Rh2AG167000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014809
Physical Location & Seq
Forward (+)
15681726 .. 15682386
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG167000.1

Sequence Viewer

Length: 438 bp
ATGTGCAGCGATTCAAATCTGACGAAGCTACACCGTCTGATCGACGATTCTCTCCGTCCGTACACAGAACCAGATGTCGTTTCGGTAACGAAAGAGAGAGAAATTCTTGTCAGTCTCTCTCAGGTTCTTCGGCAAGTGAAGCTTTGGATTGGAGAAGTTGATTCCGATTCTGATAATGGAGTGGTGACTGGATTGGATTTTGAGAATGAGTGTATGTGTCTGAGTAAAATCTTAACTCACTTGATTGTTTTGCTAACAGTGGAGAGTCAATATGTGAAGCATCTGGCCTGCAATGTTCTAGCTGCTGTCTCCGAATTTGTGGTGGCTTCTGAAGAGCTTTTGCGGCAATCCATTCCTACTCTGGAGTTTAATCAGGAAGATTGTTTGGAAGGCTCTCCGTTTCTATCCAGTGTTTATGCCACTGGATATGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LINES_C LINES_N

Protein Analysis

145

Amino Acids

16.2

Weight (kDa)

4.4

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 343
AcsI RAATTY 2 cut(s) 102, 314
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 1 cut(s) 62
AgsI TTSAA 1 cut(s) 15
AluBI AGCT 4 cut(s) 28, 142, 302, 337
AluI AGCT 4 cut(s) 28, 142, 302, 337
Alw26I GTCTC 2 cut(s) 119, 313
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 2 cut(s) 6, 302
ApoI RAATTY 2 cut(s) 102, 314
AsuHPI GGTGA 1 cut(s) 196
BbvI GCAGC 2 cut(s) 18, 289
BcoDI GTCTC 2 cut(s) 119, 313
BfaI CTAG 1 cut(s) 299
BisI GCNGC 3 cut(s) 7, 303, 344
BlsI GCNGC 3 cut(s) 8, 304, 345
BmsI GCATC 1 cut(s) 289
BpmI CTGGAG 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 15
Bse1I ACTGG 3 cut(s) 193, 408, 427
Bse3DI GCAATG 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 15
BseJI GATNNNNATC 1 cut(s) 15
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 2 cut(s) 134, 212
BseNI ACTGG 3 cut(s) 193, 408, 427
BseXI GCAGC 2 cut(s) 18, 289
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 287
BsmAI GTCTC 2 cut(s) 119, 313
BsnI GGCC 1 cut(s) 287
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 1 cut(s) 343
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 2 cut(s) 133, 213
BspQI GCTCTTC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 3 cut(s) 193, 408, 427
BssMI GATC 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 35, 259
Bst6I CTCTTC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 120, 221
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 2 cut(s) 119, 313
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 139, 343
BstV1I GCAGC 2 cut(s) 18, 289
BsuRI GGCC 1 cut(s) 287
BtsIMutI CAGTG 3 cut(s) 264, 415, 420
Cac8I GCNNGC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 61
CviJI RGCY 7 cut(s) 28, 142, 287, 302, 326, 337, 393
CviKI_1 RGCY 7 cut(s) 28, 142, 287, 302, 326, 337, 393
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 2 cut(s) 120, 221
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 351
FaiI YATR 4 cut(s) 215, 273, 417, 429
FalI AAGNNNNNCTT 2 cut(s) 126, 158
Fnu4HI GCNGC 3 cut(s) 7, 303, 344
Fsp4HI GCNGC 3 cut(s) 7, 303, 344
FspBI CTAG 1 cut(s) 299
GluI GCNGC 3 cut(s) 7, 303, 344
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 1 cut(s) 287
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 5 cut(s) 11, 47, 161, 167, 265
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 7 cut(s) 21, 39, 166, 172, 222, 313, 331
Hpy188III TCNNGA 2 cut(s) 362, 374
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 2 cut(s) 35, 259
HpyCH4V TGCA 2 cut(s) 6, 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 343
HpyF3I CTNAG 2 cut(s) 120, 221
Kzo9I GATC 1 cut(s) 39
LguI GCTCTTC 1 cut(s) 327
LpnPI CCDG 9 cut(s) 84, 107, 174, 269, 301, 347, 359, 408, 421
Lsp1109I GCAGC 2 cut(s) 18, 289
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 299
MaeIII GTNAC 2 cut(s) 85, 184
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 119, 344, 389
MluCI AATT 2 cut(s) 102, 314
MlyI GAGTC 1 cut(s) 274
MseI TTAA 3 cut(s) 233, 369, 436
MwoI GCNNNNNNNGC 2 cut(s) 139, 343
NdeII GATC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 327
PfeI GAWTC 4 cut(s) 11, 47, 161, 167
PkrI GCNGC 3 cut(s) 8, 304, 345
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 3 cut(s) 233, 369, 436
SatI GCNGC 3 cut(s) 7, 303, 344
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 1 cut(s) 274
SetI ASST 5 cut(s) 30, 126, 144, 304, 339
SfaNI GCATC 1 cut(s) 289
Sse9I AATT 2 cut(s) 102, 314
SsiI CCGC 1 cut(s) 343
SspMI CTAG 1 cut(s) 299
TaaI ACNGT 2 cut(s) 35, 259
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 102, 314
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 4 cut(s) 11, 47, 161, 167
Tru1I TTAA 3 cut(s) 233, 369, 436
Tru9I TTAA 3 cut(s) 233, 369, 436
TscAI CASTG 3 cut(s) 264, 415, 427
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 6, 302
Tsp45I GTSAC 1 cut(s) 184
TspGWI ACGGA 3 cut(s) 44, 48, 387
TspRI CASTG 3 cut(s) 264, 415, 427
XapI RAATTY 2 cut(s) 102, 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.