Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000841.1

Orthogroup ID

OG0008726

Physical Location & Seq

Genomic Coordinates Reverse (-)

76021 .. 76817

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000841.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggctgacttaccacgctatttgcgtctttgctttcaatctgggaaacttgctttcttggcaattttggtatctggagggattgtattgcaaattttggcatgtgctttgtataataattggtggccgatgctaactgtaataatgtatgtgcttcttccgatgccgttactgttctttgtgggaactgatttatctgttttccaggaatctgataatagctgggttaatgtaaccaagttcatgactggagcttcagccattggaagcattgcaataccagccatcttaaaacacgctggtgttattggttggggagccctggccttggagctctcatcctttttcgtatttgtacttgcaataatgtgttacatacggtcagatgaagacgacagctacagttcaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0006810 GO:0007034 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032879 GO:0032880 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045324 GO:0046907 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0071985 GO:0097708 GO:1903827 GO:1903828 GO:2000008 GO:2000009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps55

Protein Analysis

137

Amino Acids

15.08

Weight (kDa)

4.75

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32410 AT1G32410 AT1G32410 AT1G32410 AT1G32410
fragaria_vesca	FvH4_5g21150 FvH4_5g21150
malus_domestica	MD06G1040700.v1.1 MD16G1269000.v1.1
prunus_persica	Prupe.5G047000_v2.0.a1 Prupe.5G047000_v2.0.a1
pyrus_communis	pycom06g03390 pycom16g23800
rosa_chinensis	RchiOBHm_Chr7g0208281
rosa_laevigata	RLG00000003233
rosa_multiflora	Rmu_sc0000841.1_g000021 Rmu_sc0007869.1_g000023 Rmu_sc0032312.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250620
rosa_samantha	Rh7AG237000 Rh7CG252900 Rh7DG243000
rosa_wichuraiana	Rw7G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	38, 408
AjnI	CCWGG	2 cut(s)	204, 321
AleI	CACNNNNGTG	1 cut(s)	300
AluBI	AGCT	4 cut(s)	222, 254, 334, 399
AluI	AGCT	4 cut(s)	222, 254, 334, 399
Alw21I	GWGCWC	1 cut(s)	336
AoxI	GGCC	2 cut(s)	125, 324
ApoI	RAATTY	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	322, 336
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	336
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	206, 323
BfmI	CTRYAG	1 cut(s)	400
Bme1390I	CCNGG	2 cut(s)	206, 323
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	206, 323
BmsI	GCATC	2 cut(s)	120, 153
BpiI	GAAGAC	1 cut(s)	396
BpmI	CTGGAG	2 cut(s)	96, 270
BsaJI	CCNNGG	2 cut(s)	321, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	206, 323
BseDI	CCNNGG	2 cut(s)	321, 327
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	222
BshFI	GGCC	2 cut(s)	127, 326
BsiHKAI	GWGCWC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	328
BsnI	GGCC	2 cut(s)	127, 326
Bsp1286I	GDGCHC	2 cut(s)	322, 336
BspANI	GGCC	2 cut(s)	127, 326
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	321, 327
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	206, 323
Bst4CI	ACNGT	4 cut(s)	139, 174, 381, 404
BstF5I	GGATG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 281
BstNI	CCWGG	2 cut(s)	206, 323
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	204, 321
BstSFI	CTRYAG	1 cut(s)	400
BstV2I	GAAGAC	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	127, 326
BtsCI	GGATG	1 cut(s)	338
CciI	TCATGA	1 cut(s)	243
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	356
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	2 cut(s)	102, 244
CviQI	GTAC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	2 cut(s)	322, 336
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	204, 321
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	2 cut(s)	322, 336
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	2 cut(s)	105, 247
FaiI	YATR	5 cut(s)	103, 114, 150, 245, 377
FatI	CATG	2 cut(s)	101, 243
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	2 cut(s)	322, 336
GsaI	CCCAGC	1 cut(s)	226
GsuI	CTGGAG	2 cut(s)	96, 270
HaeIII	GGCC	2 cut(s)	127, 326
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	105, 247
HinfI	GANTC	1 cut(s)	209
Hpy188I	TCNGA	4 cut(s)	162, 214, 385, 413
Hpy188III	TCNNGA	2 cut(s)	75, 244
HpyCH4III	ACNGT	4 cut(s)	139, 174, 381, 404
HpyCH4V	TGCA	3 cut(s)	91, 275, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 281
Hsp92II	CATG	2 cut(s)	105, 247
LmnI	GCTCC	3 cut(s)	251, 317, 331
LweI	GCATC	2 cut(s)	120, 153
MaeIII	GTNAC	3 cut(s)	168, 232, 371
MboII	GAAGA	2 cut(s)	149, 401
MhlI	GDGCHC	2 cut(s)	322, 336
MluCI	AATT	3 cut(s)	63, 93, 118
MnlI	CCTC	1 cut(s)	71
MseI	TTAA	2 cut(s)	228, 290
MslI	CAYNNNNRTG	1 cut(s)	300
MspR9I	CCNGG	2 cut(s)	206, 323
MvaI	CCWGG	2 cut(s)	206, 323
MwoI	GCNNNNNNNGC	2 cut(s)	59, 281
NlaIII	CATG	2 cut(s)	105, 247
NlaIV	GGNNCC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	105
OliI	CACNNNNGTG	1 cut(s)	300
PagI	TCATGA	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	204, 321
PspFI	CCCAGC	1 cut(s)	222
PspGI	CCWGG	2 cut(s)	204, 321
PspN4I	GGNNCC	1 cut(s)	319
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	228, 290
ScrFI	CCNGG	2 cut(s)	206, 323
SduI	GDGCHC	2 cut(s)	322, 336
SetI	ASST	4 cut(s)	224, 256, 336, 401
SfaNI	GCATC	2 cut(s)	120, 153
SfcI	CTRYAG	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	3 cut(s)	63, 93, 118
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	204, 321
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	4 cut(s)	139, 174, 381, 404
TasI	AATT	3 cut(s)	63, 93, 118
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	228, 290
Tru9I	TTAA	2 cut(s)	228, 290
TspDTI	ATGAA	2 cut(s)	232, 402
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.