Prupe.5G106600_v2.0.a1

Meiotic recombination protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
11258482 .. 11261245
2764 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G106600.1

Sequence Viewer

Length: 1149 bp
ATGGAAGAAGCTTGCAAATCCTCGTTGAACTTCTTCTCCGATCAACGGCTCTGCTATGCCGACGTCCTCTCTCCTCTGGAGGTCATCGCCAGAATCCAAGTCGCCGTCCTCAACTTCCTCCGGATCTTGACTTCTCCAGCTCCTGCAATCTCCGACCTCCCTCTCGTCGCAAGAAAATCAAGCAACAGCCGACTCAGCCAAGGCCTGTGGACTCAAACTTCATGGATTTTCCTAACGAACGCTTTCTCCGCCAGGTCTCTCGCACGACCCAATGCTGCCAAAGCCTTCATCAGAGTGTGGAAGGTGATGGCGATGTGCTCCCAGATTTTGGGTCAAGAGAAGAAGGTCACGCAGAGGGAGCTTTTCTACAAGTTGCTCTGCGATTCACCGGATTATTTCTCGTCTCAATCGCAGGTCAATCGAACTGTCCAAGATGTGGTGGCATTGCTTCGCTGCAGCCGTTATAGTCTCGGAATCATGGCGTCTAGCAGAGGACTTGTAGCCGGCCGTTTGCTGTTGCAGGAGCCAAACCAAGGGGTTGTGGATTGTGCTGCCTGTGGATTTTCCGGGCATGGTATCTCTGGGGACTTGAGTTCCATTGATAATTTGATAATGAAGACGGATGCAAGGTACATCATTGTGGTGGAGAAGCATGCAATATTCCAGCGGTTGGTGGACGACCGTGTGTTCAACCAAATTCCTAGCATTATTATTACTGCCAAAGGGTACCCTGATATTGCCACAAGGCTTCTTCTTCACCGGATGAGCCGGGCATTTCCTGACTTGCCAATTTTAGCACTAGTTGACTGGAACCCAGCTGGGTTAGCTATTTTGTGCACCTTCAAGTTTGGAAGTATAGGGATGGGCCTGGAGGCTTACAGATACGCTTGCAATGTGAAGTGGTTGGGAGTGCGTGGGGATGACCTAGAGCTGATACCCGAACAAGCTTTAGTTCCATTGAAACCGAAGGACCTCCAAATTGCTAAAAGCTTGATCTCCTCGGAGATTTTGCAGGAGAATTACAGAGAAGAGTTGACATTAATGGTTGAAAGTGGTCAGAGAGCAGAAATTGAAGCTCTGTATTTTCATGGATATGATTACTTGGGGAAGTTCATTGCAAAGAAAATTGTGCAAGCCAATTACATCTAA

Protein Analysis

383

Amino Acids

42.68

Weight (kDa)

8.76

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
Acc36I ACCTGC 1 cut(s) 403
Acc65I GGTACC 1 cut(s) 726
AccB1I GGYRCC 1 cut(s) 726
AccB7I CCANNNNNTGG 3 cut(s) 328, 436, 670
AccIII TCCGGA 1 cut(s) 120
AciI CCGC 2 cut(s) 249, 667
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 696
AcyI GRCGYC 2 cut(s) 63, 482
AfaI GTAC 2 cut(s) 632, 728
AfiI CCNNNNNNNGG 5 cut(s) 45, 328, 436, 533, 670
AgsI TTSAA 6 cut(s) 28, 691, 844, 961, 1049, 1073
AhlI ACTAGT 1 cut(s) 799
AjnI CCWGG 2 cut(s) 251, 867
AloI GAACNNNNNNTCC 4 cut(s) 20, 52, 230, 262
AluBI AGCT 9 cut(s) 11, 140, 361, 818, 827, 931, 947, 990, 1076
AluI AGCT 9 cut(s) 11, 140, 361, 818, 827, 931, 947, 990, 1076
Alw21I GWGCWC 2 cut(s) 320, 839
Alw26I GTCTC 3 cut(s) 261, 408, 473
Alw44I GTGCAC 1 cut(s) 835
AlwI GGATC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 120
AoxI GGCC 3 cut(s) 202, 505, 865
ApaLI GTGCAC 1 cut(s) 835
ApeKI GCWGC 4 cut(s) 275, 453, 456, 551
ApoI RAATTY 1 cut(s) 696
AseI ATTAAT 1 cut(s) 1040
Asp700I GAANNNNTTC 2 cut(s) 32, 242
Asp718I GGTACC 1 cut(s) 726
AspS9I GGNCC 2 cut(s) 865, 970
AsuC2I CCSGG 2 cut(s) 568, 770
AsuHPI GGTGA 3 cut(s) 316, 378, 749
AvaII GGWCC 1 cut(s) 970
BaeGI GKGCMC 1 cut(s) 839
BanI GGYRCC 1 cut(s) 726
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 2 cut(s) 320, 839
BbvI GCAGC 4 cut(s) 262, 440, 468, 538
BccI CCATC 2 cut(s) 301, 856
BceAI ACGGC 4 cut(s) 62, 89, 444, 492
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 2 cut(s) 253, 869
BcnI CCSGG 2 cut(s) 568, 770
BcoDI GTCTC 3 cut(s) 261, 408, 473
BcuI ACTAGT 1 cut(s) 799
BfaI CTAG 4 cut(s) 486, 702, 800, 926
BfmI CTRYAG 1 cut(s) 454
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 4 cut(s) 276, 454, 457, 552
BlsI GCNGC 4 cut(s) 277, 455, 458, 553
Bme1390I CCNGG 4 cut(s) 253, 568, 770, 869
Bme18I GGWCC 1 cut(s) 970
BmgT120I GGNCC 2 cut(s) 865, 970
BmiI GGNNCC 3 cut(s) 525, 728, 812
BmrFI CCNGG 4 cut(s) 253, 568, 770, 869
BmsI GCATC 1 cut(s) 613
BpiI GAAGAC 1 cut(s) 623
BpmI CTGGAG 3 cut(s) 98, 120, 890
BpuEI CTTGAG 1 cut(s) 610
BpuMI CCSGG 2 cut(s) 568, 770
BsaHI GRCGYC 2 cut(s) 63, 482
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 3 cut(s) 199, 532, 999
BsaWI WCCGGW 3 cut(s) 120, 388, 759
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 230, 260
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 328, 436, 533, 670
Bse118I RCCGGY 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 812
Bse3DI GCAATG 3 cut(s) 443, 898, 1113
BseAI TCCGGA 1 cut(s) 120
BseBI CCWGG 2 cut(s) 253, 869
BseDI CCNNGG 3 cut(s) 199, 532, 999
BseGI GGATG 4 cut(s) 628, 768, 867, 925
BseLI CCNNNNNNNGG 5 cut(s) 45, 328, 436, 533, 670
BseMI GCAATG 3 cut(s) 443, 898, 1113
BseMII CTCAG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 812
BseRI GAGGAG 2 cut(s) 63, 988
BseSI GKGCMC 1 cut(s) 839
BseX3I CGGCCG 1 cut(s) 505
BseXI GCAGC 4 cut(s) 262, 440, 468, 538
BseYI CCCAGC 2 cut(s) 814, 818
Bsh1285I CGRYCG 2 cut(s) 508, 682
BshFI GGCC 3 cut(s) 204, 507, 867
BshNI GGYRCC 1 cut(s) 726
BsiEI CGRYCG 2 cut(s) 508, 682
BsiHKAI GWGCWC 2 cut(s) 320, 839
BsiSI CCGG 6 cut(s) 121, 389, 504, 567, 760, 769
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 5 cut(s) 45, 328, 436, 533, 670
BsmAI GTCTC 3 cut(s) 261, 408, 473
BsmBI CGTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 3 cut(s) 204, 507, 867
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 320, 839
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 3 cut(s) 40, 123, 993
BspACI CCGC 2 cut(s) 249, 667
BspANI GGCC 3 cut(s) 204, 507, 867
BspCNI CTCAG 1 cut(s) 207
BspEI TCCGGA 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 525, 728, 812
BspMAI CTGCAG 1 cut(s) 458
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 726
BspTNI GGTCTC 1 cut(s) 261
BsrDI GCAATG 3 cut(s) 443, 898, 1113
BsrFI RCCGGY 1 cut(s) 503
BsrI ACTGG 1 cut(s) 812
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 3 cut(s) 199, 532, 999
BssMI GATC 3 cut(s) 40, 123, 993
BssNI GRCGYC 2 cut(s) 63, 482
BssT1I CCWWGG 2 cut(s) 199, 532
Bst2UI CCWGG 2 cut(s) 253, 869
Bst4CI ACNGT 2 cut(s) 427, 683
Bst6I CTCTTC 1 cut(s) 1023
BstACI GRCGYC 2 cut(s) 63, 482
BstC8I GCNNGC 5 cut(s) 13, 505, 654, 889, 1134
BstDEI CTNAG 1 cut(s) 194
BstF5I GGATG 4 cut(s) 628, 768, 867, 925
BstKTI GATC 3 cut(s) 43, 126, 996
BstMAI GTCTC 3 cut(s) 261, 408, 473
BstMBI GATC 3 cut(s) 40, 123, 993
BstMCI CGRYCG 2 cut(s) 508, 682
BstMWI GCNNNNNNNGC 5 cut(s) 195, 248, 281, 358, 824
BstNI CCWGG 2 cut(s) 253, 869
BstNSI RCATGY 1 cut(s) 656
BstSCI CCNGG 4 cut(s) 251, 566, 768, 867
BstSFI CTRYAG 1 cut(s) 454
BstSLI GKGCMC 1 cut(s) 839
BstV1I GCAGC 4 cut(s) 262, 440, 468, 538
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZI CGGCCG 1 cut(s) 505
BsuRI GGCC 3 cut(s) 204, 507, 867
BtgZI GCGATG 2 cut(s) 70, 326
BtsCI GGATG 4 cut(s) 628, 768, 867, 925
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 5 cut(s) 13, 505, 654, 889, 1134
CaiI CAGNNNCTG 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 2 cut(s) 865, 970
CseI GACGC 1 cut(s) 471
Csp6I GTAC 2 cut(s) 631, 727
CspCI CAANNNNNGTGG 2 cut(s) 188, 223
CviAII CATG 5 cut(s) 222, 478, 572, 653, 1088
CviQI GTAC 2 cut(s) 631, 727
DdeI CTNAG 1 cut(s) 194
DpnI GATC 3 cut(s) 42, 125, 995
DpnII GATC 3 cut(s) 40, 123, 993
EaeI YGGCCR 1 cut(s) 505
EagI CGGCCG 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 1023
EarI CTCTTC 1 cut(s) 1023
EciI GGCGGA 1 cut(s) 238
EclXI CGGCCG 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 199, 532
Eco147I AGGCCT 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 970
Eco52I CGGCCG 1 cut(s) 505
EcoO109I RGGNCCY 1 cut(s) 970
EcoRII CCWGG 2 cut(s) 251, 867
EcoT14I CCWWGG 2 cut(s) 199, 532
ErhI CCWWGG 2 cut(s) 199, 532
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 5 cut(s) 225, 481, 575, 656, 1091
FaiI YATR 9 cut(s) 57, 223, 465, 479, 573, 654, 857, 1089, 1095
FaqI GGGAC 1 cut(s) 599
FatI CATG 5 cut(s) 221, 477, 571, 652, 1087
Fnu4HI GCNGC 4 cut(s) 276, 454, 457, 552
FokI GGATG 4 cut(s) 635, 775, 874, 932
Fsp4HI GCNGC 4 cut(s) 276, 454, 457, 552
FspBI CTAG 4 cut(s) 486, 702, 800, 926
GluI GCNGC 4 cut(s) 276, 454, 457, 552
GsaI CCCAGC 2 cut(s) 818, 822
GsuI CTGGAG 3 cut(s) 98, 120, 890
HaeIII GGCC 3 cut(s) 204, 507, 867
HapII CCGG 6 cut(s) 121, 389, 504, 567, 760, 769
HgaI GACGC 1 cut(s) 471
Hin1I GRCGYC 2 cut(s) 63, 482
Hin1II CATG 5 cut(s) 225, 481, 575, 656, 1091
HincII GTYRAC 2 cut(s) 805, 1035
HindII GTYRAC 2 cut(s) 805, 1035
HindIII AAGCTT 3 cut(s) 9, 945, 988
HinfI GANTC 5 cut(s) 93, 192, 211, 383, 474
HpaII CCGG 6 cut(s) 121, 389, 504, 567, 760, 769
HphI GGTGA 3 cut(s) 316, 378, 749
Hpy166II GTNNAC 5 cut(s) 210, 676, 805, 837, 1035
Hpy188I TCNGA 6 cut(s) 40, 154, 293, 473, 1003, 1059
Hpy188III TCNNGA 5 cut(s) 77, 121, 127, 335, 779
Hpy8I GTNNAC 5 cut(s) 210, 676, 805, 837, 1035
Hpy99I CGWCG 2 cut(s) 65, 170
HpyAV CCTTC 5 cut(s) 295, 295, 337, 850, 961
HpyCH4III ACNGT 2 cut(s) 427, 683
HpyCH4IV ACGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 5 cut(s) 195, 248, 281, 358, 824
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 2 cut(s) 63, 482
Hsp92II CATG 5 cut(s) 225, 481, 575, 656, 1091
Kpn2I TCCGGA 1 cut(s) 120
KpnI GGTACC 1 cut(s) 730
KroI GCCGGC 1 cut(s) 503
KroNI GCCGGC 1 cut(s) 505
Kzo9I GATC 3 cut(s) 40, 123, 993
LmnI GCTCC 4 cut(s) 145, 323, 358, 523
Lsp1109I GCAGC 4 cut(s) 262, 440, 468, 538
LweI GCATC 1 cut(s) 613
MaeI CTAG 4 cut(s) 486, 702, 800, 926
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 42, 125, 995
MboI GATC 3 cut(s) 40, 123, 993
MboII GAAGA 7 cut(s) 17, 25, 352, 628, 743, 746, 1040
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 320, 839
MluCI AATT 8 cut(s) 604, 696, 789, 978, 1018, 1068, 1125, 1138
MlyI GAGTC 2 cut(s) 186, 205
MmeI TCCRAC 1 cut(s) 177
MroI TCCGGA 1 cut(s) 120
MroNI GCCGGC 1 cut(s) 503
MroXI GAANNNNTTC 2 cut(s) 32, 242
MseI TTAA 1 cut(s) 1040
MslI CAYNNNNRTG 4 cut(s) 293, 638, 641, 1092
MspA1I CMGCKG 2 cut(s) 667, 818
MspI CCGG 6 cut(s) 121, 389, 504, 567, 760, 769
MspR9I CCNGG 4 cut(s) 253, 568, 770, 869
MvaI CCWGG 2 cut(s) 253, 869
MwoI GCNNNNNNNGC 5 cut(s) 195, 248, 281, 358, 824
NaeI GCCGGC 1 cut(s) 505
NciI CCSGG 2 cut(s) 568, 770
NdeII GATC 3 cut(s) 40, 123, 993
NgoMIV GCCGGC 1 cut(s) 503
NlaIII CATG 5 cut(s) 225, 481, 575, 656, 1091
NlaIV GGNNCC 3 cut(s) 525, 728, 812
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 656
PaeI GCATGC 1 cut(s) 656
PceI AGGCCT 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 457
PdiI GCCGGC 1 cut(s) 505
PdmI GAANNNNTTC 2 cut(s) 32, 242
PfeI GAWTC 3 cut(s) 93, 383, 474
PflMI CCANNNNNTGG 3 cut(s) 328, 436, 670
PkrI GCNGC 4 cut(s) 277, 455, 458, 553
PleI GAGTC 2 cut(s) 186, 205
PpsI GAGTC 2 cut(s) 186, 205
PpuMI RGGWCCY 1 cut(s) 970
PshBI ATTAAT 1 cut(s) 1040
Psp5II RGGWCCY 1 cut(s) 970
Psp6I CCWGG 2 cut(s) 251, 867
PspFI CCCAGC 2 cut(s) 814, 818
PspGI CCWGG 2 cut(s) 251, 867
PspN4I GGNNCC 3 cut(s) 525, 728, 812
PspPI GGNCC 2 cut(s) 865, 970
PspPPI RGGWCCY 1 cut(s) 970
PstI CTGCAG 1 cut(s) 458
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 2 cut(s) 632, 728
RsaNI GTAC 2 cut(s) 631, 727
RseI CAYNNNNRTG 4 cut(s) 293, 638, 641, 1092
SaqAI TTAA 1 cut(s) 1040
SatI GCNGC 4 cut(s) 276, 454, 457, 552
Sau3AI GATC 3 cut(s) 40, 123, 993
Sau96I GGNCC 2 cut(s) 865, 970
SchI GAGTC 2 cut(s) 186, 205
ScrFI CCNGG 4 cut(s) 253, 568, 770, 869
SduI GDGCHC 2 cut(s) 320, 839
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 1 cut(s) 454
SinI GGWCC 1 cut(s) 970
SmiMI CAYNNNNRTG 4 cut(s) 293, 638, 641, 1092
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
SpeI ACTAGT 1 cut(s) 799
SphI GCATGC 1 cut(s) 656
Sse9I AATT 8 cut(s) 604, 696, 789, 978, 1018, 1068, 1125, 1138
SseBI AGGCCT 1 cut(s) 204
SsiI CCGC 2 cut(s) 249, 667
SspI AATATT 1 cut(s) 660
SspMI CTAG 4 cut(s) 486, 702, 800, 926
StuI AGGCCT 1 cut(s) 204
StyD4I CCNGG 4 cut(s) 251, 566, 768, 867
StyI CCWWGG 2 cut(s) 199, 532
TaaI ACNGT 2 cut(s) 427, 683
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 421
TasI AATT 8 cut(s) 604, 696, 789, 978, 1018, 1068, 1125, 1138
TfiI GAWTC 3 cut(s) 93, 383, 474
Tru1I TTAA 1 cut(s) 1040
Tru9I TTAA 1 cut(s) 1040
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 4 cut(s) 275, 453, 456, 551
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 5 cut(s) 210, 277, 629, 1076, 1102
TspGWI ACGGA 1 cut(s) 635
Van91I CCANNNNNTGG 3 cut(s) 328, 436, 670
VneI GTGCAC 1 cut(s) 835
VpaK11BI GGWCC 1 cut(s) 970
VspI ATTAAT 1 cut(s) 1040
XapI RAATTY 1 cut(s) 696
XceI RCATGY 1 cut(s) 656
XmnI GAANNNNTTC 2 cut(s) 32, 242
XspI CTAG 4 cut(s) 486, 702, 800, 926
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.