Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008447

Physical Location & Seq

Genomic Coordinates Forward (+)

13950033 .. 13950872

Gene Structure 840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG167300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAGGACGCCTGCAAATCGGCGCTGAACTTCTTCTCCGATCAGCAGCTCTGCTACGCCGACATCCTCACCCCGCCGGAGGTTATAGCTCGAATCCAAGTCGCCGTCCTCAACTTCCTCCGAATCCTGACCTCGCCGGACCCTGCAATCTCCGACCTCCCTCTCGTCGCTAGAAGCTCAAGCAATAGTCGACTGAGCCGGGGCCTGGTGACTCAGACTTCATGGATTTTCCTGACGCGCTCGTTCTGCACCAGATCGCTTCTGAGGCCCAATGCCGCCGAAGCCTTTATCAGAGTGTGGAAGGTGATGGCGATGTGCTCTGAGATTTTGGGGCAAGGAAAGAGAGTCACGCAGCGGGAGCTCTTCTACAAGTTGCTTTGCGACTCGCCGGAGTATTTCTCGTCGCAATCGCAGGTCAATCGGACTATCCAAGATGTAGTGGCATTGCTTCGCTGCAGCCGTTACAGCCTCGGAATCATGGCCTCTAGCCGAGGACTTGTTGCCGGCCGTTTGCTGTTGCAGTTGGGTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008094 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061458 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

177

Amino Acids

19.77

Weight (kDa)

9.41

Isoelectric Point (pI)

59.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP6A_N	PF04406	95 - 159	1.2e-17	Type IIB DNA topoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63990 AT1G63990
fragaria_vesca	FvH4_5g03200 FvH4_5g03200 FvH4_5g03200 FvH4_5g03200 FvH4_5g03200
malus_domestica	MD14G1112000.v1.1
prunus_persica	Prupe.5G106600_v2.0.a1
pyrus_communis	pycom14g10670
rosa_chinensis	RchiOBHm_Chr7g0196581
rosa_multiflora	Rmu_co8280957.1_g000001 Rmu_sc0006080.1_g000002 Rmu_sc0040598.1_g000001 Rmu_sc0040599.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259190
rosa_rugosa	Rorug07G0034800 Rorug07G0034900
rosa_samantha	Rh7AG158900 Rh7BG160900 Rh7CG167300 Rh7DG160100
rosa_wichuraiana	Rw7G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	190
AccII	CGCG	1 cut(s)	238
AciI	CCGC	3 cut(s)	74, 276, 355
AcoI	YGGCCR	1 cut(s)	505
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	2 cut(s)	79, 205
AjnI	CCWGG	1 cut(s)	204
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AluBI	AGCT	4 cut(s)	49, 89, 177, 361
AluI	AGCT	4 cut(s)	49, 89, 177, 361
Alw21I	GWGCWC	2 cut(s)	320, 363
AoxI	GGCC	4 cut(s)	202, 266, 480, 505
ApeKI	GCWGC	4 cut(s)	46, 352, 453, 456
Asp700I	GAANNNNTTC	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	527
AspLEI	GCGC	2 cut(s)	25, 240
AspS9I	GGNCC	3 cut(s)	139, 202, 267
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	61, 220, 316
AvaII	GGWCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	2 cut(s)	320, 363
BbvI	GCAGC	4 cut(s)	58, 364, 440, 468
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	3 cut(s)	89, 444, 492
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	2 cut(s)	171, 486
BfmI	CTRYAG	1 cut(s)	454
BfoI	RGCGCY	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	5 cut(s)	47, 276, 353, 454, 457
BlsI	GCNGC	5 cut(s)	48, 277, 354, 455, 458
Bme1390I	CCNGG	2 cut(s)	200, 206
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	139, 202, 267
BmiI	GGNNCC	3 cut(s)	141, 203, 529
BmrFI	CCNGG	2 cut(s)	200, 206
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
BpuEI	CTTGAG	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	199, 469, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 205
Bse118I	RCCGGY	1 cut(s)	503
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	3 cut(s)	199, 469, 490
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	79, 205
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	4 cut(s)	185, 227, 254, 312
BseX3I	CGGCCG	1 cut(s)	505
BseXI	GCAGC	4 cut(s)	58, 364, 440, 468
BsgI	GTGCAG	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	238
Bsh1285I	CGRYCG	1 cut(s)	508
BshFI	GGCC	4 cut(s)	204, 268, 482, 507
BshNI	GGYRCC	1 cut(s)	527
BsiEI	CGRYCG	1 cut(s)	508
BsiHKAI	GWGCWC	2 cut(s)	320, 363
BsiSI	CCGG	5 cut(s)	77, 137, 199, 389, 504
BslI	CCNNNNNNNGG	2 cut(s)	79, 205
BsnI	GGCC	4 cut(s)	204, 268, 482, 507
Bsp1286I	GDGCHC	2 cut(s)	320, 363
Bsp143I	GATC	2 cut(s)	40, 254
BspACI	CCGC	3 cut(s)	74, 276, 355
BspANI	GGCC	4 cut(s)	204, 268, 482, 507
BspCNI	CTCAG	4 cut(s)	186, 226, 255, 313
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	141, 203, 529
BspMAI	CTGCAG	1 cut(s)	458
BspMI	ACCTGC	1 cut(s)	403
BspQI	GCTCTTC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	443
BsrFI	RCCGGY	1 cut(s)	503
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	3 cut(s)	199, 469, 490
BssMI	GATC	2 cut(s)	40, 254
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	13, 505
BstDEI	CTNAG	4 cut(s)	194, 213, 263, 321
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 240
BstKTI	GATC	2 cut(s)	43, 257
BstMBI	GATC	2 cut(s)	40, 254
BstMCI	CGRYCG	1 cut(s)	508
BstMWI	GCNNNNNNNGC	5 cut(s)	246, 265, 281, 358, 465
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	198, 204
BstSFI	CTRYAG	1 cut(s)	454
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	4 cut(s)	58, 364, 440, 468
BstZI	CGGCCG	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	204, 268, 482, 507
BtgZI	GCGATG	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	13, 505
CfoI	GCGC	2 cut(s)	25, 240
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	3 cut(s)	139, 202, 267
CseI	GACGC	2 cut(s)	17, 244
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	2 cut(s)	222, 478
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	4 cut(s)	194, 213, 263, 321
DpnI	GATC	2 cut(s)	42, 256
DpnII	GATC	2 cut(s)	40, 254
EaeI	YGGCCR	1 cut(s)	505
EagI	CGGCCG	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	361
EclXI	CGGCCG	1 cut(s)	505
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	139
Eco52I	CGGCCG	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	2 cut(s)	225, 481
FaiI	YATR	3 cut(s)	86, 223, 479
FatI	CATG	2 cut(s)	221, 477
FauI	CCCGC	2 cut(s)	81, 348
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	5 cut(s)	47, 276, 353, 454, 457
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	5 cut(s)	47, 276, 353, 454, 457
FspBI	CTAG	2 cut(s)	171, 486
GlaI	GCGC	2 cut(s)	24, 239
GluI	GCNGC	5 cut(s)	47, 276, 353, 454, 457
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	4 cut(s)	204, 268, 482, 507
HapII	CCGG	5 cut(s)	77, 137, 199, 389, 504
HgaI	GACGC	2 cut(s)	17, 244
HhaI	GCGC	2 cut(s)	25, 240
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	225, 481
Hin6I	GCGC	2 cut(s)	23, 238
HinP1I	GCGC	2 cut(s)	23, 238
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HinfI	GANTC	6 cut(s)	93, 123, 211, 345, 383, 474
HpaII	CCGG	5 cut(s)	77, 137, 199, 389, 504
HphI	GGTGA	3 cut(s)	61, 220, 316
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	9 cut(s)	40, 122, 154, 216, 264, 293, 322, 423, 473
Hpy188III	TCNNGA	2 cut(s)	127, 232
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	2 cut(s)	170, 406
HpyAV	CCTTC	1 cut(s)	295
HpyCH4V	TGCA	5 cut(s)	15, 146, 249, 456, 520
HpyF10VI	GCNNNNNNNGC	5 cut(s)	246, 265, 281, 358, 465
HpyF3I	CTNAG	4 cut(s)	194, 213, 263, 321
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	225, 481
HspAI	GCGC	2 cut(s)	23, 238
KpnI	GGTACC	1 cut(s)	531
KroI	GCCGGC	1 cut(s)	503
KroNI	GCCGGC	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	40, 254
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	4 cut(s)	58, 364, 440, 468
MaeI	CTAG	2 cut(s)	171, 486
MaeIII	GTNAC	3 cut(s)	208, 346, 461
MalI	GATC	2 cut(s)	42, 256
MboI	GATC	2 cut(s)	40, 254
MboII	GAAGA	2 cut(s)	25, 355
MhlI	GDGCHC	2 cut(s)	320, 363
MlyI	GAGTC	3 cut(s)	205, 354, 377
MmeI	TCCRAC	1 cut(s)	177
MroNI	GCCGGC	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	5 cut(s)	77, 137, 199, 389, 504
MspR9I	CCNGG	2 cut(s)	200, 206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	5 cut(s)	246, 265, 281, 358, 465
NaeI	GCCGGC	1 cut(s)	505
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	40, 254
NgoMIV	GCCGGC	1 cut(s)	503
NlaIII	CATG	2 cut(s)	225, 481
NlaIV	GGNNCC	3 cut(s)	141, 203, 529
NmeAIII	GCCGAG	1 cut(s)	515
NmuCI	GTSAC	2 cut(s)	208, 346
PciSI	GCTCTTC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	457
PdiI	GCCGGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	3 cut(s)	93, 123, 474
PkrI	GCNGC	5 cut(s)	48, 277, 354, 455, 458
PleI	GAGTC	3 cut(s)	205, 353, 377
PpsI	GAGTC	3 cut(s)	205, 353, 377
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	141, 203, 529
PspPI	GGNCC	3 cut(s)	139, 202, 267
PstI	CTGCAG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
SacI	GAGCTC	1 cut(s)	363
SalI	GTCGAC	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	368
SatI	GCNGC	5 cut(s)	47, 276, 353, 454, 457
Sau3AI	GATC	2 cut(s)	40, 254
Sau96I	GGNCC	3 cut(s)	139, 202, 267
SchI	GAGTC	3 cut(s)	205, 354, 377
ScrFI	CCNGG	2 cut(s)	200, 206
SduI	GDGCHC	2 cut(s)	320, 363
SfcI	CTRYAG	1 cut(s)	454
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
SsiI	CCGC	3 cut(s)	74, 276, 355
SspMI	CTAG	2 cut(s)	171, 486
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	198, 204
TaqI	TCGA	2 cut(s)	91, 190
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	3 cut(s)	93, 123, 474
TseFI	GTSAC	2 cut(s)	208, 346
TseI	GCWGC	4 cut(s)	46, 352, 453, 456
Tsp45I	GTSAC	2 cut(s)	208, 346
TspDTI	ATGAA	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	171, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.