Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002081.1

Orthogroup ID

OG0014809

Physical Location & Seq

Genomic Coordinates Forward (+)

56283 .. 58169

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002081.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgatgtggaaagataaggatgtgtatgtagggataagctcgtcgaattcgaatggcagttcctcgcagatttgtagtgtgtattcttggagttttaggatgagaaaggttccgaggatgcattctcttccggtgaatccgaggggttatttggatgatcagcatggtgaaaatcggggtctacataagaggatggcttgtccattgtcaattcttgttgggattatattcatgactgggtgtggagctctggtttcatttgtcatgctgtttttgtgggctataattgttaacaggcacacggttttccttgctgaagtgctcctagatgagtttctggtgaagcctaatcctacggatttcaggtatgagaagatcagtgtagttgtagaggaagatgcagatgcagatgaaagcgtccccgaccttgagcctaaacgcaccgtttcgtcatctctgaactctcaagactctcggttttcgaagctgaagcgtcgattcaaaatgtgcagcgattcaaatctgacgaagcttcaccgtctgatcgacgattctctccgtccgtacacagaaccagatgtcgtttcggtaacgaaagagagagatattctggtcagtctctctcaggttcttcggcaagtgaagctttggattggagaagttgattccgattctgataatggagtggtgactggattggattttgagaatgagtgtatgtgtctgagtaaaatcttaactcacttgattgttttgctaacagtggagagtcaatatgtgaagcatctggcctgcaatgttctagctgctgtctctgaatttgtggcggcttctgaagagcttttgcggcaatccattcctactctggagtttaatcaggaagattgtttggaaggctctccgtttctatccagtgtttatgccactggatatgaagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

313

Amino Acids

35.29

Weight (kDa)

5.18

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014809)

Species	Orthologous Gene IDs
malus_domestica	MD06G1092100.v1.1 MD06G1092300.v1.1
pyrus_communis	pycom10g15780
rosa_chinensis	RchiOBHm_Chr4g0423021
rosa_laevigata	RLG00000033203
rosa_multiflora	Rmu_sc0002081.1_g000012 Rmu_sc0006774.1_g000013
rosa_rugosa	Rorug07G0146600
rosa_samantha	Rh1CG097600 Rh2AG167000 Rh2BG383200 Rh2CG172700 Rh4BG253000 Rh5AG146500 Rh6AG348000 Rh6CG120600 Rh7DG247300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	181
AciI	CCGC	2 cut(s)	827, 847
AcsI	RAATTY	2 cut(s)	46, 818
AcuI	CTGAAG	3 cut(s)	336, 509, 855
AfaI	GTAC	1 cut(s)	566
AgsI	TTSAA	2 cut(s)	502, 519
AluBI	AGCT	7 cut(s)	39, 248, 487, 532, 646, 806, 841
AluI	AGCT	7 cut(s)	39, 248, 487, 532, 646, 806, 841
Alw21I	GWGCWC	2 cut(s)	250, 324
Alw26I	GTCTC	2 cut(s)	623, 817
AoxI	GGCC	1 cut(s)	789
ApeKI	GCWGC	2 cut(s)	510, 806
ApoI	RAATTY	2 cut(s)	46, 818
AsuHPI	GGTGA	5 cut(s)	145, 179, 352, 527, 700
AsuII	TTCGAA	2 cut(s)	50, 482
BanII	GRGCYC	1 cut(s)	250
Bbv12I	GWGCWC	2 cut(s)	250, 324
BbvI	GCAGC	2 cut(s)	522, 793
BccI	CCATC	1 cut(s)	187
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	623, 817
BfaI	CTAG	2 cut(s)	326, 803
BisI	GCNGC	4 cut(s)	511, 807, 828, 848
BlsI	GCNGC	4 cut(s)	512, 808, 829, 849
BmiI	GGNNCC	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	4 cut(s)	108, 388, 394, 793
BmuI	ACTGGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	887
Bpu14I	TTCGAA	2 cut(s)	50, 482
BpuEI	CTTGAG	2 cut(s)	449, 450
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	113, 140
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bse1I	ACTGG	4 cut(s)	241, 697, 912, 931
Bse3DI	GCAATG	1 cut(s)	802
Bse8I	GATNNNNATC	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	113, 140
BseGI	GGATG	5 cut(s)	25, 105, 123, 160, 198
BseJI	GATNNNNATC	1 cut(s)	519
BseMI	GCAATG	1 cut(s)	802
BseMII	CTCAG	2 cut(s)	638, 716
BseNI	ACTGG	4 cut(s)	241, 697, 912, 931
BseXI	GCAGC	2 cut(s)	522, 793
BsgI	GTGCAG	1 cut(s)	529
BshFI	GGCC	1 cut(s)	791
BsiHKAI	GWGCWC	2 cut(s)	250, 324
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	404
BsmAI	GTCTC	2 cut(s)	623, 817
BsmFI	GGGAC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	791
Bsp119I	TTCGAA	2 cut(s)	50, 482
Bsp1286I	GDGCHC	2 cut(s)	250, 324
Bsp143I	GATC	3 cut(s)	157, 375, 543
BspACI	CCGC	2 cut(s)	827, 847
BspANI	GGCC	1 cut(s)	791
BspCNI	CTCAG	2 cut(s)	637, 717
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	111
BspQI	GCTCTTC	1 cut(s)	831
BspT104I	TTCGAA	2 cut(s)	50, 482
BsrDI	GCAATG	1 cut(s)	802
BsrI	ACTGG	4 cut(s)	241, 697, 912, 931
BssECI	CCNNGG	2 cut(s)	113, 140
BssMI	GATC	3 cut(s)	157, 375, 543
Bst4CI	ACNGT	4 cut(s)	304, 445, 539, 763
Bst6I	CTCTTC	2 cut(s)	132, 831
BstBI	TTCGAA	2 cut(s)	50, 482
BstC8I	GCNNGC	1 cut(s)	793
BstDEI	CTNAG	2 cut(s)	624, 725
BstF5I	GGATG	5 cut(s)	25, 105, 123, 160, 198
BstKTI	GATC	3 cut(s)	160, 378, 546
BstMAI	GTCTC	2 cut(s)	623, 817
BstMBI	GATC	3 cut(s)	157, 375, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	643, 847
BstV1I	GCAGC	2 cut(s)	522, 793
BsuRI	GGCC	1 cut(s)	791
BtsCI	GGATG	5 cut(s)	25, 105, 123, 160, 198
BtsIMutI	CAGTG	4 cut(s)	385, 768, 919, 924
Cac8I	GCNNGC	1 cut(s)	793
CciI	TCATGA	1 cut(s)	231
CseI	GACGC	2 cut(s)	406, 482
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	3 cut(s)	164, 232, 265
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	2 cut(s)	624, 725
DpnI	GATC	3 cut(s)	159, 377, 545
DpnII	GATC	3 cut(s)	157, 375, 543
Eam1104I	CTCTTC	2 cut(s)	132, 831
EarI	CTCTTC	2 cut(s)	132, 831
Ecl136II	GAGCTC	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	248
Eco57I	CTGAAG	3 cut(s)	336, 509, 855
EcoICRI	GAGCTC	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	250
FaeI	CATG	3 cut(s)	167, 235, 268
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	3 cut(s)	163, 231, 264
FbaI	TGATCA	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	511, 807, 828, 848
FokI	GGATG	5 cut(s)	32, 112, 130, 167, 205
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	4 cut(s)	511, 807, 828, 848
FspBI	CTAG	2 cut(s)	326, 803
GluI	GCNGC	4 cut(s)	511, 807, 828, 848
GsuI	CTGGAG	1 cut(s)	887
HaeIII	GGCC	1 cut(s)	791
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	2 cut(s)	406, 482
Hin1II	CATG	3 cut(s)	167, 235, 268
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	2 cut(s)	530, 644
HinfI	GANTC	8 cut(s)	136, 470, 498, 515, 551, 665, 671, 769
HpaI	GTTAAC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	5 cut(s)	145, 179, 352, 527, 700
Hpy166II	GTNNAC	3 cut(s)	182, 292, 567
Hpy188III	TCNNGA	4 cut(s)	232, 467, 866, 878
Hpy8I	GTNNAC	3 cut(s)	182, 292, 567
Hpy99I	CGWCG	3 cut(s)	46, 498, 551
HpyAV	CCTTC	1 cut(s)	887
HpyCH4III	ACNGT	4 cut(s)	304, 445, 539, 763
HpyCH4V	TGCA	5 cut(s)	121, 401, 407, 510, 795
HpyF10VI	GCNNNNNNNGC	2 cut(s)	643, 847
HpyF3I	CTNAG	2 cut(s)	624, 725
Hsp92II	CATG	3 cut(s)	167, 235, 268
Ksp22I	TGATCA	1 cut(s)	157
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	157, 375, 543
LguI	GCTCTTC	1 cut(s)	831
LmnI	GCTCC	2 cut(s)	245, 327
Lsp1109I	GCAGC	2 cut(s)	522, 793
LweI	GCATC	4 cut(s)	108, 388, 394, 793
MaeI	CTAG	2 cut(s)	326, 803
MaeIII	GTNAC	2 cut(s)	589, 688
MalI	GATC	3 cut(s)	159, 377, 545
MboI	GATC	3 cut(s)	157, 375, 543
MboII	GAAGA	6 cut(s)	119, 385, 407, 623, 848, 893
MhlI	GDGCHC	2 cut(s)	250, 324
MluCI	AATT	4 cut(s)	46, 210, 285, 818
MlyI	GAGTC	2 cut(s)	464, 778
MnlI	CCTC	5 cut(s)	73, 108, 135, 183, 385
Mph1103I	ATGCAT	1 cut(s)	123
MseI	TTAA	4 cut(s)	291, 737, 873, 940
MspI	CCGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	643, 847
NdeII	GATC	3 cut(s)	157, 375, 543
NlaIII	CATG	3 cut(s)	167, 235, 268
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	688
NsiI	ATGCAT	1 cut(s)	123
NspV	TTCGAA	2 cut(s)	50, 482
PagI	TCATGA	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	831
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	6 cut(s)	136, 498, 515, 551, 665, 671
PkrI	GCNGC	4 cut(s)	512, 808, 829, 849
PleI	GAGTC	2 cut(s)	464, 777
PpsI	GAGTC	2 cut(s)	464, 777
Psp124BI	GAGCTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	111
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
SacI	GAGCTC	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	831
SaqAI	TTAA	4 cut(s)	291, 737, 873, 940
SatI	GCNGC	4 cut(s)	511, 807, 828, 848
Sau3AI	GATC	3 cut(s)	157, 375, 543
SchI	GAGTC	2 cut(s)	464, 778
SduI	GDGCHC	2 cut(s)	250, 324
SfaNI	GCATC	4 cut(s)	108, 388, 394, 793
SfuI	TTCGAA	2 cut(s)	50, 482
SmlI	CTYRAG	2 cut(s)	428, 465
SmoI	CTYRAG	2 cut(s)	428, 465
Sse9I	AATT	4 cut(s)	46, 210, 285, 818
SsiI	CCGC	2 cut(s)	827, 847
SspMI	CTAG	2 cut(s)	326, 803
SstI	GAGCTC	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	304, 445, 539, 763
TaqI	TCGA	5 cut(s)	44, 50, 482, 496, 546
TasI	AATT	4 cut(s)	46, 210, 285, 818
TauI	GCSGC	2 cut(s)	830, 850
TfiI	GAWTC	6 cut(s)	136, 498, 515, 551, 665, 671
Tru1I	TTAA	4 cut(s)	291, 737, 873, 940
Tru9I	TTAA	4 cut(s)	291, 737, 873, 940
TscAI	CASTG	4 cut(s)	385, 768, 919, 931
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	2 cut(s)	510, 806
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	3 cut(s)	220, 246, 426
TspGWI	ACGGA	4 cut(s)	371, 548, 552, 891
TspRI	CASTG	4 cut(s)	385, 768, 919, 931
XapI	RAATTY	2 cut(s)	46, 818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmiI	GTMKAC	1 cut(s)	181
XspI	CTAG	2 cut(s)	326, 803
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.