Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040599.1

Orthogroup ID

OG0008447

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 432

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040599.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 263 bp

atggaggacgcctgcaaatcggcgctgaacttcttctccgatcagcagctctgctacgccgacatcctcaccccgccggaggttatagctcgaatccaagtcgccgtcctcaacttcctccgaatcctgacctcgccggaccccgcaatctccgacctccctctcccggggcctggtgactcagacttcatggattttcctgacgcgctcgttctgcaccagatcgcttctgaggcccaatgccgccaaagcctttatcagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008094 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061458 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

87

Amino Acids

9.6

Weight (kDa)

4.05

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63990 AT1G63990
fragaria_vesca	FvH4_5g03200 FvH4_5g03200 FvH4_5g03200 FvH4_5g03200 FvH4_5g03200
malus_domestica	MD14G1112000.v1.1
prunus_persica	Prupe.5G106600_v2.0.a1
pyrus_communis	pycom14g10670
rosa_chinensis	RchiOBHm_Chr7g0196581
rosa_multiflora	Rmu_co8280957.1_g000001 Rmu_sc0006080.1_g000002 Rmu_sc0040598.1_g000001 Rmu_sc0040599.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259190
rosa_rugosa	Rorug07G0034800 Rorug07G0034900
rosa_samantha	Rh7AG158900 Rh7BG160900 Rh7CG167300 Rh7DG160100
rosa_wichuraiana	Rw7G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	206
AciI	CCGC	3 cut(s)	74, 144, 244
AcyI	GRCGYC	1 cut(s)	9
AfiI	CCNNNNNNNGG	4 cut(s)	79, 166, 167, 173
AjnI	CCWGG	1 cut(s)	172
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AluBI	AGCT	2 cut(s)	49, 89
AluI	AGCT	2 cut(s)	49, 89
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	170, 234
ApeKI	GCWGC	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	25, 208
AspS9I	GGNCC	3 cut(s)	139, 170, 235
AsuC2I	CCSGG	2 cut(s)	167, 168
AsuHPI	GGTGA	2 cut(s)	61, 188
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	167, 168
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	2 cut(s)	47, 244
BlsI	GCNGC	2 cut(s)	48, 245
Bme1390I	CCNGG	3 cut(s)	167, 168, 174
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	139, 170, 235
BmiI	GGNNCC	2 cut(s)	141, 171
BmrFI	CCNGG	3 cut(s)	167, 168, 174
BpuMI	CCSGG	2 cut(s)	167, 168
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	166, 167
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 166, 167, 173
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	166, 167
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	4 cut(s)	79, 166, 167, 173
BseMII	CTCAG	2 cut(s)	195, 222
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	2 cut(s)	172, 236
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	77, 137, 167
BslI	CCNNNNNNNGG	4 cut(s)	79, 166, 167, 173
BsnI	GGCC	2 cut(s)	172, 236
BsoBI	CYCGRG	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	40, 222
BspACI	CCGC	3 cut(s)	74, 144, 244
BspANI	GGCC	2 cut(s)	172, 236
BspCNI	CTCAG	2 cut(s)	194, 223
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	141, 171
BssECI	CCNNGG	2 cut(s)	166, 167
BssMI	GATC	2 cut(s)	40, 222
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	181, 231
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 208
BstKTI	GATC	2 cut(s)	43, 225
BstMBI	GATC	2 cut(s)	40, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	214, 233, 249
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	3 cut(s)	165, 166, 172
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	172, 236
BtsCI	GGATG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	2 cut(s)	25, 208
Cfr13I	GGNCC	3 cut(s)	139, 170, 235
Cfr9I	CCCGGG	1 cut(s)	166
CseI	GACGC	2 cut(s)	17, 212
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	5 cut(s)	49, 89, 172, 236, 252
CviKI_1	RGCY	5 cut(s)	49, 89, 172, 236, 252
DdeI	CTNAG	2 cut(s)	181, 231
DpnI	GATC	2 cut(s)	42, 224
DpnII	GATC	2 cut(s)	40, 222
Eco47I	GGWCC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	193
FaiI	YATR	2 cut(s)	86, 191
FatI	CATG	1 cut(s)	189
FauI	CCCGC	2 cut(s)	81, 151
Fnu4HI	GCNGC	2 cut(s)	47, 244
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	47, 244
GlaI	GCGC	2 cut(s)	24, 207
GluI	GCNGC	2 cut(s)	47, 244
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	172, 236
HapII	CCGG	3 cut(s)	77, 137, 167
HgaI	GACGC	2 cut(s)	17, 212
HhaI	GCGC	2 cut(s)	25, 208
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	2 cut(s)	23, 206
HinP1I	GCGC	2 cut(s)	23, 206
HinfI	GANTC	3 cut(s)	93, 123, 179
HpaII	CCGG	3 cut(s)	77, 137, 167
HphI	GGTGA	2 cut(s)	61, 188
Hpy188I	TCNGA	6 cut(s)	40, 122, 154, 184, 232, 261
Hpy188III	TCNNGA	2 cut(s)	127, 200
HpyCH4V	TGCA	2 cut(s)	15, 217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	214, 233, 249
HpyF3I	CTNAG	2 cut(s)	181, 231
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	2 cut(s)	23, 206
Kzo9I	GATC	2 cut(s)	40, 222
LpnPI	CCDG	9 cut(s)	25, 90, 140, 150, 159, 180, 186, 213, 233
Lsp1109I	GCAGC	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	2 cut(s)	42, 224
MboI	GATC	2 cut(s)	40, 222
MboII	GAAGA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	8 cut(s)	73, 77, 119, 128, 142, 167, 171, 226
MroXI	GAANNNNTTC	1 cut(s)	32
MspI	CCGG	3 cut(s)	77, 137, 167
MspR9I	CCNGG	3 cut(s)	167, 168, 174
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	214, 233, 249
NciI	CCSGG	2 cut(s)	167, 168
NdeII	GATC	2 cut(s)	40, 222
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	141, 171
NmuCI	GTSAC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	93, 123
PkrI	GCNGC	2 cut(s)	48, 245
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	141, 171
PspPI	GGNCC	3 cut(s)	139, 170, 235
SatI	GCNGC	2 cut(s)	47, 244
Sau3AI	GATC	2 cut(s)	40, 222
Sau96I	GGNCC	3 cut(s)	139, 170, 235
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	3 cut(s)	167, 168, 174
SetI	ASST	5 cut(s)	51, 84, 91, 134, 159
SinI	GGWCC	1 cut(s)	139
SmaI	CCCGGG	1 cut(s)	168
SsiI	CCGC	3 cut(s)	74, 144, 244
StyD4I	CCNGG	3 cut(s)	165, 166, 172
TaqI	TCGA	1 cut(s)	91
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	2 cut(s)	93, 123
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	178
TspMI	CCCGGG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	139
XmaI	CCCGGG	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.