Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0015778

Physical Location & Seq

Genomic Coordinates Reverse (-)

17847285 .. 17848005

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16680.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAGATTGGTTCTGCAAAATTGTGCACTGTATCAAACTCTTTAGTTTTGAGAAGTGTTTTACATGTTCTAACCATTGTTATTAGTTTACTATCAGTAAAACAATTGTGTAAAGACAATTATTGTTGGTTCATCTGTGATGATACAAATTTTTGTGTGCAGGACAAAGTAACCAAGGTTGTAATCTACCAAGGAATGAGTAATGATTGTGAGTTATTTCAGATACCAACAAAGATACTTACAAAGGGTCCAGTGTCTTCAGCAAAGGAGTCTATGGGGTTGCTTGGTCAAAAAGTGAAGTCTATATTATGGCATCAAAGGTGTGGTCATCATAGCAATGAAGTACTATTTGCAATGTTGAAGAATTCTGATATAGTTAGTTTTGTTGATGATAAACAACATTTGTGTTCAGCTTGTATTTCTAGAAAAATGTCAAGATCACCATTTGTAGATAGGAAAGAGTCTTTTGTTTTTCCTTTTCAAAAGATTCATTATGATCTTTGGGGTCCTTCACCCACAAAGTTCATAGAGGGTTACAAATACTATGTGAGTTTTGTTGATGATTTTACCAGTTATGTATGGATATACCCATTGATCAATAAATCAGAAGTTTTTGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

208

Amino Acids

23.8

Weight (kDa)

8.66

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00710
malus_domestica	MD05G1199900.v1.1 MD06G1102500.v1.1 MD11G1090400.v1.1 MD14G1120600.v1.1
prunus_persica	Prupe.7G065900_v2.0.a1
pyrus_communis	pycom01g10770 pycom03g09220 pycom03g16680 pycom11g06850 pycom12g11180 pycom14g05450 pycom17g14550
rosa_chinensis	RchiOBHm_Chr4g0436251
rosa_wichuraiana	Rw1G008760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	148, 364
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	345
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	361, 482
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
Alw21I	GWGCWC	1 cut(s)	29
Alw44I	GTGCAC	1 cut(s)	25
ApaLI	GTGCAC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	148, 364
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
AspS9I	GGNCC	2 cut(s)	248, 506
AsuHPI	GGTGA	2 cut(s)	432, 504
AvaII	GGWCC	2 cut(s)	248, 506
BaeGI	GKGCMC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	29
BclI	TGATCA	1 cut(s)	594
BfaI	CTAG	1 cut(s)	423
BmcAI	AGTACT	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	248, 506
BmgT120I	GGNCC	2 cut(s)	248, 506
BmiI	GGNNCC	2 cut(s)	249, 507
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	174, 190
Bse1I	ACTGG	2 cut(s)	251, 570
Bse3DI	GCAATG	2 cut(s)	343, 360
BseDI	CCNNGG	2 cut(s)	174, 190
BseMI	GCAATG	2 cut(s)	343, 360
BseNI	ACTGG	2 cut(s)	251, 570
BseSI	GKGCMC	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	437, 496, 594
BspLI	GGNNCC	2 cut(s)	249, 507
BsrDI	GCAATG	2 cut(s)	343, 360
BsrI	ACTGG	2 cut(s)	251, 570
BssECI	CCNNGG	2 cut(s)	174, 190
BssMI	GATC	3 cut(s)	437, 496, 594
BssT1I	CCWWGG	2 cut(s)	174, 190
Bst4CI	ACNGT	1 cut(s)	31
BstKTI	GATC	3 cut(s)	440, 499, 597
BstMBI	GATC	3 cut(s)	437, 496, 594
BstNSI	RCATGY	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	27, 258
Cfr13I	GGNCC	2 cut(s)	248, 506
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	1 cut(s)	413
CviKI_1	RGCY	1 cut(s)	413
CviQI	GTAC	1 cut(s)	344
DpnI	GATC	3 cut(s)	439, 498, 596
DpnII	GATC	3 cut(s)	437, 496, 594
Eco130I	CCWWGG	2 cut(s)	174, 190
Eco47I	GGWCC	2 cut(s)	248, 506
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	174, 190
ErhI	CCWWGG	2 cut(s)	174, 190
FaeI	CATG	1 cut(s)	68
FatI	CATG	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	594
FspBI	CTAG	1 cut(s)	423
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	3 cut(s)	269, 461, 487
HphI	GGTGA	2 cut(s)	432, 504
Hpy166II	GTNNAC	2 cut(s)	27, 89
Hpy188I	TCNGA	3 cut(s)	222, 370, 607
Hpy188III	TCNNGA	2 cut(s)	423, 435
Hpy8I	GTNNAC	2 cut(s)	27, 89
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	4 cut(s)	17, 27, 160, 353
Hsp92II	CATG	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	3 cut(s)	437, 496, 594
LpnPI	CCDG	3 cut(s)	146, 264, 583
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	169, 533
MalI	GATC	3 cut(s)	439, 498, 596
MboI	GATC	3 cut(s)	437, 496, 594
MboII	GAAGA	3 cut(s)	16, 249, 373
MfeI	CAATTG	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	5 cut(s)	20, 104, 118, 148, 364
MlyI	GAGTC	2 cut(s)	278, 470
MnlI	CCTC	1 cut(s)	523
MseI	TTAA	1 cut(s)	622
MslI	CAYNNNNRTG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	104
NdeII	GATC	3 cut(s)	437, 496, 594
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	249, 507
NspI	RCATGY	1 cut(s)	68
PciI	ACATGT	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	487
PleI	GAGTC	2 cut(s)	277, 469
PpsI	GAGTC	2 cut(s)	277, 469
PpuMI	RGGWCCY	1 cut(s)	506
PscI	ACATGT	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	506
PspN4I	GGNNCC	2 cut(s)	249, 507
PspPI	GGNCC	2 cut(s)	248, 506
PspPPI	RGGWCCY	1 cut(s)	506
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	622
Sau3AI	GATC	3 cut(s)	437, 496, 594
Sau96I	GGNCC	2 cut(s)	248, 506
ScaI	AGTACT	1 cut(s)	345
SchI	GAGTC	2 cut(s)	278, 470
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	3 cut(s)	180, 323, 415
SfaNI	GCATC	1 cut(s)	322
SinI	GGWCC	2 cut(s)	248, 506
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	5 cut(s)	20, 104, 118, 148, 364
SspMI	CTAG	1 cut(s)	423
StyI	CCWWGG	2 cut(s)	174, 190
TaaI	ACNGT	1 cut(s)	31
TasI	AATT	5 cut(s)	20, 104, 118, 148, 364
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	1 cut(s)	622
Tru9I	TTAA	1 cut(s)	622
TscAI	CASTG	2 cut(s)	34, 258
TspDTI	ATGAA	5 cut(s)	17, 121, 354, 479, 514
TspRI	CASTG	2 cut(s)	34, 258
VneI	GTGCAC	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	248, 506
XapI	RAATTY	2 cut(s)	148, 364
XbaI	TCTAGA	1 cut(s)	422
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	1 cut(s)	423
ZrmI	AGTACT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.