Rh7AG158800
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011031
Physical Location & Seq
Reverse (-)
13297656 .. 13299362
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG158800.1

Sequence Viewer

Length: 918 bp
ATGGAGAACTGGGATTTGCAAGCTGTGGTGAGAGGGTGCAAAAACAATCTTGAAGGCCTTACTCATACCATGGAGTTCTCTCAATCATCTTGTTTTGGCTTTGCTCCTGTAACCATTGAAGAAGATGATGAGATTTTCCAGGCTTTTCCTCAACTGTTTGAAGCCACAACAGCTATGGATGAATTGGAGGAGCTTTACAAGCCCTTCTACCCAATTTTGCAGCATATTTCCCCCCCAACCATTCCTACTGCCTCCGTATCGGTTCCGCAAGAAGTCACTGCAGAAGAAAAAGAGCCAAAGAAGCTGAAAAGCATGAAAGAATCCTCACCCATGTCCAAAAGAAGCAGGAAGAATCAGAGCAAGAGGGTGGTGCAAGAGGTTCAGGAGAAAGATCTGTTCTCGGATGTGTGGGCGTGGCGAAAATATGGGCAAAAACCCATCAAGGGATCGCCATATCCGAGGAGCTATTACCGGTGCAGTAGCTCGAAAGGATGTTCAGCAAGAAAGCAAGTTGAAAGGAGCAATTCCAATCCAGAATTGTTCATCATAACCTACACTGCAGAACACAACCATGTTCATCCTACTCGGCGAAACTCTCTTGCTGGAAGCACAAGAACCAAGTTCCCCAAATCTCAGAAAAAAGAAAAGAGCAAAAATGAGTTTGTGCCTGTAAAAGAGGAAGCACAGAGACTGCCGGAAGAGGATGAAGTTAGTCGAGAGAGTGTGATGGATATGATGTTGGGAGACGAAGTTGTTCCGGGCTTTGAGGATTTTGATCAAAAGTTGGAGGAATTGAGCGAATTGATGGCGGAACCAGTCATGGTCGATGGTTTCTTTTCGGATCAGTTTCCAGATAATTACTTTCCGAGTTCTTGGTTCCTTGGTCACTCTACAAGTACTGTAACTGGAGCTTGCTGA

Protein Analysis

305

Amino Acids

34.91

Weight (kDa)

5.29

Isoelectric Point (pI)

62.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 135 - 191 1.5e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011031)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23550
fragaria_vesca FvH4_5g03210 FvH4_5g03210
malus_domestica MD06G1091200.v1.1 MD14G1112200.v1.1
prunus_persica Prupe.5G106700_v2.0.a1 Prupe.5G106700_v2.0.a1
pyrus_communis pycom06g08670 pycom14g10690
rosa_chinensis RchiOBHm_Chr7g0196571
rosa_laevigata RLG00000004005
rosa_multiflora Rmu_sc0006080.1_g000001
rosa_roxburghii Rroxscaffold_3G00259200
rosa_rugosa Rorug07G0034700 Rorug07G0034800
rosa_samantha Rh7AG158800 Rh7BG160800 Rh7CG167200 Rh7DG160000
rosa_wichuraiana Rw7G013880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 266, 809
AclWI GGATC 2 cut(s) 454, 849
AfaI GTAC 1 cut(s) 898
AfiI CCNNNNNNNGG 1 cut(s) 443
AgeI ACCGGT 1 cut(s) 471
AgsI TTSAA 4 cut(s) 53, 119, 161, 515
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 7 cut(s) 23, 173, 193, 304, 465, 483, 911
AluI AGCT 7 cut(s) 23, 173, 193, 304, 465, 483, 911
Alw26I GTCTC 2 cut(s) 682, 738
AlwI GGATC 2 cut(s) 454, 849
AlwNI CAGNNNCTG 1 cut(s) 691
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 220
AsiGI ACCGGT 1 cut(s) 471
Asp700I GAANNNNTTC 1 cut(s) 753
AsuC2I CCSGG 1 cut(s) 759
AsuHPI GGTGA 2 cut(s) 40, 318
BbvI GCAGC 1 cut(s) 232
BccI CCATC 4 cut(s) 446, 721, 799, 821
BciT130I CCWGG 1 cut(s) 140
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 1 cut(s) 759
BcoDI GTCTC 2 cut(s) 682, 738
BfmI CTRYAG 2 cut(s) 279, 558
BglII AGATCT 1 cut(s) 391
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
BmcAI AGTACT 1 cut(s) 898
Bme1390I CCNGG 2 cut(s) 140, 759
BmiI GGNNCC 3 cut(s) 264, 813, 878
BmrFI CCNGG 2 cut(s) 140, 759
BmrI ACTGGG 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 19
BpuMI CCSGG 1 cut(s) 759
BsaBI GATNNNNATC 1 cut(s) 774
BsaJI CCNNGG 3 cut(s) 69, 458, 880
BsaWI WCCGGW 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 735, 765
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 3 cut(s) 14, 815, 910
Bse8I GATNNNNATC 1 cut(s) 774
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 3 cut(s) 69, 458, 880
BseGI GGATG 5 cut(s) 184, 409, 497, 577, 709
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 1 cut(s) 647
BseNI ACTGG 3 cut(s) 14, 815, 910
BseRI GAGGAG 2 cut(s) 203, 475
BseXI GCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 496
BshFI GGCC 1 cut(s) 57
BshTI ACCGGT 1 cut(s) 471
BsiSI CCGG 3 cut(s) 472, 695, 758
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 2 cut(s) 682, 738
BsmBI CGTCTC 1 cut(s) 738
BsnI GGCC 1 cut(s) 57
Bsp143I GATC 4 cut(s) 391, 446, 775, 841
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 2 cut(s) 266, 809
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 646
BspLI GGNNCC 3 cut(s) 264, 813, 878
BspMAI CTGCAG 2 cut(s) 283, 562
BspPI GGATC 2 cut(s) 454, 849
BsrFI RCCGGY 1 cut(s) 471
BsrI ACTGG 3 cut(s) 14, 815, 910
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 3 cut(s) 69, 458, 880
BssMI GATC 4 cut(s) 391, 446, 775, 841
BssT1I CCWWGG 2 cut(s) 69, 880
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 156, 901
Bst6I CTCTTC 1 cut(s) 693
BstC8I GCNNGC 2 cut(s) 21, 913
BstDEI CTNAG 1 cut(s) 633
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 5 cut(s) 184, 409, 497, 577, 709
BstKTI GATC 4 cut(s) 394, 449, 778, 844
BstMAI GTCTC 2 cut(s) 682, 738
BstMBI GATC 4 cut(s) 391, 446, 775, 841
BstMWI GCNNNNNNNGC 3 cut(s) 170, 199, 301
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 138, 757
BstSFI CTRYAG 2 cut(s) 279, 558
BstV1I GCAGC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 5 cut(s) 184, 409, 497, 577, 709
BtsI GCAGTG 2 cut(s) 276, 555
BtsIMutI CAGTG 2 cut(s) 276, 555
Cac8I GCNNGC 2 cut(s) 21, 913
CaiI CAGNNNCTG 1 cut(s) 691
Cfr10I RCCGGY 1 cut(s) 471
Csp6I GTAC 1 cut(s) 897
CspAI ACCGGT 1 cut(s) 471
CviAII CATG 5 cut(s) 70, 313, 331, 572, 820
CviQI GTAC 1 cut(s) 897
DdeI CTNAG 1 cut(s) 633
DpnI GATC 4 cut(s) 393, 448, 777, 843
DpnII GATC 4 cut(s) 391, 446, 775, 841
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
EciI GGCGGA 1 cut(s) 824
Eco130I CCWWGG 2 cut(s) 69, 880
Eco147I AGGCCT 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 2 cut(s) 69, 880
ErhI CCWWGG 2 cut(s) 69, 880
Esp3I CGTCTC 1 cut(s) 738
FaeI CATG 5 cut(s) 73, 316, 334, 575, 823
FatI CATG 5 cut(s) 69, 312, 330, 571, 819
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 5 cut(s) 191, 416, 504, 564, 716
Fsp4HI GCNGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 221
HaeIII GGCC 1 cut(s) 57
HapII CCGG 3 cut(s) 472, 695, 758
Hin1II CATG 5 cut(s) 73, 316, 334, 575, 823
HinfI GANTC 2 cut(s) 320, 352
HpaII CCGG 3 cut(s) 472, 695, 758
HphI GGTGA 2 cut(s) 40, 318
Hpy188I TCNGA 6 cut(s) 357, 403, 459, 636, 841, 867
Hpy188III TCNNGA 5 cut(s) 50, 383, 533, 716, 851
HpyAV CCTTC 2 cut(s) 47, 214
HpyCH4III ACNGT 2 cut(s) 156, 901
HpyCH4V TGCA 7 cut(s) 19, 39, 220, 281, 373, 477, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 199, 301
HpyF3I CTNAG 1 cut(s) 633
Hsp92II CATG 5 cut(s) 73, 316, 334, 575, 823
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 4 cut(s) 391, 446, 775, 841
LmnI GCTCC 5 cut(s) 109, 190, 462, 519, 908
Lsp1109I GCAGC 1 cut(s) 232
MaeIII GTNAC 4 cut(s) 109, 274, 884, 901
MalI GATC 4 cut(s) 393, 448, 777, 843
MboI GATC 4 cut(s) 391, 446, 775, 841
MboII GAAGA 5 cut(s) 131, 134, 296, 361, 710
MflI RGATCY 1 cut(s) 391
MluCI AATT 7 cut(s) 182, 213, 523, 536, 791, 800, 856
MmeI TCCRAC 1 cut(s) 765
MroXI GAANNNNTTC 1 cut(s) 753
MslI CAYNNNNRTG 1 cut(s) 570
MspI CCGG 3 cut(s) 472, 695, 758
MspR9I CCNGG 2 cut(s) 140, 759
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 170, 199, 301
NciI CCSGG 1 cut(s) 759
NcoI CCATGG 1 cut(s) 69
NdeII GATC 4 cut(s) 391, 446, 775, 841
NlaIII CATG 5 cut(s) 73, 316, 334, 575, 823
NlaIV GGNNCC 3 cut(s) 264, 813, 878
NmeAIII GCCGAG 1 cut(s) 565
NmuCI GTSAC 2 cut(s) 274, 884
PceI AGGCCT 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 455
PdmI GAANNNNTTC 1 cut(s) 753
PfeI GAWTC 2 cut(s) 320, 352
PinAI ACCGGT 1 cut(s) 471
PkrI GCNGC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 3 cut(s) 264, 813, 878
PstI CTGCAG 2 cut(s) 283, 562
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 1 cut(s) 898
RsaNI GTAC 1 cut(s) 897
RseI CAYNNNNRTG 1 cut(s) 570
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 4 cut(s) 391, 446, 775, 841
ScaI AGTACT 1 cut(s) 898
ScrFI CCNGG 2 cut(s) 140, 759
SetI ASST 9 cut(s) 25, 175, 195, 306, 381, 467, 485, 554, 913
SfcI CTRYAG 2 cut(s) 279, 558
SmiMI CAYNNNNRTG 1 cut(s) 570
Sse9I AATT 7 cut(s) 182, 213, 523, 536, 791, 800, 856
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 2 cut(s) 266, 809
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 138, 757
StyI CCWWGG 2 cut(s) 69, 880
TaaI ACNGT 2 cut(s) 156, 901
TaqI TCGA 3 cut(s) 485, 715, 825
TasI AATT 7 cut(s) 182, 213, 523, 536, 791, 800, 856
TatI WGTACW 1 cut(s) 896
TfiI GAWTC 2 cut(s) 320, 352
TscAI CASTG 2 cut(s) 283, 562
TseFI GTSAC 2 cut(s) 274, 884
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 2 cut(s) 274, 884
TspDTI ATGAA 5 cut(s) 195, 329, 532, 566, 720
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 2 cut(s) 283, 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 753
ZrmI AGTACT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.