gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATMG00710 |
| malus_domestica | MD05G1199900.v1.1 MD06G1102500.v1.1 MD11G1090400.v1.1 MD14G1120600.v1.1 |
| prunus_persica | Prupe.7G065900_v2.0.a1 |
| pyrus_communis | pycom01g10770 pycom03g09220 pycom03g16680 pycom11g06850 pycom12g11180 pycom14g05450 pycom17g14550 |
| rosa_chinensis | RchiOBHm_Chr4g0436251 |
| rosa_wichuraiana | Rw1G008760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 58 |
| AcuI | CTGAAG | 1 cut(s) | 183 |
| AfaI | GTAC | 1 cut(s) | 40 |
| AgsI | TTSAA | 1 cut(s) | 392 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 35, 67 |
| AluBI | AGCT | 3 cut(s) | 161, 182, 188 |
| AluI | AGCT | 3 cut(s) | 161, 182, 188 |
| AoxI | GGCC | 1 cut(s) | 196 |
| AspS9I | GGNCC | 1 cut(s) | 196 |
| BccI | CCATC | 1 cut(s) | 367 |
| BfaI | CTAG | 3 cut(s) | 33, 126, 158 |
| BfmI | CTRYAG | 1 cut(s) | 183 |
| BmgT120I | GGNCC | 1 cut(s) | 196 |
| BmsI | GCATC | 2 cut(s) | 247, 289 |
| BpmI | CTGGAG | 2 cut(s) | 123, 162 |
| BsaBI | GATNNNNATC | 1 cut(s) | 303 |
| Bse1I | ACTGG | 2 cut(s) | 140, 287 |
| Bse8I | GATNNNNATC | 1 cut(s) | 303 |
| BseGI | GGATG | 1 cut(s) | 238 |
| BseJI | GATNNNNATC | 1 cut(s) | 303 |
| BseMII | CTCAG | 1 cut(s) | 103 |
| BseNI | ACTGG | 2 cut(s) | 140, 287 |
| BsgI | GTGCAG | 1 cut(s) | 150 |
| BshFI | GGCC | 1 cut(s) | 198 |
| BsnI | GGCC | 1 cut(s) | 198 |
| Bsp143I | GATC | 1 cut(s) | 406 |
| BspANI | GGCC | 1 cut(s) | 198 |
| BspCNI | CTCAG | 1 cut(s) | 102 |
| BsrI | ACTGG | 2 cut(s) | 140, 287 |
| BssMI | GATC | 1 cut(s) | 406 |
| BssNAI | GTATAC | 1 cut(s) | 59 |
| Bst1107I | GTATAC | 1 cut(s) | 59 |
| Bst4CI | ACNGT | 1 cut(s) | 326 |
| BstDEI | CTNAG | 1 cut(s) | 89 |
| BstF5I | GGATG | 1 cut(s) | 238 |
| BstKTI | GATC | 1 cut(s) | 409 |
| BstMBI | GATC | 1 cut(s) | 406 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 23, 108 |
| BstSFI | CTRYAG | 1 cut(s) | 183 |
| BstZ17I | GTATAC | 1 cut(s) | 59 |
| BsuRI | GGCC | 1 cut(s) | 198 |
| BtgZI | GCGATG | 1 cut(s) | 7 |
| BtsCI | GGATG | 1 cut(s) | 238 |
| Cfr13I | GGNCC | 1 cut(s) | 196 |
| Csp6I | GTAC | 1 cut(s) | 39 |
| CviAII | CATG | 1 cut(s) | 368 |
| CviJI | RGCY | 4 cut(s) | 161, 182, 188, 198 |
| CviKI_1 | RGCY | 4 cut(s) | 161, 182, 188, 198 |
| CviQI | GTAC | 1 cut(s) | 39 |
| DdeI | CTNAG | 1 cut(s) | 89 |
| DpnI | GATC | 1 cut(s) | 408 |
| DpnII | GATC | 1 cut(s) | 406 |
| Eco57I | CTGAAG | 1 cut(s) | 183 |
| FaeI | CATG | 1 cut(s) | 371 |
| FatI | CATG | 1 cut(s) | 367 |
| FblI | GTMKAC | 1 cut(s) | 58 |
| FokI | GGATG | 1 cut(s) | 225 |
| FspBI | CTAG | 3 cut(s) | 33, 126, 158 |
| GsuI | CTGGAG | 2 cut(s) | 123, 162 |
| HaeIII | GGCC | 1 cut(s) | 198 |
| Hin1II | CATG | 1 cut(s) | 371 |
| HinfI | GANTC | 1 cut(s) | 396 |
| Hpy166II | GTNNAC | 2 cut(s) | 39, 59 |
| Hpy188I | TCNGA | 1 cut(s) | 261 |
| Hpy8I | GTNNAC | 2 cut(s) | 39, 59 |
| HpyAV | CCTTC | 1 cut(s) | 158 |
| HpyCH4III | ACNGT | 1 cut(s) | 326 |
| HpyCH4V | TGCA | 2 cut(s) | 131, 343 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 23, 108 |
| HpyF3I | CTNAG | 1 cut(s) | 89 |
| Hsp92II | CATG | 1 cut(s) | 371 |
| Kzo9I | GATC | 1 cut(s) | 406 |
| LmnI | GCTCC | 1 cut(s) | 99 |
| LpnPI | CCDG | 5 cut(s) | 76, 82, 153, 192, 300 |
| LweI | GCATC | 2 cut(s) | 247, 289 |
| MaeI | CTAG | 3 cut(s) | 33, 126, 158 |
| MalI | GATC | 1 cut(s) | 408 |
| MboI | GATC | 1 cut(s) | 406 |
| MboII | GAAGA | 3 cut(s) | 77, 141, 144 |
| MluCI | AATT | 2 cut(s) | 145, 281 |
| MnlI | CCTC | 2 cut(s) | 244, 286 |
| MseI | TTAA | 3 cut(s) | 270, 329, 372 |
| MslI | CAYNNNNRTG | 1 cut(s) | 217 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 23, 108 |
| NdeII | GATC | 1 cut(s) | 406 |
| NlaIII | CATG | 1 cut(s) | 371 |
| PfeI | GAWTC | 1 cut(s) | 396 |
| PspPI | GGNCC | 1 cut(s) | 196 |
| RsaI | GTAC | 1 cut(s) | 40 |
| RsaNI | GTAC | 1 cut(s) | 39 |
| RseI | CAYNNNNRTG | 1 cut(s) | 217 |
| SaqAI | TTAA | 3 cut(s) | 270, 329, 372 |
| Sau3AI | GATC | 1 cut(s) | 406 |
| Sau96I | GGNCC | 1 cut(s) | 196 |
| SfaNI | GCATC | 2 cut(s) | 247, 289 |
| SfcI | CTRYAG | 1 cut(s) | 183 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 217 |
| Sse9I | AATT | 2 cut(s) | 145, 281 |
| SspMI | CTAG | 3 cut(s) | 33, 126, 158 |
| TaaI | ACNGT | 1 cut(s) | 326 |
| TasI | AATT | 2 cut(s) | 145, 281 |
| TfiI | GAWTC | 1 cut(s) | 396 |
| Tru1I | TTAA | 3 cut(s) | 270, 329, 372 |
| Tru9I | TTAA | 3 cut(s) | 270, 329, 372 |
| TspDTI | ATGAA | 1 cut(s) | 10 |
| TspGWI | ACGGA | 1 cut(s) | 389 |
| XmiI | GTMKAC | 1 cut(s) | 58 |
| XspI | CTAG | 3 cut(s) | 33, 126, 158 |