4 cut(s)	159, 251, 317, 331
LpnPI	CCDG	8 cut(s)	27, 60, 208, 234, 257, 285, 294, 344
Lsp1109I	GCAGC	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	1 cut(s)	186
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	2 cut(s)	156, 336
MlsI	TGGCCA	1 cut(s)	127
MluCI	AATT	4 cut(s)	63, 81, 93, 118
MluNI	TGGCCA	1 cut(s)	127
MnlI	CCTC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	2 cut(s)	11, 290
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	59, 281
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	105, 166
NlaIV	GGNNCC	2 cut(s)	187, 319
NspI	RCATGY	1 cut(s)	105
OliI	CACNNNNGTG	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	191, 209
PkrI	GCNGC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	187, 319
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	11, 290
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	185
SduI	GDGCHC	2 cut(s)	156, 336
SetI	ASST	4 cut(s)	256, 262, 336, 404
SfcI	CTRYAG	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	4 cut(s)	63, 81, 93, 118
SstI	GAGCTC	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	57, 321
TaaI	ACNGT	3 cut(s)	16, 139, 407
TasI	AATT	4 cut(s)	63, 81, 93, 118
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	191, 209
Tru1I	TTAA	2 cut(s)	11, 290
Tru9I	TTAA	2 cut(s)	11, 290
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	1 cut(s)	53
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.