Rh7DG247300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014809
Physical Location & Seq
Forward (+)
25501173 .. 25501950
778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG247300.1

Sequence Viewer

Length: 360 bp
ATGTCCAGCGATTCAAATATGTCGATGCTTCACCGTCTGATCGACGATTCTCTCTGTCCTTACCCAGAACCAGATGTTGTTTGGGTGACCAAAGAGAGAGAAATTTGGGTCGGTCTCTCTCAGGTACTTCGATTTGAGCGTGAGGTCCAATTGATGAAAAATCTCTTGGAAGGCTATAGGAAAGCTTTAAAGGCAACACAAAAGACATTTGCTGAACATAGAGCACATTGTCCACAGGCTGTTGAGCCACTCTGCAGGGATAGATGTTTCGGGATCGGGGGGCCTTGTTTTAAGCACCACAAAACTGGAAAAGCTACGCCTAAAGCAAGAAGAAGAAGAGAGGATGAACAAGACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.92

Weight (kDa)

8.9

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 102
AfaI GTAC 1 cut(s) 126
AgsI TTSAA 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 2 cut(s) 185, 314
AluI AGCT 2 cut(s) 185, 314
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 281
AoxI GGCC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 145, 281
AsuHPI GGTGA 2 cut(s) 23, 97
AvaII GGWCC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 119
BfmI CTRYAG 2 cut(s) 175, 253
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 145, 281
BmiI GGNNCC 1 cut(s) 282
BmsI GCATC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 310, 359
BseGI GGATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 310, 359
BshFI GGCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 1 cut(s) 283
Bso31I GGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 39, 273
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 282
BspMAI CTGCAG 1 cut(s) 257
BspPI GGATC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 119
BsrI ACTGG 2 cut(s) 310, 359
BssMI GATC 2 cut(s) 39, 273
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 120
BstEII GGTNACC 1 cut(s) 85
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 2 cut(s) 42, 276
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 39, 273
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstPI GGTNACC 1 cut(s) 85
BstSFI CTRYAG 2 cut(s) 175, 253
BstXI CCANNNNNNTGG 1 cut(s) 305
BsuRI GGCC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 145, 281
Csp6I GTAC 1 cut(s) 125
CviJI RGCY 6 cut(s) 174, 185, 239, 247, 283, 314
CviKI_1 RGCY 6 cut(s) 174, 185, 239, 247, 283, 314
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 120
DpnI GATC 2 cut(s) 41, 275
DpnII GATC 2 cut(s) 39, 273
DraI TTTAAA 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 145
Eco91I GGTNACC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 85
FaiI YATR 3 cut(s) 20, 177, 219
FokI GGATG 1 cut(s) 356
HaeIII GGCC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 2 cut(s) 11, 47
HphI GGTGA 2 cut(s) 23, 97
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 120
Kzo9I GATC 2 cut(s) 39, 273
LpnPI CCDG 8 cut(s) 19, 78, 84, 107, 221, 241, 291, 340
LweI GCATC 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 41, 275
MboI GATC 2 cut(s) 39, 273
MboII GAAGA 3 cut(s) 342, 345, 348
MfeI CAATTG 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 2 cut(s) 102, 149
MnlI CCTC 2 cut(s) 136, 334
MseI TTAA 2 cut(s) 188, 291
MunI CAATTG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 39, 273
NlaIV GGNNCC 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 136
PfeI GAWTC 2 cut(s) 11, 47
PspEI GGTNACC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 2 cut(s) 145, 281
PstI CTGCAG 1 cut(s) 257
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 188, 291
Sau3AI GATC 2 cut(s) 39, 273
Sau96I GGNCC 2 cut(s) 145, 281
SduI GDGCHC 1 cut(s) 226
SetI ASST 4 cut(s) 126, 147, 187, 316
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 2 cut(s) 175, 253
SinI GGWCC 1 cut(s) 145
Sse9I AATT 2 cut(s) 102, 149
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 3 cut(s) 23, 42, 130
TaqII GACCGA 1 cut(s) 101
TasI AATT 2 cut(s) 102, 149
TfiI GAWTC 2 cut(s) 11, 47
Tru1I TTAA 2 cut(s) 188, 291
Tru9I TTAA 2 cut(s) 188, 291
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 170, 360
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 102
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.