Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0015778

Physical Location & Seq

Genomic Coordinates Forward (+)

19160608 .. 19165520

Gene Structure 4913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCAAAATCAGACCTTTCTAATCCTTATTACACCTATCATTCAGATCATCCAGGGCTAGTCCTAGTCTCTAAACCTCTTAATGGAGACAATTATGCAGGATGGAAGAGGGCTATGACTTTAGCTCTGAATTCCAAGAACAAGCTGGGTTTTGTGAATGGTATTATAACGGCCCCTTCAGAAGAGACCGATCTAGAAGGCTATGCTACTTGGTCACGCTGCAATGATATGGTCCACTCACGGATCATTAAGACATTAGATCCAGAAATCAGTGACAGTGTCATCTACTATCCTACCGCACATGAAGTATGGGAAGACCTCAGTGAACGCGGGAACTTTCCCTCCTTGCTAGCACAACTCAAATTTAATGATCATGTTAATTTAAGTCCTTACTTGTCCTACATCAGTGGAGCATTAGCAGGTTGTGCGGCTACTGTCAGATCATACCCATTTGATCTTCTAAGAACCTTGCTAGTGTATCCAACTATGAGGTCTGCATTTGTCGATATAGTTAAAACTCGTGGATTTCGAGGATTGTATGCTGGATTATCACCAACACTGGTTGAGATTGTTCCTTATGCAGGCTTGCAATTTGGTACCTATGACACATTTAAGCGCTGGACCATGTCTAGTGCAGACTTATACAGTACAGATAATAGTCTCACAAGCTTTCAGCTTTTCCTCTGTGGTCTGGCTGCTGGGACATGTGCCAAACTTGTCTGTCATCCATTTGATGTGGTCAAGAAAAGATTCCAGATTGAAGGACTACAGAGGCACCCAAGATATGGGGCTCGAGTAGAGCACCGTGCCTACAGCAATATGGTTGATGCTTTGCGACGAATAGTGCAGAAAGAAGGCTGGGCTGGTCTTTATAAGGGAATAGTCCCAGCAACTGTCAAAGCTGCTCCTGCTGGTGCAGTGACATTTGTGGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

312

Amino Acids

34.63

Weight (kDa)

8.82

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_3	PF14244	14 - 59	3e-21	gag-polypeptide of LTR copia-type
Mito_carr	PF00153	128 - 209	6.8e-18	Mitochondrial carrier protein
Mito_carr	PF00153	221 - 311	3.2e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00710
malus_domestica	MD05G1199900.v1.1 MD06G1102500.v1.1 MD11G1090400.v1.1 MD14G1120600.v1.1
prunus_persica	Prupe.7G065900_v2.0.a1
pyrus_communis	pycom01g10770 pycom03g09220 pycom03g16680 pycom11g06850 pycom12g11180 pycom14g05450 pycom17g14550
rosa_chinensis	RchiOBHm_Chr4g0436251
rosa_wichuraiana	Rw1G008760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	167, 873
Acc36I	ACCTGC	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	2 cut(s)	596, 774
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccII	CGCG	1 cut(s)	330
AciI	CCGC	3 cut(s)	297, 330, 428
AclWI	GGATC	2 cut(s)	251, 254
AcsI	RAATTY	2 cut(s)	130, 362
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	2 cut(s)	598, 649
AfeI	AGCGCT	1 cut(s)	617
AfiI	CCNNNNNNNGG	3 cut(s)	83, 581, 785
AflIII	ACRYGT	1 cut(s)	704
AgsI	TTSAA	1 cut(s)	761
AjnI	CCWGG	1 cut(s)	52
AloI	GAACNNNNNNTCC	2 cut(s)	326, 358
AluBI	AGCT	6 cut(s)	125, 145, 669, 676, 902, 936
AluI	AGCT	6 cut(s)	125, 145, 669, 676, 902, 936
Alw21I	GWGCWC	1 cut(s)	804
Alw26I	GTCTC	4 cut(s)	73, 81, 179, 665
AlwI	GGATC	2 cut(s)	251, 254
AlwNI	CAGNNNCTG	1 cut(s)	893
Ama87I	CYCGRG	1 cut(s)	792
Aor51HI	AGCGCT	1 cut(s)	617
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	3 cut(s)	219, 695, 902
ApoI	RAATTY	2 cut(s)	130, 362
Asp700I	GAANNNNTTC	1 cut(s)	749
Asp718I	GGTACC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	3 cut(s)	172, 232, 621
AsuHPI	GGTGA	1 cut(s)	543
AsuNHI	GCTAGC	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	792
AvaII	GGWCC	2 cut(s)	232, 621
BanI	GGYRCC	2 cut(s)	596, 774
BanII	GRGCYC	1 cut(s)	793
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	804
BbvI	GCAGC	3 cut(s)	206, 682, 889
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	489
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	4 cut(s)	73, 81, 179, 665
BfaI	CTAG	6 cut(s)	59, 65, 194, 350, 473, 630
BfmI	CTRYAG	2 cut(s)	767, 811
BfoI	RGCGCY	1 cut(s)	619
BfuAI	ACCTGC	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	4 cut(s)	220, 429, 696, 903
BlsI	GCNGC	4 cut(s)	221, 430, 697, 904
Bme1390I	CCNGG	1 cut(s)	54
Bme18I	GGWCC	2 cut(s)	232, 621
BmeT110I	CYCGRG	1 cut(s)	792
BmgT120I	GGNCC	3 cut(s)	172, 232, 621
BmiI	GGNNCC	3 cut(s)	174, 598, 776
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	817
BmtI	GCTAGC	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 581, 785
Bse1I	ACTGG	1 cut(s)	564
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	3 cut(s)	49, 107, 724
BseLI	CCNNNNNNNGG	3 cut(s)	83, 581, 785
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	564
BseXI	GCAGC	3 cut(s)	206, 682, 889
BseYI	CCCAGC	4 cut(s)	145, 698, 858, 886
BsgI	GTGCAG	3 cut(s)	654, 866, 936
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	2 cut(s)	596, 774
BsiHKAI	GWGCWC	1 cut(s)	804
BsiHKCI	CYCGRG	1 cut(s)	792
BslFI	GGGAC	2 cut(s)	715, 869
BslI	CCNNNNNNNGG	3 cut(s)	83, 581, 785
BsmAI	GTCTC	4 cut(s)	73, 81, 179, 665
BsmFI	GGGAC	2 cut(s)	715, 869
BsnI	GGCC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	792
Bsp1286I	GDGCHC	2 cut(s)	793, 804
Bsp143I	GATC	7 cut(s)	46, 190, 243, 259, 370, 440, 454
BspACI	CCGC	3 cut(s)	297, 330, 428
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	174, 598, 776
BspMI	ACCTGC	1 cut(s)	410
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	251, 254
BspT107I	GGYRCC	2 cut(s)	596, 774
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	564
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	7 cut(s)	46, 190, 243, 259, 370, 440, 454
BssSI	CACGAG	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	5 cut(s)	278, 436, 647, 806, 895
Bst6I	CTCTTC	2 cut(s)	101, 177
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	4 cut(s)	351, 583, 587, 934
BstDEI	CTNAG	2 cut(s)	320, 461
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstF5I	GGATG	3 cut(s)	49, 107, 724
BstFNI	CGCG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	619
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	7 cut(s)	49, 193, 246, 262, 373, 443, 457
BstMAI	GTCTC	4 cut(s)	73, 81, 179, 665
BstMBI	GATC	7 cut(s)	46, 190, 243, 259, 370, 440, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 908
BstNI	CCWGG	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	708
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	2 cut(s)	767, 811
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	3 cut(s)	206, 682, 889
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	49, 107, 724
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	6 cut(s)	277, 283, 328, 412, 557, 924
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	4 cut(s)	351, 583, 587, 934
CaiI	CAGNNNCTG	1 cut(s)	893
CfoI	GCGC	1 cut(s)	618
Cfr13I	GGNCC	3 cut(s)	172, 232, 621
Csp6I	GTAC	2 cut(s)	597, 648
CviAII	CATG	4 cut(s)	302, 374, 625, 705
CviQI	GTAC	2 cut(s)	597, 648
DdeI	CTNAG	2 cut(s)	320, 461
DpnI	GATC	7 cut(s)	48, 192, 245, 261, 372, 442, 456
DpnII	GATC	7 cut(s)	46, 190, 243, 259, 370, 440, 454
Eam1104I	CTCTTC	2 cut(s)	101, 177
EarI	CTCTTC	2 cut(s)	101, 177
Eco24I	GRGCYC	1 cut(s)	793
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	232, 621
Eco47III	AGCGCT	1 cut(s)	617
Eco57I	CTGAAG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	792
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	793
FaeI	CATG	4 cut(s)	305, 377, 628, 708
FaqI	GGGAC	2 cut(s)	715, 869
FatI	CATG	4 cut(s)	301, 373, 624, 704
FauI	CCCGC	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	4 cut(s)	220, 429, 696, 903
FokI	GGATG	3 cut(s)	36, 114, 711
FriOI	GRGCYC	1 cut(s)	793
Fsp4HI	GCNGC	4 cut(s)	220, 429, 696, 903
FspBI	CTAG	6 cut(s)	59, 65, 194, 350, 473, 630
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	4 cut(s)	220, 429, 696, 903
GsaI	CCCAGC	4 cut(s)	149, 702, 862, 890
HaeII	RGCGCY	1 cut(s)	619
HaeIII	GGCC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	4 cut(s)	305, 377, 628, 708
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	667
HinfI	GANTC	1 cut(s)	750
HphI	GGTGA	1 cut(s)	543
Hpy166II	GTNNAC	2 cut(s)	235, 326
Hpy188I	TCNGA	5 cut(s)	13, 46, 129, 181, 440
Hpy188III	TCNNGA	4 cut(s)	194, 263, 742, 754
Hpy8I	GTNNAC	2 cut(s)	235, 326
Hpy99I	CGWCG	1 cut(s)	840
HpyAV	CCTTC	4 cut(s)	186, 191, 755, 848
HpyCH4III	ACNGT	5 cut(s)	278, 436, 647, 806, 895
HpyCH4V	TGCA	8 cut(s)	98, 222, 497, 581, 589, 635, 847, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 908
HpyF3I	CTNAG	2 cut(s)	320, 461
Hsp92II	CATG	4 cut(s)	305, 377, 628, 708
HspAI	GCGC	1 cut(s)	616
KpnI	GGTACC	1 cut(s)	600
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	7 cut(s)	46, 190, 243, 259, 370, 440, 454
LmnI	GCTCC	2 cut(s)	410, 910
Lsp1109I	GCAGC	3 cut(s)	206, 682, 889
LweI	GCATC	1 cut(s)	817
MaeI	CTAG	6 cut(s)	59, 65, 194, 350, 473, 630
MaeIII	GTNAC	3 cut(s)	213, 272, 919
MalI	GATC	7 cut(s)	48, 192, 245, 261, 372, 442, 456
MboI	GATC	7 cut(s)	46, 190, 243, 259, 370, 440, 454
MboII	GAAGA	4 cut(s)	118, 194, 326, 449
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	793, 804
MluCI	AATT	5 cut(s)	91, 130, 362, 379, 590
MmeI	TCCRAC	1 cut(s)	506
MnlI	CCTC	8 cut(s)	87, 102, 329, 352, 483, 524, 692, 765
MroXI	GAANNNNTTC	1 cut(s)	749
MseI	TTAA	7 cut(s)	81, 249, 366, 378, 383, 513, 612
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	425, 908
NdeII	GATC	7 cut(s)	46, 190, 243, 259, 370, 440, 454
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	4 cut(s)	305, 377, 628, 708
NlaIV	GGNNCC	3 cut(s)	174, 598, 776
NmuCI	GTSAC	3 cut(s)	213, 272, 919
NspI	RCATGY	1 cut(s)	708
PaeR7I	CTCGAG	1 cut(s)	792
PciI	ACATGT	1 cut(s)	704
PcsI	WCGNNNNNNNCGW	1 cut(s)	526
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	1 cut(s)	750
PflFI	GACNNNGTC	2 cut(s)	278, 625
PflMI	CCANNNNNTGG	1 cut(s)	785
PkrI	GCNGC	4 cut(s)	221, 430, 697, 904
PscI	ACATGT	1 cut(s)	704
PsiI	TTATAA	2 cut(s)	167, 873
Psp6I	CCWGG	1 cut(s)	52
PspFI	CCCAGC	4 cut(s)	145, 698, 858, 886
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	3 cut(s)	174, 598, 776
PspPI	GGNCC	3 cut(s)	172, 232, 621
PspXI	VCTCGAGB	1 cut(s)	792
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	259
PsyI	GACNNNGTC	2 cut(s)	278, 625
RsaI	GTAC	2 cut(s)	598, 649
RsaNI	GTAC	2 cut(s)	597, 648
SaqAI	TTAA	7 cut(s)	81, 249, 366, 378, 383, 513, 612
SatI	GCNGC	4 cut(s)	220, 429, 696, 903
Sau3AI	GATC	7 cut(s)	46, 190, 243, 259, 370, 440, 454
Sau96I	GGNCC	3 cut(s)	172, 232, 621
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	793, 804
SfaNI	GCATC	1 cut(s)	817
SfcI	CTRYAG	2 cut(s)	767, 811
Sfr274I	CTCGAG	1 cut(s)	792
SinI	GGWCC	2 cut(s)	232, 621
SlaI	CTCGAG	1 cut(s)	792
SmlI	CTYRAG	1 cut(s)	792
SmoI	CTYRAG	1 cut(s)	792
Sse9I	AATT	5 cut(s)	91, 130, 362, 379, 590
SsiI	CCGC	3 cut(s)	297, 330, 428
SspMI	CTAG	6 cut(s)	59, 65, 194, 350, 473, 630
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	5 cut(s)	278, 436, 647, 806, 895
TaqI	TCGA	3 cut(s)	504, 529, 793
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	5 cut(s)	91, 130, 362, 379, 590
TatI	WGTACW	1 cut(s)	647
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	750
Tru1I	TTAA	7 cut(s)	81, 249, 366, 378, 383, 513, 612
Tru9I	TTAA	7 cut(s)	81, 249, 366, 378, 383, 513, 612
TscAI	CASTG	6 cut(s)	277, 283, 328, 412, 564, 924
TseFI	GTSAC	3 cut(s)	213, 272, 919
TseI	GCWGC	3 cut(s)	219, 695, 902
Tsp45I	GTSAC	3 cut(s)	213, 272, 919
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	6 cut(s)	277, 283, 328, 412, 564, 924
Tth111I	GACNNNGTC	2 cut(s)	278, 625
Van91I	CCANNNNNTGG	1 cut(s)	785
VpaK11BI	GGWCC	2 cut(s)	232, 621
XagI	CCTNNNNNAGG	1 cut(s)	579
XapI	RAATTY	2 cut(s)	130, 362
XbaI	TCTAGA	1 cut(s)	193
XceI	RCATGY	1 cut(s)	708
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XhoI	CTCGAG	1 cut(s)	792
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	6 cut(s)	59, 65, 194, 350, 473, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.