MD06G1102500.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015778
Physical Location & Seq
Reverse (-)
23954696 .. 23957493
2798 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1102500.v1.1.491

Sequence Viewer

Length: 423 bp
ATGTTAATATGGTATCATGGAGCCAGTCTTGCTGGCGCTGTGATTCTTGACATGAATTTCTGCTGCTTCGATTCGTATCAGGACAAGGCAACATGGGTGGTTCTGTACAACGGAAAGAGTAACAACAATGAAATGTTTAGGATTCTTATGCATGTGTTTCCTTCTCTGCTTACTTCACGTGTACCTTCTTCTACTGCATTATTAGGCAAAGTTGCTAAGCCTTCTCTCTGGCATCATAGATTTGCGCACCCTTCAAATGAAATTTTGGAAGCAATGTTGAAAGTCTCTAGTATGTCAAGTTCTAGTGATGTAATTACTCACACTTGTTCTCATTGTATTACTGGAAAAATGAGTAGGCTAGCCTTTTCTGAAAAGTTAGATAGAGTTGATATACCATTTCATAAGGTTAATACTGATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.73

Weight (kDa)

8.4

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag_pre-integrs PF13976 60 - 117 6.7e-10 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 246
AcsI RAATTY 2 cut(s) 55, 261
AcvI CACGTG 1 cut(s) 179
AfaI GTAC 2 cut(s) 107, 183
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 2 cut(s) 255, 280
Alw26I GTCTC 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 2 cut(s) 55, 261
AspLEI GCGC 2 cut(s) 38, 247
AsuNHI GCTAGC 1 cut(s) 358
BbrPI CACGTG 1 cut(s) 179
BbvI GCAGC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 3 cut(s) 288, 303, 359
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 1 cut(s) 64
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 22
BmsI GCATC 1 cut(s) 241
BmtI GCTAGC 1 cut(s) 362
Bpu1102I GCTNAGC 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 24, 346
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 75
BseMI GCAATG 1 cut(s) 279
BseNI ACTGG 2 cut(s) 24, 346
BseXI GCAGC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 289
Bsp1407I TGTACA 1 cut(s) 105
Bsp1720I GCTNAGC 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 22
BspOI GCTAGC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 279
BsrGI TGTACA 1 cut(s) 105
BsrI ACTGG 2 cut(s) 24, 346
BstAUI TGTACA 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 34, 360
BstDEI CTNAG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 247
BstMAI GTCTC 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 34, 360
CfoI GCGC 2 cut(s) 38, 247
Csp6I GTAC 2 cut(s) 106, 182
CspCI CAANNNNNGTGG 2 cut(s) 78, 113
CviAII CATG 4 cut(s) 17, 52, 93, 152
CviJI RGCY 4 cut(s) 23, 220, 358, 362
CviKI_1 RGCY 4 cut(s) 23, 220, 358, 362
CviQI GTAC 2 cut(s) 106, 182
DdeI CTNAG 1 cut(s) 216
Eco72I CACGTG 1 cut(s) 179
EcoT22I ATGCAT 1 cut(s) 153
FaeI CATG 4 cut(s) 20, 55, 96, 155
FatI CATG 4 cut(s) 16, 51, 92, 151
Fnu4HI GCNGC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 3 cut(s) 288, 303, 359
FspI TGCGCA 1 cut(s) 246
GlaI GCGC 2 cut(s) 37, 246
GluI GCNGC 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 39
HhaI GCGC 2 cut(s) 38, 247
Hin1II CATG 4 cut(s) 20, 55, 96, 155
Hin6I GCGC 2 cut(s) 36, 245
HinP1I GCGC 2 cut(s) 36, 245
HinfI GANTC 3 cut(s) 43, 71, 142
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 2 cut(s) 47, 80
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 171, 195, 231, 261
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 151, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 4 cut(s) 20, 55, 96, 155
HspAI GCGC 2 cut(s) 36, 245
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 5 cut(s) 18, 37, 65, 214, 327
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 241
MaeI CTAG 3 cut(s) 288, 303, 359
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 119
MboII GAAGA 1 cut(s) 180
MluCI AATT 3 cut(s) 55, 261, 312
Mph1103I ATGCAT 1 cut(s) 153
MseI TTAA 2 cut(s) 5, 408
MwoI GCNNNNNNNGC 1 cut(s) 29
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 4 cut(s) 20, 55, 96, 155
NlaIV GGNNCC 1 cut(s) 22
NsbI TGCGCA 1 cut(s) 246
NsiI ATGCAT 1 cut(s) 153
NspI RCATGY 1 cut(s) 155
PfeI GAWTC 3 cut(s) 43, 71, 142
PkrI GCNGC 1 cut(s) 65
PmaCI CACGTG 1 cut(s) 179
PmlI CACGTG 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 179
PspCI CACGTG 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 22
PsrI GAACNNNNNNTAC 2 cut(s) 283, 315
RsaI GTAC 2 cut(s) 107, 183
RsaNI GTAC 2 cut(s) 106, 182
SaqAI TTAA 2 cut(s) 5, 408
SatI GCNGC 1 cut(s) 64
SetI ASST 3 cut(s) 181, 187, 408
SfaNI GCATC 1 cut(s) 241
Sse9I AATT 3 cut(s) 55, 261, 312
SspMI CTAG 3 cut(s) 288, 303, 359
TaiI ACGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 69
TasI AATT 3 cut(s) 55, 261, 312
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 3 cut(s) 43, 71, 142
Tru1I TTAA 2 cut(s) 5, 408
Tru9I TTAA 2 cut(s) 5, 408
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 4 cut(s) 68, 144, 273, 389
TspGWI ACGGA 1 cut(s) 126
XapI RAATTY 2 cut(s) 55, 261
XceI RCATGY 1 cut(s) 155
XspI CTAG 3 cut(s) 288, 303, 359
Zsp2I ATGCAT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.