Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006080.1

Orthogroup ID

OG0011031

Physical Location & Seq

Genomic Coordinates Reverse (-)

1621 .. 2703

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006080.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atggagaactgggatttgcaagctgtggtgagagggtgcaaaaacaatcttgaaggccttactcataccatggagttctctcaatcatcttgttttggctttgctcctgtaaccattgaagaagatgatgagattttccaggcttttcctcaactgtttgaagccacaacagctttggatgaattggaggagctttacaagcccttctacccaattttgcagcctatttccccaccaaccattcctatcgcctccgtatcggttccgcaagaagtcactgcagaagaaaaagagccaaagaagctgaaaagcgtgaaagaatcctcacccatgtccaaaagaagcaggaagaatcagagcaagagggtggtgcaagaggttcaggagaaagatctgttctcggatgtgtgggcgtggcgaaaatatgggcaaaaacccatcaagggatcgccatatccgaggagctattaccggtgcagtagctcgaaaggatgttcagcaagaaagcaagttgaaaggagcaattccaatccagaattgttcatcataacctacactgcagaacacaaccatgttcatcctactcggcgaaactctcttgctggaagcacaagaaccaagttccccaaatctcagaaaaaagaaaagagcaaaaatgagtttgtgcctgtaaaagaggaagcacagagactgccggaagaggatgaagttagtcacgagagtgtgatggatatgatgttgggagatgaagttgttccgggctttgaggattttgatcaaaagttggaggaattgagcgaattgatggccgaaccagtcatggccgatggtttcttttcggatcagtttccagataattactttccaagttcttggttccttggtcactctacaagtactgtaactggagcttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

305

Amino Acids

34.79

Weight (kDa)

5.22

Isoelectric Point (pI)

61.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23550
fragaria_vesca	FvH4_5g03210 FvH4_5g03210
malus_domestica	MD06G1091200.v1.1 MD14G1112200.v1.1
prunus_persica	Prupe.5G106700_v2.0.a1 Prupe.5G106700_v2.0.a1
pyrus_communis	pycom06g08670 pycom14g10690
rosa_chinensis	RchiOBHm_Chr7g0196571
rosa_laevigata	RLG00000004005
rosa_multiflora	Rmu_sc0006080.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259200
rosa_rugosa	Rorug07G0034700 Rorug07G0034800
rosa_samantha	Rh7AG158800 Rh7BG160800 Rh7CG167200 Rh7DG160000
rosa_wichuraiana	Rw7G013880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	2 cut(s)	454, 849
AcoI	YGGCCR	2 cut(s)	807, 822
AfaI	GTAC	1 cut(s)	898
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgeI	ACCGGT	1 cut(s)	471
AgsI	TTSAA	4 cut(s)	53, 119, 161, 515
AjnI	CCWGG	1 cut(s)	138
AleI	CACNNNNGTG	1 cut(s)	720
AluBI	AGCT	7 cut(s)	23, 173, 193, 304, 465, 483, 911
AluI	AGCT	7 cut(s)	23, 173, 193, 304, 465, 483, 911
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	454, 849
AlwNI	CAGNNNCTG	1 cut(s)	691
AoxI	GGCC	3 cut(s)	55, 807, 822
ApeKI	GCWGC	1 cut(s)	220
AsiGI	ACCGGT	1 cut(s)	471
Asp700I	GAANNNNTTC	1 cut(s)	753
AsuC2I	CCSGG	1 cut(s)	759
AsuHPI	GGTGA	2 cut(s)	40, 318
BauI	CACGAG	1 cut(s)	716
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	4 cut(s)	446, 721, 799, 821
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	759
BcoDI	GTCTC	1 cut(s)	682
BfmI	CTRYAG	2 cut(s)	279, 558
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmcAI	AGTACT	1 cut(s)	898
Bme1390I	CCNGG	2 cut(s)	140, 759
BmiI	GGNNCC	2 cut(s)	264, 878
BmrFI	CCNGG	2 cut(s)	140, 759
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	759
BsaBI	GATNNNNATC	1 cut(s)	774
BsaJI	CCNNGG	3 cut(s)	69, 458, 880
BsaWI	WCCGGW	1 cut(s)	471
BsaXI	ACNNNNNCTCC	2 cut(s)	735, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	3 cut(s)	14, 815, 910
Bse8I	GATNNNNATC	1 cut(s)	774
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	3 cut(s)	69, 458, 880
BseGI	GGATG	5 cut(s)	184, 409, 497, 577, 709
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	647
BseNI	ACTGG	3 cut(s)	14, 815, 910
BseRI	GAGGAG	2 cut(s)	203, 475
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	3 cut(s)	57, 809, 824
BshTI	ACCGGT	1 cut(s)	471
BsiSI	CCGG	3 cut(s)	472, 695, 758
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	682
BsnI	GGCC	3 cut(s)	57, 809, 824
Bsp143I	GATC	4 cut(s)	391, 446, 775, 841
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	3 cut(s)	57, 809, 824
BspCNI	CTCAG	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	264, 878
BspMAI	CTGCAG	2 cut(s)	283, 562
BspPI	GGATC	2 cut(s)	454, 849
BsrFI	RCCGGY	1 cut(s)	471
BsrI	ACTGG	3 cut(s)	14, 815, 910
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	3 cut(s)	69, 458, 880
BssMI	GATC	4 cut(s)	391, 446, 775, 841
BssSI	CACGAG	1 cut(s)	716
BssT1I	CCWWGG	2 cut(s)	69, 880
Bst2BI	CACGAG	1 cut(s)	716
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	156, 901
Bst6I	CTCTTC	1 cut(s)	693
BstC8I	GCNNGC	2 cut(s)	21, 913
BstDEI	CTNAG	1 cut(s)	633
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	5 cut(s)	184, 409, 497, 577, 709
BstKTI	GATC	4 cut(s)	394, 449, 778, 844
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	4 cut(s)	391, 446, 775, 841
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 199, 301
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	138, 757
BstSFI	CTRYAG	2 cut(s)	279, 558
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	873
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	3 cut(s)	57, 809, 824
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	5 cut(s)	184, 409, 497, 577, 709
BtsI	GCAGTG	2 cut(s)	276, 555
BtsIMutI	CAGTG	2 cut(s)	276, 555
Cac8I	GCNNGC	2 cut(s)	21, 913
CaiI	CAGNNNCTG	1 cut(s)	691
Cfr10I	RCCGGY	1 cut(s)	471
Csp6I	GTAC	1 cut(s)	897
CspAI	ACCGGT	1 cut(s)	471
CviAII	CATG	4 cut(s)	70, 331, 572, 820
CviQI	GTAC	1 cut(s)	897
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	4 cut(s)	393, 448, 777, 843
DpnII	GATC	4 cut(s)	391, 446, 775, 841
EaeI	YGGCCR	2 cut(s)	807, 822
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
Eco130I	CCWWGG	2 cut(s)	69, 880
Eco147I	AGGCCT	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	2 cut(s)	69, 880
ErhI	CCWWGG	2 cut(s)	69, 880
FaeI	CATG	4 cut(s)	73, 334, 575, 823
FaiI	YATR	9 cut(s)	66, 71, 332, 426, 454, 548, 573, 734, 821
FatI	CATG	4 cut(s)	69, 330, 571, 819
FbaI	TGATCA	1 cut(s)	775
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	5 cut(s)	191, 416, 504, 564, 716
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
HaeIII	GGCC	3 cut(s)	57, 809, 824
HapII	CCGG	3 cut(s)	472, 695, 758
Hin1II	CATG	4 cut(s)	73, 334, 575, 823
HinfI	GANTC	2 cut(s)	320, 352
HpaII	CCGG	3 cut(s)	472, 695, 758
HphI	GGTGA	2 cut(s)	40, 318
Hpy188I	TCNGA	5 cut(s)	357, 403, 459, 636, 841
Hpy188III	TCNNGA	5 cut(s)	50, 383, 533, 716, 851
HpyAV	CCTTC	2 cut(s)	47, 214
HpyCH4III	ACNGT	2 cut(s)	156, 901
HpyCH4V	TGCA	7 cut(s)	19, 39, 220, 281, 373, 477, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 199, 301
HpyF3I	CTNAG	1 cut(s)	633
Hsp92II	CATG	4 cut(s)	73, 334, 575, 823
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	4 cut(s)	391, 446, 775, 841
LmnI	GCTCC	5 cut(s)	109, 190, 462, 519, 908
Lsp1109I	GCAGC	1 cut(s)	232
MaeIII	GTNAC	5 cut(s)	109, 274, 713, 884, 901
MalI	GATC	4 cut(s)	393, 448, 777, 843
MboI	GATC	4 cut(s)	391, 446, 775, 841
MboII	GAAGA	5 cut(s)	131, 134, 296, 361, 710
MflI	RGATCY	1 cut(s)	391
MluCI	AATT	7 cut(s)	182, 213, 523, 536, 791, 800, 856
MmeI	TCCRAC	1 cut(s)	765
MroXI	GAANNNNTTC	1 cut(s)	753
MslI	CAYNNNNRTG	2 cut(s)	570, 720
MspI	CCGG	3 cut(s)	472, 695, 758
MspR9I	CCNGG	2 cut(s)	140, 759
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	170, 199, 301
NciI	CCSGG	1 cut(s)	759
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	4 cut(s)	391, 446, 775, 841
NlaIII	CATG	4 cut(s)	73, 334, 575, 823
NlaIV	GGNNCC	2 cut(s)	264, 878
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	3 cut(s)	274, 713, 884
OliI	CACNNNNGTG	1 cut(s)	720
PceI	AGGCCT	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	2 cut(s)	320, 352
PinAI	ACCGGT	1 cut(s)	471
PkrI	GCNGC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	264, 878
PstI	CTGCAG	2 cut(s)	283, 562
PstNI	CAGNNNCTG	1 cut(s)	691
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	1 cut(s)	898
RsaNI	GTAC	1 cut(s)	897
RseI	CAYNNNNRTG	2 cut(s)	570, 720
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	4 cut(s)	391, 446, 775, 841
ScaI	AGTACT	1 cut(s)	898
ScrFI	CCNGG	2 cut(s)	140, 759
SetI	ASST	9 cut(s)	25, 175, 195, 306, 381, 467, 485, 554, 913
SfcI	CTRYAG	2 cut(s)	279, 558
SmiMI	CAYNNNNRTG	2 cut(s)	570, 720
Sse9I	AATT	7 cut(s)	182, 213, 523, 536, 791, 800, 856
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	266
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	138, 757
StyI	CCWWGG	2 cut(s)	69, 880
TaaI	ACNGT	2 cut(s)	156, 901
TaqI	TCGA	1 cut(s)	485
TasI	AATT	7 cut(s)	182, 213, 523, 536, 791, 800, 856
TatI	WGTACW	1 cut(s)	896
TfiI	GAWTC	2 cut(s)	320, 352
TscAI	CASTG	2 cut(s)	283, 562
TseFI	GTSAC	3 cut(s)	274, 713, 884
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	3 cut(s)	274, 713, 884
TspDTI	ATGAA	5 cut(s)	195, 532, 566, 720, 762
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	283, 562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	753
ZrmI	AGTACT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.