Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008447

Physical Location & Seq

Genomic Coordinates Reverse (-)

2471400 .. 2475733

Gene Structure 4334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0034800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCCAGCTGTCTTCTCTGCTTGTCACAGAGTACTCAAAGAGGTTTGTACAATGCTGCCAGGTTTTTCTCCTGCTAAAGTGTTGGATTTTGGTGCTGGCACGGGTTCGGCTTTCTGGGCACTACGAGAAGTCGGGCCGAATTCCTTGGAGAAAGTTAACTTAGTAAAGCCATCACAATCAATGCAGCGTGCAGGCCAGAGCCTTATACAAGGTCAGAAGAACTTAACACTTATTCACAGTTATGCTACCCTCCAATCAATGACTAAAAGCATCAACAAATCAGAGAGAGAACATGACCTTGTAATTGCTTCCTATGTGCTTGGAGAGATACCATCGCTGAAGGATCGAATTACTGTAGTACGCCAACTTTGGGATCTTACGTGGGAAGTCCTGCAAAAAATACTCTTATCAAGTGCAGGGAAGAAAACGGTGGAGTACACAGTGCCATTAGTAGAGAAGACTAAAGACATGGCCATGTTTGCAGGTAAGACCACTCTGCATTATGTTGGTCATTTTGCGGTGGATTTGAAGGACAAGGCCACTGTGGTAGGTTGGACTGCAGCACACTACGCAACTGAGGCAGCAGTGGAGGGAACCAAAGCAGCTGCAAGGTTGGAGCTCAAATGCACAGCAAGGAGGGCAGGAATGGAGCTCAAATGCACAGCAAGGGAGGCAGGGGGGATACTAGAACATGATCTACTTAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008094 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061458 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

236

Amino Acids

25.78

Weight (kDa)

9.11

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rsm22	PF09243	1 - 126	3.4e-17	Mitochondrial small ribosomal subunit Rsm22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63990 AT1G63990
fragaria_vesca	FvH4_5g03200 FvH4_5g03200 FvH4_5g03200 FvH4_5g03200 FvH4_5g03200
malus_domestica	MD14G1112000.v1.1
prunus_persica	Prupe.5G106600_v2.0.a1
pyrus_communis	pycom14g10670
rosa_chinensis	RchiOBHm_Chr7g0196581
rosa_multiflora	Rmu_co8280957.1_g000001 Rmu_sc0006080.1_g000002 Rmu_sc0040598.1_g000001 Rmu_sc0040599.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259190
rosa_rugosa	Rorug07G0034800 Rorug07G0034900
rosa_samantha	Rh7AG158900 Rh7BG160900 Rh7CG167300 Rh7DG160100
rosa_wichuraiana	Rw7G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	473
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	2 cut(s)	351, 381
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	4 cut(s)	33, 49, 360, 437
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	4 cut(s)	8, 605, 619, 652
AluI	AGCT	4 cut(s)	8, 605, 619, 652
Alw21I	GWGCWC	2 cut(s)	621, 654
AlwI	GGATC	2 cut(s)	351, 381
AoxI	GGCC	4 cut(s)	134, 193, 471, 537
ApeKI	GCWGC	6 cut(s)	55, 184, 560, 581, 602, 605
ApoI	RAATTY	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	473
BanII	GRGCYC	2 cut(s)	621, 654
BbsI	GAAGAC	2 cut(s)	4, 464
Bbv12I	GWGCWC	2 cut(s)	621, 654
BbvI	GCAGC	6 cut(s)	42, 196, 572, 592, 593, 614
BccI	CCATC	2 cut(s)	178, 340
BciT130I	CCWGG	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	675
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	2 cut(s)	354, 558
BfuAI	ACCTGC	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	675
BisI	GCNGC	6 cut(s)	56, 185, 561, 582, 603, 606
BlsI	GCNGC	6 cut(s)	57, 186, 562, 583, 604, 607
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	4, 464
BsaAI	YACGTR	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	567
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	6 cut(s)	42, 196, 572, 592, 593, 614
BsgI	GTGCAG	2 cut(s)	210, 435
BshFI	GGCC	4 cut(s)	136, 195, 473, 539
BsiHKAI	GWGCWC	2 cut(s)	621, 654
BslI	CCNNNNNNNGG	1 cut(s)	370
BsnI	GGCC	4 cut(s)	136, 195, 473, 539
Bsp1286I	GDGCHC	3 cut(s)	121, 621, 654
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	343, 373, 694
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	4 cut(s)	136, 195, 473, 539
BspCNI	CTCAG	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	595
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	2 cut(s)	351, 381
BsrGI	TGTACA	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	343, 373, 694
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	5 cut(s)	239, 355, 430, 442, 544
BstAUI	TGTACA	1 cut(s)	47
BstBAI	YACGTR	1 cut(s)	381
BstC8I	GCNNGC	4 cut(s)	6, 97, 189, 193
BstDEI	CTNAG	3 cut(s)	160, 576, 701
BstKTI	GATC	3 cut(s)	346, 376, 697
BstMBI	GATC	3 cut(s)	343, 373, 694
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 479, 569, 578, 638, 671
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	2 cut(s)	354, 558
BstSLI	GKGCMC	1 cut(s)	121
BstV1I	GCAGC	6 cut(s)	42, 196, 572, 592, 593, 614
BstV2I	GAAGAC	2 cut(s)	4, 464
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	675
BsuRI	GGCC	4 cut(s)	136, 195, 473, 539
BtgZI	GCGATG	1 cut(s)	318
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	3 cut(s)	447, 540, 591
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	4 cut(s)	6, 97, 189, 193
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	4 cut(s)	32, 48, 359, 436
CviAII	CATG	4 cut(s)	293, 469, 475, 692
CviQI	GTAC	4 cut(s)	32, 48, 359, 436
DdeI	CTNAG	3 cut(s)	160, 576, 701
DpnI	GATC	3 cut(s)	345, 375, 696
DpnII	GATC	3 cut(s)	343, 373, 694
EaeI	YGGCCR	1 cut(s)	471
Ecl136II	GAGCTC	2 cut(s)	619, 652
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	621, 654
Eco53kI	GAGCTC	2 cut(s)	619, 652
Eco57I	CTGAAG	1 cut(s)	359
EcoICRI	GAGCTC	2 cut(s)	619, 652
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	621, 654
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	296, 472, 478, 695
FaiI	YATR	8 cut(s)	206, 243, 294, 315, 470, 476, 504, 693
FatI	CATG	4 cut(s)	292, 468, 474, 691
Fnu4HI	GCNGC	6 cut(s)	56, 185, 561, 582, 603, 606
FriOI	GRGCYC	2 cut(s)	621, 654
Fsp4HI	GCNGC	6 cut(s)	56, 185, 561, 582, 603, 606
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	6 cut(s)	56, 185, 561, 582, 603, 606
HaeIII	GGCC	4 cut(s)	136, 195, 473, 539
Hin1II	CATG	4 cut(s)	296, 472, 478, 695
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HpaI	GTTAAC	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	157, 438
Hpy188I	TCNGA	2 cut(s)	216, 283
Hpy8I	GTNNAC	2 cut(s)	157, 438
HpyAV	CCTTC	2 cut(s)	334, 523
HpyCH4III	ACNGT	5 cut(s)	239, 355, 430, 442, 544
HpyCH4IV	ACGT	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 479, 569, 578, 638, 671
HpyF3I	CTNAG	3 cut(s)	160, 576, 701
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	4 cut(s)	296, 472, 478, 695
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	343, 373, 694
LmnI	GCTCC	2 cut(s)	616, 649
Lsp1109I	GCAGC	6 cut(s)	42, 196, 572, 592, 593, 614
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	3 cut(s)	345, 375, 696
MboI	GATC	3 cut(s)	343, 373, 694
MboII	GAAGA	4 cut(s)	4, 229, 433, 469
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	3 cut(s)	121, 621, 654
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	3 cut(s)	139, 303, 348
MluNI	TGGCCA	1 cut(s)	473
MmeI	TCCRAC	3 cut(s)	63, 533, 594
MnlI	CCTC	6 cut(s)	34, 260, 571, 583, 630, 664
Mox20I	TGGCCA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	2 cut(s)	156, 224
MslI	CAYNNNNRTG	2 cut(s)	240, 473
Msp20I	TGGCCA	1 cut(s)	473
MspA1I	CMGCKG	2 cut(s)	8, 605
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	6 cut(s)	116, 479, 569, 578, 638, 671
NdeII	GATC	3 cut(s)	343, 373, 694
NlaIII	CATG	4 cut(s)	296, 472, 478, 695
NlaIV	GGNNCC	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	23
PkrI	GCNGC	6 cut(s)	57, 186, 562, 583, 604, 607
Ppu21I	YACGTR	1 cut(s)	381
Psp124BI	GAGCTC	2 cut(s)	621, 654
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	1 cut(s)	134
PsrI	GAACNNNNNNTAC	1 cut(s)	681
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	373
PvuII	CAGCTG	2 cut(s)	8, 605
RsaI	GTAC	4 cut(s)	33, 49, 360, 437
RsaNI	GTAC	4 cut(s)	32, 48, 359, 436
RseI	CAYNNNNRTG	2 cut(s)	240, 473
SacI	GAGCTC	2 cut(s)	621, 654
SaqAI	TTAA	2 cut(s)	156, 224
SatI	GCNGC	6 cut(s)	56, 185, 561, 582, 603, 606
Sau3AI	GATC	3 cut(s)	343, 373, 694
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	3 cut(s)	121, 621, 654
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	2 cut(s)	354, 558
SmiMI	CAYNNNNRTG	2 cut(s)	240, 473
Sse9I	AATT	3 cut(s)	139, 303, 348
SsiI	CCGC	1 cut(s)	518
SspMI	CTAG	1 cut(s)	686
SstI	GAGCTC	2 cut(s)	621, 654
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	5 cut(s)	239, 355, 430, 442, 544
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	1 cut(s)	346
TasI	AATT	3 cut(s)	139, 303, 348
TatI	WGTACW	3 cut(s)	31, 47, 435
Tru1I	TTAA	2 cut(s)	156, 224
Tru9I	TTAA	2 cut(s)	156, 224
TscAI	CASTG	3 cut(s)	447, 547, 591
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	6 cut(s)	55, 184, 560, 581, 602, 605
Tsp45I	GTSAC	1 cut(s)	23
TspRI	CASTG	3 cut(s)	447, 547, 591
XapI	RAATTY	1 cut(s)	139
XspI	CTAG	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.