MD06G1092300.v1.1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014809
Physical Location & Seq
Forward (+)
22147995 .. 22149698
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1092300.v1.1.491

Sequence Viewer

Length: 279 bp
ATGACAGTTTGCGTCTTTTCAATTTTGCAGTTGAGGTGCTTGCTGGGTCGACATGCTACAAATCGATCATCTAAGAGAAGAAAAGTTGCATCGGATGTCTGGAGTTGCAAGAGCACTCAAAGTGGAGGAAAGTATTTTAAAGAAGCCAAAGGGTGCCTACTTTCATTGAAAAATTCGATTGAAAATCTACACCGAAAGGATCTCTTTCCTTACAATCCTAATGTTCTTCTGAACCGCTTAACGCGATTTCAGGAACTCTGTTTTGAGGAAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LINES_C LINES_N

Protein Analysis

93

Amino Acids

10.68

Weight (kDa)

9.92

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LINES_C PF14695 50 - 85 1.5e-14 Lines C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 49
AccII CGCG 1 cut(s) 244
AciI CCGC 1 cut(s) 235
AclWI GGATC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 172
AgsI TTSAA 3 cut(s) 21, 169, 182
Alw21I GWGCWC 1 cut(s) 116
AlwI GGATC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 172
BanI GGYRCC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 155
BmsI GCATC 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 121
Bsa29I ATCGAT 1 cut(s) 64
BseCI ATCGAT 1 cut(s) 64
BseGI GGATG 1 cut(s) 100
BseYI CCCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 244
BshNI GGYRCC 1 cut(s) 153
BshVI ATCGAT 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 65, 199
BspACI CCGC 1 cut(s) 235
BspDI ATCGAT 1 cut(s) 64
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 155
BspPI GGATC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 153
BssMI GATC 2 cut(s) 65, 199
Bst4CI ACNGT 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 244
BstKTI GATC 2 cut(s) 68, 202
BstMBI GATC 2 cut(s) 65, 199
BstNSI RCATGY 1 cut(s) 56
BstUI CGCG 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 64
BsuTUI ATCGAT 1 cut(s) 64
BtsCI GGATG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 41
ClaI ATCGAT 1 cut(s) 64
CviAII CATG 1 cut(s) 53
CviJI RGCY 1 cut(s) 146
CviKI_1 RGCY 1 cut(s) 146
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 67, 201
DpnII GATC 2 cut(s) 65, 199
DraI TTTAAA 1 cut(s) 139
FaeI CATG 1 cut(s) 56
FaiI YATR 1 cut(s) 54
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 1 cut(s) 52
FblI GTMKAC 1 cut(s) 49
FokI GGATG 1 cut(s) 107
GsaI CCCAGC 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 121
Hin1II CATG 1 cut(s) 56
HincII GTYRAC 1 cut(s) 50
HindII GTYRAC 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 2 cut(s) 94, 231
Hpy188III TCNNGA 2 cut(s) 100, 251
Hpy8I GTNNAC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 3 cut(s) 28, 89, 108
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 2 cut(s) 65, 199
LpnPI CCDG 3 cut(s) 29, 85, 236
LweI GCATC 1 cut(s) 98
MalI GATC 2 cut(s) 67, 201
MboI GATC 2 cut(s) 65, 199
MboII GAAGA 2 cut(s) 90, 218
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 2 cut(s) 21, 172
MnlI CCTC 3 cut(s) 27, 119, 259
MseI TTAA 2 cut(s) 138, 239
MvnI CGCG 1 cut(s) 244
NdeII GATC 2 cut(s) 65, 199
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 155
NspI RCATGY 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 155
PsuI RGATCY 1 cut(s) 199
SalI GTCGAC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 138, 239
Sau3AI GATC 2 cut(s) 65, 199
SduI GDGCHC 1 cut(s) 116
SetI ASST 1 cut(s) 38
SfaNI GCATC 1 cut(s) 98
SgeI CNNG 7 cut(s) 52, 56, 65, 112, 121, 255, 263
Sse9I AATT 2 cut(s) 21, 172
SsiI CCGC 1 cut(s) 235
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 3 cut(s) 49, 64, 176
TasI AATT 2 cut(s) 21, 172
Tru1I TTAA 2 cut(s) 138, 239
Tru9I TTAA 2 cut(s) 138, 239
TspDTI ATGAA 1 cut(s) 153
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.