Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0014809

Physical Location & Seq

Genomic Coordinates Reverse (-)

11552952 .. 11557243

Gene Structure 4292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0146600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCATGGCCGGCCATCGCAGAACCGGCTATCGTCTTTTCAGTCGAGAATTTCAGCTCTCCTCCTCGCCATGCTCTCCACCATGGCCGTAATTTACGTCGCCGGCCGTCTGTGGCAGGATGCTGAAGATAGGGTTTATTTGATCAAGGAAATTGATAAAAGAAATAGTCAGGGCCACTCTGCTATATCTGTGGACGATACGCTTAAGATTATAGCTTGCAGGGAGCAACAGAAGAAGTTGTCCGCCGTAGAGATGGAACTGGCTGCAGCAAGGAAAGAAGGCTTTGTTCCAAAGAGCTCGTCGAAAAATGAGAAGGATGATTCTAAGAAGAAGCTTCTAGCAGTTGTAGGAATTTTCACGACGTTTGGTCGCAATAAAAATAGGGAGGCAATTCGTAAGGCGTGGATGCCTACTGGTGCAGGATTGAAAAAATTGGCAGATGAAAAGGGCATTGTTGTGCGATTTGTAATTGGAAGAAGCCCAAATCGTGGAGACAGTTTGGACAAGCAAATCGACAGTGAAAGTAGGCAGACCAAAGACTTCATTGTTCTTGATGGTCAAGTAGAGGCATATGAGGAGGGTCCAAAAAAGATGAAATCATTCTTTATTCATGCTGTAGAGAGCTGGGATGCTGAGTTTTATGTCAAGGTCAATGATGATGCTTTTATTAATATTGATGTCCTTGGAGCAACACTAACTACTTATTTGAATAAGCCTCGTGTCTACATTGGGTGCATGAAATCAGGCGAAGTTTTCTCTGAACCGACACACAAATGGTACGAACCAGACTGGTGGAAATTTGGCGACGCAAAATCATACCCTAGACATGCATCTGGTGAAATGTATGCCATTTCTAGAGCATTAGCTCAGTTTATATCAATAAATAGGTCTATTCTTCGTACATATGCTCATGATGATGTTAGTGCTGGATCATGGTTTATTGGGCTTGATGTGAAGCACATTGATGATCGAAAGTTTTGCTGCAACTCCTGGTCTCCAGGAGCAATCTGTACAGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LINES_C LINES_N

Protein Analysis

340

Amino Acids

38.35

Weight (kDa)

9.08

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	15 - 92	6.3e-09	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	127 - 323	2.4e-37	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014809)

Species	Orthologous Gene IDs
malus_domestica	MD06G1092100.v1.1 MD06G1092300.v1.1
pyrus_communis	pycom10g15780
rosa_chinensis	RchiOBHm_Chr4g0423021
rosa_laevigata	RLG00000033203
rosa_multiflora	Rmu_sc0002081.1_g000012 Rmu_sc0006774.1_g000013
rosa_rugosa	Rorug07G0146600
rosa_samantha	Rh1CG097600 Rh2AG167000 Rh2BG383200 Rh2CG172700 Rh4BG253000 Rh5AG146500 Rh6AG348000 Rh6CG120600 Rh7DG247300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	723
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	937
AcoI	YGGCCR	4 cut(s)	7, 11, 84, 103
AcsI	RAATTY	3 cut(s)	48, 351, 797
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	3 cut(s)	779, 901, 1012
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	427, 709
AhdI	GACNNNNNGTC	1 cut(s)	366
AjnI	CCWGG	2 cut(s)	989, 997
AluBI	AGCT	7 cut(s)	56, 215, 297, 334, 624, 866, 1016
AluI	AGCT	7 cut(s)	56, 215, 297, 334, 624, 866, 1016
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	2 cut(s)	486, 999
AlwI	GGATC	1 cut(s)	937
AoxI	GGCC	5 cut(s)	7, 11, 84, 103, 172
ApeKI	GCWGC	3 cut(s)	263, 266, 981
ApoI	RAATTY	3 cut(s)	48, 351, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	172, 581
AsuHPI	GGTGA	1 cut(s)	848
AvaII	GGWCC	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	299
BauI	CACGAG	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	3 cut(s)	250, 278, 968
BccI	CCATC	3 cut(s)	22, 247, 548
BceAI	ACGGC	3 cut(s)	71, 90, 230
BcgI	CGANNNNNNTGC	2 cut(s)	960, 994
BciT130I	CCWGG	2 cut(s)	991, 999
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	486, 999
BfaI	CTAG	3 cut(s)	338, 822, 855
BfmI	CTRYAG	2 cut(s)	264, 615
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	3 cut(s)	264, 267, 982
BlsI	GCNGC	3 cut(s)	265, 268, 983
Bme1390I	CCNGG	2 cut(s)	991, 999
Bme18I	GGWCC	1 cut(s)	581
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	172, 581
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	991, 999
BmsI	GCATC	5 cut(s)	109, 396, 619, 649, 839
BpmI	CTGGAG	1 cut(s)	981
BsaI	GGTCTC	1 cut(s)	999
BsaJI	CCNNGG	2 cut(s)	81, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse118I	RCCGGY	3 cut(s)	9, 24, 101
Bse1I	ACTGG	3 cut(s)	264, 418, 794
BseBI	CCWGG	2 cut(s)	991, 999
BseDI	CCNNGG	2 cut(s)	81, 682
BseGI	GGATG	4 cut(s)	124, 322, 411, 634
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMII	CTCAG	2 cut(s)	624, 881
BseNI	ACTGG	3 cut(s)	264, 418, 794
BseRI	GAGGAG	3 cut(s)	50, 53, 590
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	250, 278, 968
BseYI	CCCAGC	1 cut(s)	624
BsgI	GTGCAG	1 cut(s)	438
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	5 cut(s)	9, 13, 86, 105, 174
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	10, 25, 102
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	2 cut(s)	486, 999
BsnI	GGCC	5 cut(s)	9, 13, 86, 105, 174
Bso31I	GGTCTC	1 cut(s)	999
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp1407I	TGTACA	1 cut(s)	1010
Bsp143I	GATC	3 cut(s)	141, 929, 967
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	5 cut(s)	9, 13, 86, 105, 174
BspCNI	CTCAG	2 cut(s)	625, 880
BspHI	TCATGA	1 cut(s)	910
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	937
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	999
BsrFI	RCCGGY	3 cut(s)	9, 24, 101
BsrGI	TGTACA	1 cut(s)	1010
BsrI	ACTGG	3 cut(s)	264, 418, 794
BssAI	RCCGGY	3 cut(s)	9, 24, 101
BssECI	CCNNGG	2 cut(s)	81, 682
BssMI	GATC	3 cut(s)	141, 929, 967
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	2 cut(s)	81, 682
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	991, 999
Bst4CI	ACNGT	2 cut(s)	497, 518
BstAFI	CTTAAG	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	1010
BstC8I	GCNNGC	3 cut(s)	11, 103, 217
BstDEI	CTNAG	3 cut(s)	324, 633, 867
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	4 cut(s)	124, 322, 411, 634
BstKTI	GATC	3 cut(s)	144, 932, 970
BstMAI	GTCTC	2 cut(s)	486, 999
BstMBI	GATC	3 cut(s)	141, 929, 967
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 25
BstNI	CCWGG	2 cut(s)	991, 999
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	2 cut(s)	989, 997
BstSFI	CTRYAG	2 cut(s)	264, 615
BstV1I	GCAGC	3 cut(s)	250, 278, 968
BstXI	CCANNNNNNTGG	1 cut(s)	792
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	5 cut(s)	9, 13, 86, 105, 174
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	4 cut(s)	124, 322, 411, 634
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	3 cut(s)	11, 103, 217
CciI	TCATGA	1 cut(s)	910
Cfr10I	RCCGGY	3 cut(s)	9, 24, 101
Cfr13I	GGNCC	2 cut(s)	172, 581
CseI	GACGC	1 cut(s)	815
Csp6I	GTAC	3 cut(s)	778, 900, 1011
CviAII	CATG	8 cut(s)	5, 70, 82, 611, 736, 827, 911, 933
CviQI	GTAC	3 cut(s)	778, 900, 1011
DdeI	CTNAG	3 cut(s)	324, 633, 867
DpnI	GATC	3 cut(s)	143, 931, 969
DpnII	GATC	3 cut(s)	141, 929, 967
DriI	GACNNNNNGTC	1 cut(s)	366
EaeI	YGGCCR	4 cut(s)	7, 11, 84, 103
EagI	CGGCCG	1 cut(s)	103
Eam1105I	GACNNNNNGTC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	297
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	81, 682
Eco24I	GRGCYC	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	999
Eco47I	GGWCC	1 cut(s)	581
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	989, 997
EcoT14I	CCWWGG	2 cut(s)	81, 682
EcoT22I	ATGCAT	2 cut(s)	6, 832
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	2 cut(s)	81, 682
FaeI	CATG	8 cut(s)	8, 73, 85, 614, 739, 830, 914, 936
FatI	CATG	8 cut(s)	4, 69, 81, 610, 735, 826, 910, 932
FauNDI	CATATG	2 cut(s)	571, 904
FbaI	TGATCA	1 cut(s)	141
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	3 cut(s)	264, 267, 982
FokI	GGATG	4 cut(s)	131, 329, 418, 641
FriOI	GRGCYC	1 cut(s)	299
FseI	GGCCGGCC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	264, 267, 982
FspBI	CTAG	3 cut(s)	338, 822, 855
GluI	GCNGC	3 cut(s)	264, 267, 982
GsaI	CCCAGC	1 cut(s)	628
GsuI	CTGGAG	1 cut(s)	981
HaeIII	GGCC	5 cut(s)	9, 13, 86, 105, 174
HapII	CCGG	3 cut(s)	10, 25, 102
HgaI	GACGC	1 cut(s)	815
Hin1II	CATG	8 cut(s)	8, 73, 85, 614, 739, 830, 914, 936
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	10, 25, 102
HphI	GGTGA	1 cut(s)	848
Hpy166II	GTNNAC	2 cut(s)	193, 724
Hpy188I	TCNGA	1 cut(s)	760
Hpy188III	TCNNGA	5 cut(s)	45, 358, 551, 855, 911
Hpy8I	GTNNAC	2 cut(s)	193, 724
Hpy99I	CGWCG	4 cut(s)	101, 304, 364, 809
HpyAV	CCTTC	2 cut(s)	272, 307
HpyCH4III	ACNGT	2 cut(s)	497, 518
HpyCH4IV	ACGT	2 cut(s)	96, 362
HpyCH4V	TGCA	7 cut(s)	4, 219, 266, 419, 735, 830, 984
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 25
HpyF3I	CTNAG	3 cut(s)	324, 633, 867
HpySE526I	ACGT	2 cut(s)	96, 362
Hsp92II	CATG	8 cut(s)	8, 73, 85, 614, 739, 830, 914, 936
KroI	GCCGGC	2 cut(s)	9, 101
KroNI	GCCGGC	2 cut(s)	11, 103
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	141, 929, 967
LmnI	GCTCC	3 cut(s)	223, 686, 1001
Lsp1109I	GCAGC	3 cut(s)	250, 278, 968
LweI	GCATC	5 cut(s)	109, 396, 619, 649, 839
MaeI	CTAG	3 cut(s)	338, 822, 855
MaeII	ACGT	2 cut(s)	96, 362
MalI	GATC	3 cut(s)	143, 931, 969
MboI	GATC	3 cut(s)	141, 929, 967
MboII	GAAGA	5 cut(s)	137, 244, 340, 486, 887
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	8 cut(s)	48, 90, 150, 351, 390, 431, 468, 797
MnlI	CCTC	7 cut(s)	71, 74, 379, 559, 568, 571, 726
Mph1103I	ATGCAT	2 cut(s)	6, 832
MroNI	GCCGGC	2 cut(s)	9, 101
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	2 cut(s)	204, 669
MslI	CAYNNNNRTG	4 cut(s)	455, 772, 915, 963
MspA1I	CMGCKG	1 cut(s)	1016
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	10, 25, 102
MspR9I	CCNGG	2 cut(s)	991, 999
MvaI	CCWGG	2 cut(s)	991, 999
MwoI	GCNNNNNNNGC	2 cut(s)	10, 25
NaeI	GCCGGC	2 cut(s)	11, 103
NcoI	CCATGG	1 cut(s)	81
NdeI	CATATG	2 cut(s)	571, 904
NdeII	GATC	3 cut(s)	141, 929, 967
NgoMIV	GCCGGC	2 cut(s)	9, 101
NlaIII	CATG	8 cut(s)	8, 73, 85, 614, 739, 830, 914, 936
NlaIV	GGNNCC	1 cut(s)	582
NsiI	ATGCAT	2 cut(s)	6, 832
NspI	RCATGY	1 cut(s)	830
PagI	TCATGA	1 cut(s)	910
PdiI	GCCGGC	2 cut(s)	11, 103
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	488
PfoI	TCCNGGA	1 cut(s)	997
PkrI	GCNGC	3 cut(s)	265, 268, 983
PshBI	ATTAAT	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	299
Psp6I	CCWGG	2 cut(s)	989, 997
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	2 cut(s)	989, 997
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	172, 581
PstI	CTGCAG	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	1016
RigI	GGCCGGCC	1 cut(s)	13
RsaI	GTAC	3 cut(s)	779, 901, 1012
RsaNI	GTAC	3 cut(s)	778, 900, 1011
RseI	CAYNNNNRTG	4 cut(s)	455, 772, 915, 963
SacI	GAGCTC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	204, 669
SatI	GCNGC	3 cut(s)	264, 267, 982
Sau3AI	GATC	3 cut(s)	141, 929, 967
Sau96I	GGNCC	2 cut(s)	172, 581
ScrFI	CCNGG	2 cut(s)	991, 999
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	5 cut(s)	109, 396, 619, 649, 839
SfcI	CTRYAG	2 cut(s)	264, 615
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	4 cut(s)	455, 772, 915, 963
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	8 cut(s)	48, 90, 150, 351, 390, 431, 468, 797
SsiI	CCGC	1 cut(s)	243
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	3 cut(s)	338, 822, 855
SstI	GAGCTC	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	989, 997
StyI	CCWWGG	2 cut(s)	81, 682
TaaI	ACNGT	2 cut(s)	497, 518
TaiI	ACGT	2 cut(s)	99, 365
TaqI	TCGA	4 cut(s)	44, 302, 513, 970
TasI	AATT	8 cut(s)	48, 90, 150, 351, 390, 431, 468, 797
TatI	WGTACW	1 cut(s)	1010
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	204, 669
Tru9I	TTAA	2 cut(s)	204, 669
TscAI	CASTG	1 cut(s)	523
TseI	GCWGC	3 cut(s)	263, 266, 981
TspDTI	ATGAA	5 cut(s)	456, 532, 599, 608, 752
TspRI	CASTG	1 cut(s)	523
Van91I	CCANNNNNTGG	1 cut(s)	488
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	581
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	3 cut(s)	48, 351, 797
XbaI	TCTAGA	1 cut(s)	854
XceI	RCATGY	1 cut(s)	830
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	3 cut(s)	338, 822, 855
Zsp2I	ATGCAT	2 cut(s)	6, 832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.