Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8280957.1

Orthogroup ID

OG0008447

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 815

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8280957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 455 bp

tgtggaaggtgatggcgatgtgctctgagattttggggcaaggaaagagagtcacgcagcgggagctcttctacaagttgctttgcgactcgccggagtatttctcgtcgcaatcgcaggtcaatcggactatccaagatgtagtggcattgcttcgctgcagccgttacagcctcggaatcatggcctctggccgaggacttgttgccggccgtttgctgttgcaggagccaaaccaagaggttgtggactgtgctgcctgtggattttccgggcatgctatcactggtgacttgaattcgatagatacgttgatgatgaaaacagatgcgcggtacatcattgtagtcgaaaagcatgcaatataccagcggctggttgaggaccatgtgttcaaccaaattcccagcattcttatcactgccaaagggtacccagatattgccacgaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008094 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061458 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

150

Amino Acids

16.77

Weight (kDa)

7.81

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63990 AT1G63990
fragaria_vesca	FvH4_5g03200 FvH4_5g03200 FvH4_5g03200 FvH4_5g03200 FvH4_5g03200
malus_domestica	MD14G1112000.v1.1
prunus_persica	Prupe.5G106600_v2.0.a1
pyrus_communis	pycom14g10670
rosa_chinensis	RchiOBHm_Chr7g0196581
rosa_multiflora	Rmu_co8280957.1_g000001 Rmu_sc0006080.1_g000002 Rmu_sc0040598.1_g000001 Rmu_sc0040599.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259190
rosa_rugosa	Rorug07G0034800 Rorug07G0034900
rosa_samantha	Rh7AG158900 Rh7BG160900 Rh7CG167300 Rh7DG160100
rosa_wichuraiana	Rw7G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	108
Acc65I	GGTACC	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	431
AccB7I	CCANNNNNTGG	1 cut(s)	375
AccII	CGCG	1 cut(s)	333
AciI	CCGC	3 cut(s)	60, 333, 372
AcoI	YGGCCR	2 cut(s)	192, 210
AcsI	RAATTY	2 cut(s)	297, 401
AfaI	GTAC	2 cut(s)	337, 433
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	297, 396
AloI	GAACNNNNNNTCC	2 cut(s)	376, 408
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Alw21I	GWGCWC	2 cut(s)	25, 68
AlwNI	CAGNNNCTG	1 cut(s)	375
AoxI	GGCC	3 cut(s)	185, 192, 210
ApeKI	GCWGC	4 cut(s)	57, 158, 161, 256
ApoI	RAATTY	2 cut(s)	297, 401
Asp718I	GGTACC	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	384
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	21, 301
AvaII	GGWCC	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	447
Bbv12I	GWGCWC	2 cut(s)	25, 68
BbvI	GCAGC	4 cut(s)	69, 145, 173, 243
BccI	CCATC	1 cut(s)	6
BceAI	ACGGC	2 cut(s)	149, 197
BcgI	CGANNNNNNTGC	4 cut(s)	106, 140, 340, 374
BcnI	CCSGG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	108
BisI	GCNGC	5 cut(s)	58, 159, 162, 257, 373
BlsI	GCNGC	5 cut(s)	59, 160, 163, 258, 374
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	2 cut(s)	230, 433
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	318
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
BpuMI	CCSGG	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	174, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	174, 195
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	291
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	4 cut(s)	69, 145, 173, 243
BseYI	CCCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	187, 194, 212
BshNI	GGYRCC	1 cut(s)	431
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	2 cut(s)	25, 68
BsiSI	CCGG	3 cut(s)	94, 209, 272
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	3 cut(s)	187, 194, 212
Bsp1286I	GDGCHC	2 cut(s)	25, 68
BspACI	CCGC	3 cut(s)	60, 333, 372
BspANI	GGCC	3 cut(s)	187, 194, 212
BspCNI	CTCAG	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	230, 433
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	291
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	174, 195
BssSI	CACGAG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	73
BstC8I	GCNNGC	3 cut(s)	210, 278, 359
BstDEI	CTNAG	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	333
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 170
BstNSI	RCATGY	2 cut(s)	280, 361
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	4 cut(s)	69, 145, 173, 243
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	187, 194, 212
BtgZI	GCGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	284, 419
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	3 cut(s)	210, 278, 359
CaiI	CAGNNNCTG	1 cut(s)	375
CfoI	GCGC	1 cut(s)	333
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	336, 432
CviAII	CATG	4 cut(s)	183, 277, 358, 388
CviJI	RGCY	8 cut(s)	66, 164, 173, 187, 194, 212, 231, 375
CviKI_1	RGCY	8 cut(s)	66, 164, 173, 187, 194, 212, 231, 375
CviQI	GTAC	2 cut(s)	336, 432
DdeI	CTNAG	1 cut(s)	26
EaeI	YGGCCR	2 cut(s)	192, 210
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	66
EclXI	CGGCCG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	384
Eco52I	CGGCCG	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	4 cut(s)	186, 280, 361, 391
FaiI	YATR	5 cut(s)	184, 278, 359, 366, 389
FatI	CATG	4 cut(s)	182, 276, 357, 387
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	5 cut(s)	58, 159, 162, 257, 373
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	5 cut(s)	58, 159, 162, 257, 373
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	5 cut(s)	58, 159, 162, 257, 373
GsaI	CCCAGC	1 cut(s)	410
HaeIII	GGCC	3 cut(s)	187, 194, 212
HapII	CCGG	3 cut(s)	94, 209, 272
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	4 cut(s)	186, 280, 361, 391
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	3 cut(s)	50, 88, 179
HpaII	CCGG	3 cut(s)	94, 209, 272
HphI	GGTGA	2 cut(s)	21, 301
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	3 cut(s)	27, 128, 178
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	111
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	161, 225, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 170
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	4 cut(s)	186, 280, 361, 391
HspAI	GCGC	1 cut(s)	331
KpnI	GGTACC	1 cut(s)	435
KroI	GCCGGC	1 cut(s)	208
KroNI	GCCGGC	1 cut(s)	210
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	63, 228
Lsp1109I	GCAGC	4 cut(s)	69, 145, 173, 243
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	3 cut(s)	51, 166, 289
MboII	GAAGA	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	25, 68
MluCI	AATT	2 cut(s)	297, 401
MlyI	GAGTC	2 cut(s)	59, 82
MnlI	CCTC	6 cut(s)	184, 190, 198, 234, 375, 443
MroNI	GCCGGC	1 cut(s)	208
MspA1I	CMGCKG	2 cut(s)	60, 372
MspI	CCGG	3 cut(s)	94, 209, 272
MspR9I	CCNGG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	410
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	63, 170
NaeI	GCCGGC	1 cut(s)	210
NciI	CCSGG	1 cut(s)	273
NgoMIV	GCCGGC	1 cut(s)	208
NlaIII	CATG	4 cut(s)	186, 280, 361, 391
NlaIV	GGNNCC	2 cut(s)	230, 433
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	51, 289
NspI	RCATGY	2 cut(s)	280, 361
PaeI	GCATGC	2 cut(s)	280, 361
PciSI	GCTCTTC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 307
PctI	GAATGC	1 cut(s)	410
PdiI	GCCGGC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	375
PkrI	GCNGC	5 cut(s)	59, 160, 163, 258, 374
PleI	GAGTC	2 cut(s)	58, 82
PpsI	GAGTC	2 cut(s)	58, 82
Psp124BI	GAGCTC	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	230, 433
PspPI	GGNCC	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	375
RsaI	GTAC	2 cut(s)	337, 433
RsaNI	GTAC	2 cut(s)	336, 432
SacI	GAGCTC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	73
SatI	GCNGC	5 cut(s)	58, 159, 162, 257, 373
Sau96I	GGNCC	1 cut(s)	384
SchI	GAGTC	2 cut(s)	59, 82
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	2 cut(s)	25, 68
SetI	ASST	6 cut(s)	11, 68, 122, 245, 313, 454
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	384
SphI	GCATGC	2 cut(s)	280, 361
Sse9I	AATT	2 cut(s)	297, 401
SsiI	CCGC	3 cut(s)	60, 333, 372
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	301, 350
TasI	AATT	2 cut(s)	297, 401
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	179
TscAI	CASTG	2 cut(s)	291, 426
TseFI	GTSAC	2 cut(s)	51, 289
TseI	GCWGC	4 cut(s)	57, 158, 161, 256
Tsp45I	GTSAC	2 cut(s)	51, 289
TspDTI	ATGAA	1 cut(s)	334
TspRI	CASTG	2 cut(s)	291, 426
Van91I	CCANNNNNTGG	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	384
XapI	RAATTY	2 cut(s)	297, 401
XceI	RCATGY	2 cut(s)	280, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.