MD06G1102800.v1.1

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0008950
Physical Location & Seq
Forward (+)
23976318 .. 23977467
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1102800.v1.1.491

Sequence Viewer

Length: 399 bp
ATGTTGTTAGGAAAGCTGAAAAGCTCGCTGGCCCGATTCGACCTGGAGATTATTGGTAAGTATGATTTCAGAGCCGGATTCTGGGGTGTGATGGGCCAAGCTTGCCTCGGCATAATTCCTCCTTTTATTGAAGAATTCAATTACCCCATTCCAACAAATTGTGCTGCTGGCAATACCGGTGTCTATGTAAACGGGAGAGAGCTACATCCGAGAGATTTGGACCTGCTTGCAAGGAGAGGACTACCAACTACAAGAGAGAAATTTTATATCGTCGAAATGTCTGGGAGAGTGGTGGATGAGGACTCAGGGGAAGATTTAAAAAGCCTCGGCAAACTTGCCCCCACAATTGAGAAGGCAAAGCTTGGATTTGGCATGAAGGTCCCCAGAATGGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

133

Amino Acids

14.61

Weight (kDa)

8.58

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 231
AcsI RAATTY 2 cut(s) 134, 260
AfiI CCNNNNNNNGG 2 cut(s) 81, 388
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 2 cut(s) 131, 139
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 5 cut(s) 16, 24, 101, 202, 361
AluI AGCT 5 cut(s) 16, 24, 101, 202, 361
AoxI GGCC 2 cut(s) 30, 94
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 2 cut(s) 134, 260
AsiGI ACCGGT 1 cut(s) 176
AspS9I GGNCC 4 cut(s) 31, 94, 220, 379
AvaII GGWCC 2 cut(s) 220, 379
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 231
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 2 cut(s) 220, 379
BmgT120I GGNCC 4 cut(s) 31, 94, 220, 379
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 106, 325
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 388
Bse118I RCCGGY 1 cut(s) 176
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 106, 325
BseGI GGATG 2 cut(s) 205, 301
BseLI CCNNNNNNNGG 2 cut(s) 81, 388
BseMII CTCAG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 151
BshFI GGCC 2 cut(s) 32, 96
BshTI ACCGGT 1 cut(s) 176
BsiSI CCGG 2 cut(s) 75, 177
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 81, 388
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 2 cut(s) 32, 96
BspANI GGCC 2 cut(s) 32, 96
BspCNI CTCAG 1 cut(s) 317
BspLI GGNNCC 1 cut(s) 381
BspMI ACCTGC 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 106, 325
Bst2UI CCWGG 1 cut(s) 44
BstC8I GCNNGC 5 cut(s) 26, 30, 103, 169, 228
BstDEI CTNAG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 205, 301
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 151
BsuRI GGCC 2 cut(s) 32, 96
BtsCI GGATG 2 cut(s) 205, 301
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 5 cut(s) 26, 30, 103, 169, 228
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 4 cut(s) 31, 94, 220, 379
CspAI ACCGGT 1 cut(s) 176
CviAII CATG 1 cut(s) 373
DdeI CTNAG 1 cut(s) 304
DraI TTTAAA 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 220, 379
EcoO109I RGGNCCY 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 376
FaiI YATR 5 cut(s) 63, 113, 186, 267, 374
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 2 cut(s) 192, 308
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 2 cut(s) 32, 96
HapII CCGG 2 cut(s) 75, 177
Hin1II CATG 1 cut(s) 376
HindIII AAGCTT 2 cut(s) 99, 359
HinfI GANTC 3 cut(s) 36, 78, 302
HpaII CCGG 2 cut(s) 75, 177
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 71, 210
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 346, 370
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 304
Hsp92II CATG 1 cut(s) 376
Lsp1109I GCAGC 1 cut(s) 151
MboII GAAGA 2 cut(s) 143, 323
MfeI CAATTG 1 cut(s) 345
MluCI AATT 6 cut(s) 114, 134, 139, 157, 260, 345
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 5 cut(s) 116, 129, 230, 292, 335
MseI TTAA 1 cut(s) 317
MspI CCGG 2 cut(s) 75, 177
MspR9I CCNGG 1 cut(s) 44
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 102
NlaIII CATG 1 cut(s) 376
NlaIV GGNNCC 1 cut(s) 381
NmeAIII GCCGAG 2 cut(s) 87, 306
PfeI GAWTC 2 cut(s) 36, 78
PinAI ACCGGT 1 cut(s) 176
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PpuMI RGGWCCY 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 4 cut(s) 31, 94, 220, 379
PspPPI RGGWCCY 1 cut(s) 379
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 1 cut(s) 165
Sau96I GGNCC 4 cut(s) 31, 94, 220, 379
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 44
SetI ASST 8 cut(s) 18, 26, 45, 103, 204, 225, 363, 381
SinI GGWCC 2 cut(s) 220, 379
Sse9I AATT 6 cut(s) 114, 134, 139, 157, 260, 345
StyD4I CCNGG 1 cut(s) 42
TaqI TCGA 2 cut(s) 39, 273
TasI AATT 6 cut(s) 114, 134, 139, 157, 260, 345
TfiI GAWTC 2 cut(s) 36, 78
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 389
VpaK11BI GGWCC 2 cut(s) 220, 379
XapI RAATTY 2 cut(s) 134, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.