Rroxscaffold_3G00259200
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011031
Physical Location & Seq
Forward (+)
53595428 .. 53596904
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259200.1

Sequence Viewer

Length: 672 bp
ATGGAGAACTGGGATTTGCAAGCTGTGGTGAGAGGGTGCAAAAACAATCTTGAAGGCCTTACTAATACCATGGAGTTCTCTCAATCATCTTGTTTTGGCTTTGCTCCTGTAACCATTGAAGAAGATGATGAGATTTTCCAGGCTTTTCCTCAACTGTTTGAAGCCACAACAGCTTTGGATGAATTGGAGGAGCTTTACAAGCCCTTCTACCCAATTTTGCAGCCTATTTCCCCACCAACCATTCCTACCGCCTCCGTATCCGTTCCGCAAGAAGTCACTGCAGAAGAAAAAGGGCCAAAGAAGCTGAAAAGCGTGAAAGAATCCTCACCCATGTCCAAAAGAAGCCGGAAGAATCAGAGCAAGAGGGTGGTGCAAGAGGTTCAGGAGAAAGATCTTTTCTCGGATGTGTGGGCGTGGCGAAAATATGGGCAAAAACCCATCAAGGGATCGCCATATCCGAGGAGCTATTACCGGTGCAGTAGCTCGAAAGGATGTTCAGCAAGAAAGCAAGTTGAAAGGAGCAATTCCAATCCAGAATTGTTCATCATAACCTACACTGCAGAACACAACCATGTTCATCCTACTCGGCGAAACTCTCTTGCTGGAAGCACAAGAACCAAGTTCCCCAAATCTCAGAAAAAGAAAAGAGCAAAAATGAGTTTGTGCCTGTAA

Protein Analysis

223

Amino Acids

25.43

Weight (kDa)

9.37

Isoelectric Point (pI)

66.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 135 - 191 8.9e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011031)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23550
fragaria_vesca FvH4_5g03210 FvH4_5g03210
malus_domestica MD06G1091200.v1.1 MD14G1112200.v1.1
prunus_persica Prupe.5G106700_v2.0.a1 Prupe.5G106700_v2.0.a1
pyrus_communis pycom06g08670 pycom14g10690
rosa_chinensis RchiOBHm_Chr7g0196571
rosa_laevigata RLG00000004005
rosa_multiflora Rmu_sc0006080.1_g000001
rosa_roxburghii Rroxscaffold_3G00259200
rosa_rugosa Rorug07G0034700 Rorug07G0034800
rosa_samantha Rh7AG158800 Rh7BG160800 Rh7CG167200 Rh7DG160000
rosa_wichuraiana Rw7G013880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 249, 266
AclWI GGATC 1 cut(s) 454
AfiI CCNNNNNNNGG 1 cut(s) 443
AgeI ACCGGT 1 cut(s) 471
AgsI TTSAA 4 cut(s) 53, 119, 161, 515
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 6 cut(s) 23, 173, 193, 304, 465, 483
AluI AGCT 6 cut(s) 23, 173, 193, 304, 465, 483
AlwI GGATC 1 cut(s) 454
AoxI GGCC 2 cut(s) 55, 293
ApeKI GCWGC 1 cut(s) 220
AsiGI ACCGGT 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 2 cut(s) 40, 318
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 140
BciVI GTATCC 1 cut(s) 268
BfmI CTRYAG 2 cut(s) 279, 558
BfuI GTATCC 1 cut(s) 268
BglII AGATCT 1 cut(s) 391
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 140
BmrI ACTGGG 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 69, 458
BsaWI WCCGGW 1 cut(s) 471
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 69, 458
BseGI GGATG 4 cut(s) 184, 409, 497, 577
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 1 cut(s) 647
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 2 cut(s) 203, 475
BseXI GCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 496
BshFI GGCC 2 cut(s) 57, 295
BshTI ACCGGT 1 cut(s) 471
BsiSI CCGG 2 cut(s) 346, 472
BslI CCNNNNNNNGG 1 cut(s) 443
BsnI GGCC 2 cut(s) 57, 295
Bsp143I GATC 2 cut(s) 391, 446
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 2 cut(s) 249, 266
BspANI GGCC 2 cut(s) 57, 295
BspCNI CTCAG 1 cut(s) 646
BspMAI CTGCAG 2 cut(s) 283, 562
BspPI GGATC 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 471
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 2 cut(s) 69, 458
BssMI GATC 2 cut(s) 391, 446
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 633
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 4 cut(s) 184, 409, 497, 577
BstKTI GATC 2 cut(s) 394, 449
BstMBI GATC 2 cut(s) 391, 446
BstMWI GCNNNNNNNGC 3 cut(s) 170, 199, 301
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 2 cut(s) 279, 558
BstV1I GCAGC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 2 cut(s) 57, 295
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 4 cut(s) 184, 409, 497, 577
BtsI GCAGTG 2 cut(s) 276, 555
BtsIMutI CAGTG 2 cut(s) 276, 555
Cac8I GCNNGC 1 cut(s) 21
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 293
CspAI ACCGGT 1 cut(s) 471
CviAII CATG 3 cut(s) 70, 331, 572
DdeI CTNAG 1 cut(s) 633
DpnI GATC 2 cut(s) 393, 448
DpnII GATC 2 cut(s) 391, 446
Eco130I CCWWGG 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 3 cut(s) 73, 334, 575
FaiI YATR 6 cut(s) 71, 332, 426, 454, 548, 573
FatI CATG 3 cut(s) 69, 330, 571
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 4 cut(s) 191, 416, 504, 564
Fsp4HI GCNGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 221
HaeIII GGCC 2 cut(s) 57, 295
HapII CCGG 2 cut(s) 346, 472
Hin1II CATG 3 cut(s) 73, 334, 575
HinfI GANTC 2 cut(s) 320, 352
HpaII CCGG 2 cut(s) 346, 472
HphI GGTGA 2 cut(s) 40, 318
Hpy188I TCNGA 4 cut(s) 357, 403, 459, 636
Hpy188III TCNNGA 3 cut(s) 50, 383, 533
HpyAV CCTTC 2 cut(s) 47, 214
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 7 cut(s) 19, 39, 220, 281, 373, 477, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 199, 301
HpyF3I CTNAG 1 cut(s) 633
Hsp92II CATG 3 cut(s) 73, 334, 575
Kzo9I GATC 2 cut(s) 391, 446
LmnI GCTCC 4 cut(s) 109, 190, 462, 519
LpnPI CCDG 8 cut(s) 120, 125, 152, 359, 368, 485, 546, 588
Lsp1109I GCAGC 1 cut(s) 232
MaeIII GTNAC 2 cut(s) 109, 274
MalI GATC 2 cut(s) 393, 448
MboI GATC 2 cut(s) 391, 446
MboII GAAGA 4 cut(s) 131, 134, 296, 361
MflI RGATCY 1 cut(s) 391
MluCI AATT 4 cut(s) 182, 213, 523, 536
MnlI CCTC 8 cut(s) 26, 159, 181, 262, 334, 357, 370, 453
MslI CAYNNNNRTG 1 cut(s) 570
MspI CCGG 2 cut(s) 346, 472
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 170, 199, 301
NcoI CCATGG 1 cut(s) 69
NdeII GATC 2 cut(s) 391, 446
NlaIII CATG 3 cut(s) 73, 334, 575
NmeAIII GCCGAG 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 274
PceI AGGCCT 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 455
PfeI GAWTC 2 cut(s) 320, 352
PinAI ACCGGT 1 cut(s) 471
PkrI GCNGC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspPI GGNCC 1 cut(s) 293
PstI CTGCAG 2 cut(s) 283, 562
PsuI RGATCY 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 570
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 2 cut(s) 391, 446
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 140
SetI ASST 8 cut(s) 25, 175, 195, 306, 381, 467, 485, 554
SfcI CTRYAG 2 cut(s) 279, 558
SmiMI CAYNNNNRTG 1 cut(s) 570
Sse9I AATT 4 cut(s) 182, 213, 523, 536
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 2 cut(s) 249, 266
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 485
TasI AATT 4 cut(s) 182, 213, 523, 536
TfiI GAWTC 2 cut(s) 320, 352
TscAI CASTG 2 cut(s) 283, 562
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 195, 532, 566
TspGWI ACGGA 2 cut(s) 244, 250
TspRI CASTG 2 cut(s) 283, 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.