Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011031

Physical Location & Seq

Genomic Coordinates Forward (+)

21994255 .. 21995556

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1091200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAGGACTCCCAAATACCATATTTCTGTGCTCCTTTAAGCTTTCAAGAAGACAACGAACTGTTTGCTGCTAAATTTCCTCAGGCCTTTGAAGCCACAACAACTTTAGATGAATTGGAGGAGCTTTACAAGCCTTTTTACCCAGTTTTTCAACTTACAACCCCACCAACTATTCTTACCTCTTCCATATCTGTCCCCCAAGAAATCATCACACTAGCACCCAAGCTGATAAAAAACATGGAGGAATCAACACCTGTTCGTAAAAGAATAAGGAAGAATCAGAACAAAAGGGTTGTGAAAGAGGTTAAAGCAGAAGATCTCTTTTCGGATGTGTGGGCGTGGCGTAAGTATGGGCAAAAACCCATCAAAGGATCGCCATATCCGAGGAGCTATTACAGATGCAGCAGCTCAAAAGGATGTTCAGCGAGAAAACAAGTAGAAAGGAGCTGTTCGAATCCTGAAACGTTCATCATAACCTACACTGCAGAACACAACCATGTTTATCCAACTCGTCGAAACTCTCTTGCTGGCAGCACCAGAAGCAAGTTCTCTTCATCTAAAAACAAGGACAAGTGTGGTAGTTCTTTGAATTCTCCAGCTACGCCTAATATTGCCGCATCCATTGAAGATGATCGTGAGTTTGTGGAAAGCGTGAATATTAATGCTGTAAAAGTGGAAGCAAAATTGTCGGAACAGGATGAAATTAGTAAGGAAAATTTTTTTTTGGATACTACGGTGAATGATGAAATTTTCCCAAGCTTAGAGGATTTGGATAGAAAGTTGGAACCAGTCATGGATGGTTGGTTTTCGGATGAATTTTCAGACAATTTTCCAAGTCCTTGGTTCAATATTAAGGGTCACTCTAATACTGTAACCGGTGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

296

Amino Acids

33.55

Weight (kDa)

5.49

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	110 - 166	1.3e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23550
fragaria_vesca	FvH4_5g03210 FvH4_5g03210
malus_domestica	MD06G1091200.v1.1 MD14G1112200.v1.1
prunus_persica	Prupe.5G106700_v2.0.a1 Prupe.5G106700_v2.0.a1
pyrus_communis	pycom06g08670 pycom14g10690
rosa_chinensis	RchiOBHm_Chr7g0196571
rosa_laevigata	RLG00000004005
rosa_multiflora	Rmu_sc0006080.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259200
rosa_rugosa	Rorug07G0034700 Rorug07G0034800
rosa_samantha	Rh7AG158800 Rh7BG160800 Rh7CG167200 Rh7DG160000
rosa_wichuraiana	Rw7G013880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	615
AclI	AACGTT	1 cut(s)	464
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	5 cut(s)	74, 589, 715, 747, 815
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgeI	ACCGGT	1 cut(s)	875
AgsI	TTSAA	6 cut(s)	47, 92, 152, 589, 626, 847
AluBI	AGCT	8 cut(s)	42, 124, 226, 390, 408, 447, 599, 759
AluI	AGCT	8 cut(s)	42, 124, 226, 390, 408, 447, 599, 759
Alw21I	GWGCWC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	4 cut(s)	68, 402, 405, 531
ApoI	RAATTY	5 cut(s)	74, 589, 715, 747, 815
AseI	ATTAAT	1 cut(s)	660
AsiGI	ACCGGT	1 cut(s)	875
AsuHPI	GGTGA	1 cut(s)	748
AsuII	TTCGAA	1 cut(s)	452
AxyI	CCTNAGG	1 cut(s)	81
BaeI	ACNNNNGTAYC	2 cut(s)	720, 753
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	4 cut(s)	55, 414, 417, 543
BccI	CCATC	2 cut(s)	371, 791
BcgI	CGANNNNNNTGC	4 cut(s)	47, 81, 669, 703
BciVI	GTATCC	1 cut(s)	721
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	721
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	5 cut(s)	69, 403, 406, 532, 615
BlsI	GCNGC	5 cut(s)	70, 404, 407, 533, 616
BmiI	GGNNCC	1 cut(s)	786
BmrI	ACTGGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	389, 626
BmuI	ACTGGG	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	452
BsaJI	CCNNGG	2 cut(s)	383, 839
BsaWI	WCCGGW	1 cut(s)	875
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	875
Bse1I	ACTGG	2 cut(s)	143, 788
Bse21I	CCTNAGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	383, 839
BseGI	GGATG	6 cut(s)	334, 422, 617, 703, 802, 817
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	143, 788
BseRI	GAGGAG	2 cut(s)	134, 400
BseXI	GCAGC	4 cut(s)	55, 414, 417, 543
BshFI	GGCC	1 cut(s)	86
BshTI	ACCGGT	1 cut(s)	875
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	876
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	316, 371, 631
BspACI	CCGC	1 cut(s)	615
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	786
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	875
BsrI	ACTGG	2 cut(s)	143, 788
BssAI	RCCGGY	1 cut(s)	875
BssECI	CCNNGG	2 cut(s)	383, 839
BssMI	GATC	3 cut(s)	316, 371, 631
BssT1I	CCWWGG	1 cut(s)	839
Bst4CI	ACNGT	3 cut(s)	63, 736, 871
Bst6I	CTCTTC	2 cut(s)	187, 556
BstBI	TTCGAA	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	529, 883
BstDEI	CTNAG	2 cut(s)	81, 760
BstF5I	GGATG	6 cut(s)	334, 422, 617, 703, 802, 817
BstKTI	GATC	3 cut(s)	319, 374, 634
BstMBI	GATC	3 cut(s)	316, 371, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 130, 540
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	4 cut(s)	55, 414, 417, 543
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	840
BstYI	RGATCY	1 cut(s)	316
Bsu36I	CCTNAGG	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	6 cut(s)	334, 422, 617, 703, 802, 817
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	2 cut(s)	529, 883
Cfr10I	RCCGGY	1 cut(s)	875
CspAI	ACCGGT	1 cut(s)	875
CviAII	CATG	3 cut(s)	238, 497, 793
DdeI	CTNAG	2 cut(s)	81, 760
DpnI	GATC	3 cut(s)	318, 373, 633
DpnII	GATC	3 cut(s)	316, 371, 631
Eam1104I	CTCTTC	2 cut(s)	187, 556
EarI	CTCTTC	2 cut(s)	187, 556
Eco130I	CCWWGG	1 cut(s)	839
Eco147I	AGGCCT	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	839
ErhI	CCWWGG	1 cut(s)	839
FaeI	CATG	3 cut(s)	241, 500, 796
FaiI	YATR	8 cut(s)	22, 188, 239, 351, 379, 473, 498, 794
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	3 cut(s)	237, 496, 792
Fnu4HI	GCNGC	5 cut(s)	69, 403, 406, 532, 615
FokI	GGATG	6 cut(s)	341, 429, 604, 710, 809, 824
Fsp4HI	GCNGC	5 cut(s)	69, 403, 406, 532, 615
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	5 cut(s)	69, 403, 406, 532, 615
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	876
Hin1II	CATG	3 cut(s)	241, 500, 796
HindIII	AAGCTT	2 cut(s)	40, 757
HinfI	GANTC	4 cut(s)	8, 245, 277, 454
HpaII	CCGG	1 cut(s)	876
HphI	GGTGA	1 cut(s)	748
Hpy188I	TCNGA	6 cut(s)	282, 328, 384, 691, 811, 823
Hpy188III	TCNNGA	3 cut(s)	47, 458, 635
Hpy99I	CGWCG	1 cut(s)	516
HpyCH4III	ACNGT	3 cut(s)	63, 736, 871
HpyCH4IV	ACGT	1 cut(s)	464
HpyCH4V	TGCA	2 cut(s)	402, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 130, 540
HpyF3I	CTNAG	2 cut(s)	81, 760
HpySE526I	ACGT	1 cut(s)	464
Hsp92II	CATG	3 cut(s)	241, 500, 796
Kzo9I	GATC	3 cut(s)	316, 371, 631
LmnI	GCTCC	4 cut(s)	37, 121, 387, 444
LpnPI	CCDG	9 cut(s)	68, 156, 267, 471, 513, 550, 609, 680, 801
Lsp1109I	GCAGC	4 cut(s)	55, 414, 417, 543
LweI	GCATC	2 cut(s)	389, 626
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	464
MaeIII	GTNAC	2 cut(s)	857, 871
MalI	GATC	3 cut(s)	318, 373, 633
MboI	GATC	3 cut(s)	316, 371, 631
MboII	GAAGA	6 cut(s)	62, 174, 286, 326, 543, 638
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	9 cut(s)	74, 113, 589, 683, 702, 715, 747, 815, 826
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	3 cut(s)	530, 669, 762
MnlI	CCTC	7 cut(s)	90, 112, 190, 235, 295, 378, 757
MseI	TTAA	4 cut(s)	38, 306, 660, 852
MslI	CAYNNNNRTG	1 cut(s)	495
MspI	CCGG	1 cut(s)	876
MwoI	GCNNNNNNNGC	3 cut(s)	92, 130, 540
NdeII	GATC	3 cut(s)	316, 371, 631
NlaIII	CATG	3 cut(s)	241, 500, 796
NlaIV	GGNNCC	1 cut(s)	786
NmuCI	GTSAC	1 cut(s)	857
NspV	TTCGAA	1 cut(s)	452
PceI	AGGCCT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	245, 277, 454
PinAI	ACCGGT	1 cut(s)	875
PkrI	GCNGC	5 cut(s)	70, 404, 407, 533, 616
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PshBI	ATTAAT	1 cut(s)	660
Psp1406I	AACGTT	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	786
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	38, 306, 660, 852
SatI	GCNGC	5 cut(s)	69, 403, 406, 532, 615
Sau3AI	GATC	3 cut(s)	316, 371, 631
SchI	GAGTC	1 cut(s)	2
SduI	GDGCHC	1 cut(s)	34
SfaNI	GCATC	2 cut(s)	389, 626
SfcI	CTRYAG	1 cut(s)	483
SfuI	TTCGAA	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	495
Sse9I	AATT	9 cut(s)	74, 113, 589, 683, 702, 715, 747, 815, 826
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	615
SspI	AATATT	3 cut(s)	610, 658, 850
SspMI	CTAG	1 cut(s)	215
StuI	AGGCCT	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	839
TaaI	ACNGT	3 cut(s)	63, 736, 871
TaiI	ACGT	1 cut(s)	467
TaqI	TCGA	2 cut(s)	452, 514
TasI	AATT	9 cut(s)	74, 113, 589, 683, 702, 715, 747, 815, 826
TauI	GCSGC	1 cut(s)	617
TfiI	GAWTC	3 cut(s)	245, 277, 454
Tru1I	TTAA	4 cut(s)	38, 306, 660, 852
Tru9I	TTAA	4 cut(s)	38, 306, 660, 852
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	4 cut(s)	68, 402, 405, 531
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	6 cut(s)	126, 457, 543, 714, 759, 828
TspRI	CASTG	1 cut(s)	487
VspI	ATTAAT	1 cut(s)	660
XapI	RAATTY	5 cut(s)	74, 589, 715, 747, 815
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.