Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040598.1

Orthogroup ID

OG0008447

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 432

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040598.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 295 bp

atggaggacgcctgcaaatcggcgctgaacttcttctccgatcagcagctctgctacgccgacatcctcaccccgccggaggttatagctcgaatccaagtcgccgtcctcaacttcctccgaatcctgacctcgccggaccccgcaatctccgacctccctctcgtcgctagaagctcaagcaatactcgactgagccggggcctggtgactcagacttcatggattttcctgacgcgctcgttctgcaccagatcgcttctgaggcccaatgccgtcaaggcctttatcagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008094 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061458 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

98

Amino Acids

10.96

Weight (kDa)

9.49

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63990 AT1G63990
fragaria_vesca	FvH4_5g03200 FvH4_5g03200 FvH4_5g03200 FvH4_5g03200 FvH4_5g03200
malus_domestica	MD14G1112000.v1.1
prunus_persica	Prupe.5G106600_v2.0.a1
pyrus_communis	pycom14g10670
rosa_chinensis	RchiOBHm_Chr7g0196581
rosa_multiflora	Rmu_co8280957.1_g000001 Rmu_sc0006080.1_g000002 Rmu_sc0040598.1_g000001 Rmu_sc0040599.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259190
rosa_rugosa	Rorug07G0034800 Rorug07G0034900
rosa_samantha	Rh7AG158900 Rh7BG160900 Rh7CG167300 Rh7DG160100
rosa_wichuraiana	Rw7G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	238
AciI	CCGC	2 cut(s)	74, 144
AcyI	GRCGYC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	79, 205
AjnI	CCWGG	1 cut(s)	204
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AluBI	AGCT	3 cut(s)	49, 89, 177
AluI	AGCT	3 cut(s)	49, 89, 177
AoxI	GGCC	3 cut(s)	202, 266, 282
ApeKI	GCWGC	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	25, 240
AspS9I	GGNCC	3 cut(s)	139, 202, 267
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	61, 220
AvaII	GGWCC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	58
BceAI	ACGGC	2 cut(s)	89, 260
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	26
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	200, 206
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	139, 202, 267
BmiI	GGNNCC	2 cut(s)	141, 203
BmrFI	CCNGG	2 cut(s)	200, 206
BpuEI	CTTGAG	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 205
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	79, 205
BseMII	CTCAG	3 cut(s)	185, 227, 254
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	3 cut(s)	204, 268, 284
BsiSI	CCGG	3 cut(s)	77, 137, 199
BslI	CCNNNNNNNGG	2 cut(s)	79, 205
BsnI	GGCC	3 cut(s)	204, 268, 284
Bsp143I	GATC	2 cut(s)	40, 254
BspACI	CCGC	2 cut(s)	74, 144
BspANI	GGCC	3 cut(s)	204, 268, 284
BspCNI	CTCAG	3 cut(s)	186, 226, 255
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	141, 203
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	2 cut(s)	40, 254
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	194, 213, 263
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 240
BstKTI	GATC	2 cut(s)	43, 257
BstMBI	GATC	2 cut(s)	40, 254
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 265, 281
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	198, 204
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	204, 268, 284
BtsCI	GGATG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	2 cut(s)	25, 240
Cfr13I	GGNCC	3 cut(s)	139, 202, 267
CseI	GACGC	2 cut(s)	17, 244
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	7 cut(s)	49, 89, 177, 198, 204, 268, 284
CviKI_1	RGCY	7 cut(s)	49, 89, 177, 198, 204, 268, 284
DdeI	CTNAG	3 cut(s)	194, 213, 263
DpnI	GATC	2 cut(s)	42, 256
DpnII	GATC	2 cut(s)	40, 254
Eco147I	AGGCCT	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	204
FaeI	CATG	1 cut(s)	225
FaiI	YATR	2 cut(s)	86, 223
FatI	CATG	1 cut(s)	221
FauI	CCCGC	2 cut(s)	81, 151
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	2 cut(s)	24, 239
GluI	GCNGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	3 cut(s)	204, 268, 284
HapII	CCGG	3 cut(s)	77, 137, 199
HgaI	GACGC	2 cut(s)	17, 244
HhaI	GCGC	2 cut(s)	25, 240
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	225
Hin6I	GCGC	2 cut(s)	23, 238
HinP1I	GCGC	2 cut(s)	23, 238
HinfI	GANTC	3 cut(s)	93, 123, 211
HpaII	CCGG	3 cut(s)	77, 137, 199
HphI	GGTGA	2 cut(s)	61, 220
Hpy188I	TCNGA	6 cut(s)	40, 122, 154, 216, 264, 293
Hpy188III	TCNNGA	2 cut(s)	127, 232
Hpy99I	CGWCG	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	15, 249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 265, 281
HpyF3I	CTNAG	3 cut(s)	194, 213, 263
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	225
HspAI	GCGC	2 cut(s)	23, 238
Kzo9I	GATC	2 cut(s)	40, 254
LpnPI	CCDG	9 cut(s)	25, 90, 140, 150, 191, 212, 218, 245, 265
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	42, 256
MboI	GATC	2 cut(s)	40, 254
MboII	GAAGA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	8 cut(s)	73, 77, 119, 128, 142, 167, 171, 258
MroXI	GAANNNNTTC	1 cut(s)	32
MspI	CCGG	3 cut(s)	77, 137, 199
MspR9I	CCNGG	2 cut(s)	200, 206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	246, 265, 281
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	40, 254
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	2 cut(s)	141, 203
NmuCI	GTSAC	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	93, 123
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	141, 203
PspPI	GGNCC	3 cut(s)	139, 202, 267
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	2 cut(s)	40, 254
Sau96I	GGNCC	3 cut(s)	139, 202, 267
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	200, 206
SetI	ASST	6 cut(s)	51, 84, 91, 134, 159, 179
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	2 cut(s)	74, 144
SspMI	CTAG	1 cut(s)	171
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	198, 204
TaqI	TCGA	2 cut(s)	91, 190
TfiI	GAWTC	2 cut(s)	93, 123
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.