RLG00000004123

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008950
Physical Location & Seq
Forward (+)
56407325 .. 56413389
6065 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004123

Sequence Viewer

Length: 3033 bp
ATGAAGAAAGAAGAAAAAGAAGAAGAAGGAGAAGGTGGTGTAAGTGCTCGGATATGGGACTGTGGGAGTCCGTTGTACGATTCGTACGAGTTAGCTTCAGTTGGTCGACTTCTAGAGCGACACACCAGGGCCTTGCCTCTTCCTAATGATCAGGAGACGAAGAAGAGGACGAAGAAGAGCAACATCATTGTTCAGAAAGCCAAAAGTTTGAGGAGCGGATTTCGTAATCTTCTTGGGACTTTTGGACTACGCAGGAAGAAAAAGATGCGTGTGTCCACGCGGAGGAAAAACCACAAAATTATAGAGCAACTAGATGATGACCTACCGTCCAATAACAAGGGCTTGAAGACCAGAGCTATATCTGACTCCTCTGTTTACCTGAGGGCGTATGACAAATTCAAGAAGTTGGGTGGTAGTTTTAGTTTCTGGTTTGAGATTGAAAAGAAAGTGATGGACTTGAGGCGAGGTAGAGGAAAAGAGAGGGTCTTTGGAGAAAGAAAGGTTGATTCCAGTAGTAGTAGTACTAGTTCATTAAGAAGAGAGAATAAAGAGGTTTTCGATGATAATCATATTAATGTTAGGGAAGGGGTTAGGGGTTTAAGGCTTGAGGAAAGTGGTGCAGCGCAGAAAAAGGAGTTTGTTGAAAGATATAGTCGATTATCGGAGTTCCCAATTGATAATAGAATCCCTGGAAATGATCTTGACACGAATATGAATAGGTCCGAGTCTGTAAATTCAAGTGTAGGGGATATTTCAGCCCAATTAAGGTATCTTGCTGGGGCATTGAGATCAAGGGAAAGTATGGACCAGAGGGGTGTTGAAAGAGATCGGTATGAGGGGTTTTATGGCAACATCAGGGTTGCTGCCGAGCGAGGAAGAATGCCAATTTCTTCTTATCCTAATGAGGGGCCTTCAGATTACCATCTAGAGTCTTCTTATGGTCATGGTGAGCACAAGTATGATGTGAATGGAGTGGAAAAGTTAGGACCTGATCGAGCTGAGCTTCTTAGGAAAATGGATGAGTTGAAGGAGCAACTTAGAAGATCTTATGATGTGGCAGATAAACCAAGGGATATGGTTCCCCCAGAGAGGAGTAGGACTCCACCTGATCCTTATGGTGACCGGTTAACTTATAGTCTTTCACTGCAGCAGCAATATGTTGTGGACAAGCAGATGCCAAGATCCCCTTACTTGAACTATAGCCATGGGCCGGTTCCTTTTATGGATCATCATAACATGCATACGCAGAACTTTTATCCTCAGAGGAATAACTTGAATGTGATTCCGGAATATGAGGATCCATCTCAGCCACAATTGACAAGGAGGCCTTCCCATCATCCACTCCAATACCCACAACCACAACCTCATGATTACTTTAGGGGGCAACACATGGGTTTCAGCCAGAATCCACTTGCATCATATCCACATGAACTTGTTGTACACTCGCCTGCATGCACTTGTTCAGGCTGCTACAACCAGAATTGGGTGGTTCCACCCCAAGTTCCTCATACTGATTTTGGCAACAGAAGTATTCCAAAAGGTCCAGTTAATTTGAATTCCTATCATCATGTCAATCCTGTTACATACAGCCCACATAATTACCCCAGAAATGCTAGTCCAACAAGATGGCAAGGTGATGTTGATTCAGACATTGATGGCCATGGTGAGAGATATCTTGGAAAGATGATCAACAGGAGGGCACTCATTTCGCATCCTTTCCGAGGTGGTGCCCCATTCATTACATGCTTCCATTGCTTCGAGTTGCTGAAACTTCCCAGAAAATTCAAGAAGAGAAGTAAGAATCAGTCGGAGCTACGTTGTGGTTCCTGTTTGACTATTATTTCAGTTGAACTTAATAACAAAAGGCTCATTACATCTGCATCTGCTCCTAAAGAATCCAAGCAATCATCTTCTGAGGTTGATCAAAATTCTAAGGAGGTATTAAAGGGCAATGTCTTAAGTTCTCCTGATTGTCTGAATGCTGATGACACCAACTCCTGCCATGATGATTTAGATAACTCTGGTCAGAACCTTCAGTTGATAGTTGCCGAAGATAATTCACTGGCAGAAGATGAGAGGCTGAACTTGGATAAATCTGAGAAGAGGGAAGGCCATAGCTCTTCATCTTCCATCTCTTCCAAGGAGGAAGAAGACACCCCATATAGTATGATTATTCAGAGAGACGTTTCTGATTCTGTTGAACAGCTCGCAAAAGATGCCTGTTCTCCAATAGCTCCAGGTTCACCTCTTTGGGAGCAGCCTGATAGCCCTTCCAAACATGAAGTAAGTGAGCAGCCTGATAGTCCTTCCAAACATGACGTAAGCAGAGATGGGAATGGAAATAAGAGTGCATGTATAGACCAAGACAAGGTGCTCTTTAGTAGGAGCACATCTGCACAGAAATCTGTGAAAGATATGTCAGTGGAAACCGAGGTGGATGATTCATACAATGACTATCTCAATACCAACATATCGCAGGACTCTACAGAGGCAAGAAAAGAAAATAGTCCCAAGATCCGCAAGGGTACTGATAACTTCTTGGTTGGTCTCATCAAAAAGAGTTTTAAAGATTCCTCGAAATCTAATCAAATTGTGGAGAGAACTAAGGTTTTGATCAATGGGCAACCTATACCAGATCATCTAGCAAGGAAAGCTGAAAAGCTTGCTGGCCCAATTCAACCTGGAGATTATTGGTATGACTTCAGAGCCGGATTCTGGGGTGTGATGGGTCACTCTTGCCTTGGCATAATTCCTCCATTTATTGAAGAGTTCAGTTACCCGATGCCAACAAATTGTGGTGCCGGCAATACTGGTGTCTATGTAAACGGAAGAGAGCTACATCAGAGAGATTTAAACCTACTTGCAAGCAGGGGACTGCCAACTACCAGAGAGAGATTTTATATCCTTGAAATTTCTGGGAGAGTTGTGGATGAGGACTCTGGGGAAGAGCTAAAATCCCTTGGCAGACTTGCCCCGACAATTGAGAAGGTAAAACATGGATTTGGCATGAAAGTCCCCAGAATGGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

1011

Amino Acids

114.38

Weight (kDa)

8.38

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_12 PF11331 575 - 618 1.4e-17 EDR4 zinc-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1727, 2798
AccBSI CCGCTC 1 cut(s) 216
AccI GTMKAC 1 cut(s) 106
AccII CGCG 1 cut(s) 280
AccIII TCCGGA 1 cut(s) 1285
AciI CCGC 3 cut(s) 216, 280, 2518
AclWI GGATC 6 cut(s) 1103, 1176, 1233, 1292, 1305, 2509
AcoI YGGCCR 1 cut(s) 1657
AcsI RAATTY 6 cut(s) 395, 733, 1555, 1781, 1927, 2910
AcuI CTGAAG 4 cut(s) 81, 897, 2018, 2686
AfaI GTAC 5 cut(s) 77, 86, 523, 1440, 2527
AflII CTTAAG 1 cut(s) 1957
AgeI ACCGGT 1 cut(s) 1122
AhdI GACNNNNNGTC 1 cut(s) 325
AhlI ACTAGT 1 cut(s) 524
AjnI CCWGG 4 cut(s) 125, 688, 2236, 2680
Alw21I GWGCWC 4 cut(s) 49, 954, 2376, 2390
Alw26I GTCTC 3 cut(s) 149, 2175, 2552
AlwI GGATC 6 cut(s) 1103, 1176, 1233, 1292, 1305, 2509
Aor13HI TCCGGA 1 cut(s) 1285
AoxI GGCC 7 cut(s) 129, 908, 1208, 1325, 1657, 2110, 2668
ApeKI GCWGC 7 cut(s) 620, 863, 1147, 1150, 1467, 2257, 2293
ApoI RAATTY 6 cut(s) 395, 733, 1555, 1781, 1927, 2910
AseI ATTAAT 1 cut(s) 573
AsiGI ACCGGT 1 cut(s) 1122
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 8 cut(s) 129, 720, 805, 908, 986, 1208, 1541, 2669
AsuHPI GGTGA 5 cut(s) 959, 1130, 1646, 1676, 2235
AvaII GGWCC 4 cut(s) 720, 805, 986, 1541
AxyI CCTNAGG 1 cut(s) 380
BaeGI GKGCMC 2 cut(s) 1702, 1732
BalI TGGCCA 1 cut(s) 1659
BamHI GGATCC 1 cut(s) 1297
BanI GGYRCC 2 cut(s) 1727, 2798
BbsI GAAGAC 3 cut(s) 353, 924, 2157
Bbv12I GWGCWC 4 cut(s) 49, 954, 2376, 2390
BbvI GCAGC 7 cut(s) 632, 850, 1159, 1162, 1454, 2269, 2305
BccI CCATC 9 cut(s) 445, 930, 1309, 1341, 1620, 1649, 2138, 2324, 2719
BcgI CGANNNNNNTGC 2 cut(s) 1689, 1723
BciT130I CCWGG 4 cut(s) 127, 690, 2238, 2682
BclI TGATCA 4 cut(s) 148, 1686, 1921, 2613
BcoDI GTCTC 3 cut(s) 149, 2175, 2552
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 6 cut(s) 113, 311, 525, 926, 1614, 2642
BfmI CTRYAG 3 cut(s) 1145, 1198, 2484
BfrI CTTAAG 1 cut(s) 1957
BglII AGATCT 1 cut(s) 1043
BisI GCNGC 7 cut(s) 621, 864, 1148, 1151, 1468, 2258, 2294
BlpI GCTNAGC 1 cut(s) 999
BlsI GCNGC 7 cut(s) 622, 865, 1149, 1152, 1469, 2259, 2295
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 4 cut(s) 127, 690, 2238, 2682
Bme18I GGWCC 4 cut(s) 720, 805, 986, 1541
BmeRI GACNNNNNGTC 1 cut(s) 325
BmgT120I GGNCC 8 cut(s) 129, 720, 805, 908, 986, 1208, 1541, 2669
BmiI GGNNCC 8 cut(s) 909, 1080, 1215, 1299, 1491, 1729, 1825, 2800
BmrFI CCNGG 4 cut(s) 127, 690, 2238, 2682
BmsI GCATC 7 cut(s) 255, 1164, 1424, 1720, 1889, 2206, 2772
BpiI GAAGAC 3 cut(s) 353, 924, 2157
BplI GAGNNNNNCTC 2 cut(s) 1084, 1116
BpmI CTGGAG 2 cut(s) 2220, 2703
Bpu1102I GCTNAGC 1 cut(s) 999
BpuEI CTTGAG 2 cut(s) 478, 626
BsaBI GATNNNNATC 2 cut(s) 564, 921
BsaI GGTCTC 1 cut(s) 2552
BsaWI WCCGGW 2 cut(s) 1122, 1285
BsaXI ACNNNNNCTCC 2 cut(s) 1979, 2009
Bse118I RCCGGY 3 cut(s) 1122, 1210, 2801
Bse1I ACTGG 4 cut(s) 510, 1544, 2067, 2815
Bse21I CCTNAGG 1 cut(s) 380
Bse3DI GCAATG 2 cut(s) 1750, 1957
Bse8I GATNNNNATC 2 cut(s) 564, 921
BseAI TCCGGA 1 cut(s) 1285
BseBI CCWGG 4 cut(s) 127, 690, 2238, 2682
BseGI GGATG 5 cut(s) 1024, 1336, 1711, 2443, 2935
BseJI GATNNNNATC 2 cut(s) 564, 921
BseMI GCAATG 2 cut(s) 1750, 1957
BseMII CTCAG 6 cut(s) 371, 990, 1274, 1319, 1905, 2088
BseNI ACTGG 4 cut(s) 510, 1544, 2067, 2815
BseRI GAGGAG 3 cut(s) 226, 358, 1105
BseSI GKGCMC 2 cut(s) 1702, 1732
BseXI GCAGC 7 cut(s) 632, 850, 1159, 1162, 1454, 2269, 2305
BseYI CCCAGC 1 cut(s) 776
BsgI GTGCAG 2 cut(s) 639, 2379
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 7 cut(s) 131, 910, 1210, 1327, 1659, 2112, 2670
BshNI GGYRCC 2 cut(s) 1727, 2798
BshTI ACCGGT 1 cut(s) 1122
BsiHKAI GWGCWC 4 cut(s) 49, 954, 2376, 2390
BsiSI CCGG 5 cut(s) 1123, 1211, 1286, 2709, 2802
BsiWI CGTACG 1 cut(s) 84
BslFI GGGAC 5 cut(s) 71, 250, 2493, 2886, 2999
BsmAI GTCTC 3 cut(s) 149, 2175, 2552
BsmBI CGTCTC 2 cut(s) 149, 2175
BsmFI GGGAC 5 cut(s) 71, 250, 2493, 2886, 2999
BsmI GAATGC 2 cut(s) 885, 1984
BsnI GGCC 7 cut(s) 131, 910, 1210, 1327, 1659, 2112, 2670
Bso31I GGTCTC 1 cut(s) 2552
Bsp1286I GDGCHC 6 cut(s) 49, 954, 1702, 1732, 2376, 2390
Bsp13I TCCGGA 1 cut(s) 1285
Bsp1407I TGTACA 1 cut(s) 1438
Bsp1720I GCTNAGC 1 cut(s) 999
Bsp19I CCATGG 2 cut(s) 1204, 1660
BspACI CCGC 3 cut(s) 216, 280, 2518
BspANI GGCC 7 cut(s) 131, 910, 1210, 1327, 1659, 2112, 2670
BspCNI CTCAG 6 cut(s) 372, 991, 1273, 1318, 1906, 2089
BspEI TCCGGA 1 cut(s) 1285
BspFNI CGCG 1 cut(s) 280
BspHI TCATGA 1 cut(s) 1366
BspLI GGNNCC 8 cut(s) 909, 1080, 1215, 1299, 1491, 1729, 1825, 2800
BspMAI CTGCAG 1 cut(s) 1149
BspPI GGATC 6 cut(s) 1103, 1176, 1233, 1292, 1305, 2509
BspQI GCTCTTC 3 cut(s) 170, 2125, 2940
BspT107I GGYRCC 2 cut(s) 1727, 2798
BspTI CTTAAG 1 cut(s) 1957
BspTNI GGTCTC 1 cut(s) 2552
BsrBI CCGCTC 1 cut(s) 216
BsrDI GCAATG 2 cut(s) 1750, 1957
BsrFI RCCGGY 3 cut(s) 1122, 1210, 2801
BsrGI TGTACA 1 cut(s) 1438
BsrI ACTGG 4 cut(s) 510, 1544, 2067, 2815
BssAI RCCGGY 3 cut(s) 1122, 1210, 2801
BssT1I CCWWGG 6 cut(s) 1067, 1204, 1660, 2139, 2740, 2959
Bst2UI CCWGG 4 cut(s) 127, 690, 2238, 2682
Bst4CI ACNGT 2 cut(s) 62, 327
BstAFI CTTAAG 1 cut(s) 1957
BstAPI GCANNNNNTGC 1 cut(s) 2216
BstAUI TGTACA 1 cut(s) 1438
BstC8I GCNNGC 7 cut(s) 1449, 1453, 2208, 2664, 2668, 2803, 2866
BstDSI CCRYGG 2 cut(s) 1204, 1660
BstEII GGTNACC 1 cut(s) 1118
BstENI CCTNNNNNAGG 1 cut(s) 1719
BstF5I GGATG 5 cut(s) 1024, 1336, 1711, 2443, 2935
BstFNI CGCG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 625
BstMAI GTCTC 3 cut(s) 149, 2175, 2552
BstMWI GCNNNNNNNGC 3 cut(s) 1752, 2216, 2651
BstNI CCWGG 4 cut(s) 127, 690, 2238, 2682
BstNSI RCATGY 4 cut(s) 1240, 1455, 1746, 2355
BstPI GGTNACC 1 cut(s) 1118
BstSCI CCNGG 4 cut(s) 125, 688, 2236, 2680
BstSFI CTRYAG 3 cut(s) 1145, 1198, 2484
BstSLI GKGCMC 2 cut(s) 1702, 1732
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 7 cut(s) 632, 850, 1159, 1162, 1454, 2269, 2305
BstV2I GAAGAC 3 cut(s) 353, 924, 2157
BstX2I RGATCY 4 cut(s) 1043, 1181, 1297, 2514
BstXI CCANNNNNNTGG 1 cut(s) 1626
BstYI RGATCY 4 cut(s) 1043, 1181, 1297, 2514
Bsu36I CCTNAGG 1 cut(s) 380
BsuRI GGCC 7 cut(s) 131, 910, 1210, 1327, 1659, 2112, 2670
BtgI CCRYGG 2 cut(s) 1204, 1660
BtsCI GGATG 5 cut(s) 1024, 1336, 1711, 2443, 2935
BtsI GCAGTG 1 cut(s) 1142
BtsIMutI CAGTG 3 cut(s) 1142, 2060, 2427
Cac8I GCNNGC 7 cut(s) 1449, 1453, 2208, 2664, 2668, 2803, 2866
CciI TCATGA 1 cut(s) 1366
CfoI GCGC 1 cut(s) 625
Cfr10I RCCGGY 3 cut(s) 1122, 1210, 2801
Cfr13I GGNCC 8 cut(s) 129, 720, 805, 908, 986, 1208, 1541, 2669
Csp6I GTAC 5 cut(s) 76, 85, 522, 1439, 2526
CspAI ACCGGT 1 cut(s) 1122
CviQI GTAC 5 cut(s) 76, 85, 522, 1439, 2526
DraI TTTAAA 2 cut(s) 2566, 2853
DriI GACNNNNNGTC 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 1657
Eam1105I GACNNNNNGTC 1 cut(s) 325
Eco130I CCWWGG 6 cut(s) 1067, 1204, 1660, 2139, 2740, 2959
Eco147I AGGCCT 1 cut(s) 1327
Eco31I GGTCTC 1 cut(s) 2552
Eco32I GATATC 1 cut(s) 1673
Eco47I GGWCC 4 cut(s) 720, 805, 986, 1541
Eco57I CTGAAG 4 cut(s) 81, 897, 2018, 2686
Eco81I CCTNAGG 1 cut(s) 380
Eco91I GGTNACC 1 cut(s) 1118
EcoNI CCTNNNNNAGG 1 cut(s) 1719
EcoO109I RGGNCCY 3 cut(s) 129, 908, 986
EcoO65I GGTNACC 1 cut(s) 1118
EcoRI GAATTC 1 cut(s) 1555
EcoRII CCWGG 4 cut(s) 125, 688, 2236, 2680
EcoRV GATATC 1 cut(s) 1673
EcoT14I CCWWGG 6 cut(s) 1067, 1204, 1660, 2139, 2740, 2959
EcoT22I ATGCAT 1 cut(s) 1242
ErhI CCWWGG 6 cut(s) 1067, 1204, 1660, 2139, 2740, 2959
Esp3I CGTCTC 2 cut(s) 149, 2175
FalI AAGNNNNNCTT 6 cut(s) 1171, 1203, 1312, 1344, 2360, 2392
FaqI GGGAC 5 cut(s) 71, 250, 2493, 2886, 2999
FbaI TGATCA 4 cut(s) 148, 1686, 1921, 2613
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 7 cut(s) 621, 864, 1148, 1151, 1468, 2258, 2294
FokI GGATG 5 cut(s) 1031, 1323, 1698, 2450, 2942
Fsp4HI GCNGC 7 cut(s) 621, 864, 1148, 1151, 1468, 2258, 2294
FspBI CTAG 6 cut(s) 113, 311, 525, 926, 1614, 2642
GlaI GCGC 1 cut(s) 624
GluI GCNGC 7 cut(s) 621, 864, 1148, 1151, 1468, 2258, 2294
GsaI CCCAGC 1 cut(s) 780
GsuI CTGGAG 2 cut(s) 2220, 2703
HaeIII GGCC 7 cut(s) 131, 910, 1210, 1327, 1659, 2112, 2670
HapII CCGG 5 cut(s) 1123, 1211, 1286, 2709, 2802
HhaI GCGC 1 cut(s) 625
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HincII GTYRAC 2 cut(s) 107, 1128
HindII GTYRAC 2 cut(s) 107, 1128
HindIII AAGCTT 1 cut(s) 2660
HpaI GTTAAC 1 cut(s) 1128
HpaII CCGG 5 cut(s) 1123, 1211, 1286, 2709, 2802
HphI GGTGA 5 cut(s) 959, 1130, 1646, 1676, 2235
Hpy166II GTNNAC 8 cut(s) 107, 276, 376, 1128, 1165, 1441, 2243, 2824
Hpy188III TCNNGA 9 cut(s) 113, 152, 400, 701, 926, 1286, 1367, 1786, 1967
Hpy8I GTNNAC 8 cut(s) 107, 276, 376, 1128, 1165, 1441, 2243, 2824
HpyCH4III ACNGT 2 cut(s) 62, 327
HpyCH4IV ACGT 3 cut(s) 1816, 2184, 2319
HpyF10VI GCNNNNNNNGC 3 cut(s) 1752, 2216, 2651
HpySE526I ACGT 3 cut(s) 1816, 2184, 2319
HspAI GCGC 1 cut(s) 623
Kpn2I TCCGGA 1 cut(s) 1285
KroI GCCGGC 1 cut(s) 2801
KroNI GCCGGC 1 cut(s) 2803
Ksp22I TGATCA 4 cut(s) 148, 1686, 1921, 2613
KspAI GTTAAC 1 cut(s) 1128
LguI GCTCTTC 3 cut(s) 170, 2125, 2940
LmnI GCTCC 7 cut(s) 213, 1030, 1810, 1891, 2239, 2254, 2385
Lsp1109I GCAGC 7 cut(s) 632, 850, 1159, 1162, 1454, 2269, 2305
LweI GCATC 7 cut(s) 255, 1164, 1424, 1720, 1889, 2206, 2772
MaeI CTAG 6 cut(s) 113, 311, 525, 926, 1614, 2642
MaeII ACGT 3 cut(s) 1816, 2184, 2319
MaeIII GTNAC 4 cut(s) 1118, 1579, 2729, 2774
MbiI CCGCTC 1 cut(s) 216
MfeI CAATTG 3 cut(s) 672, 1313, 2979
MflI RGATCY 4 cut(s) 1043, 1181, 1297, 2514
MhlI GDGCHC 6 cut(s) 49, 954, 1702, 1732, 2376, 2390
MlsI TGGCCA 1 cut(s) 1659
MluNI TGGCCA 1 cut(s) 1659
MlyI GAGTC 7 cut(s) 76, 359, 734, 938, 1093, 2474, 2930
MmeI TCCRAC 2 cut(s) 1643, 1788
Mox20I TGGCCA 1 cut(s) 1659
Mph1103I ATGCAT 1 cut(s) 1242
MroI TCCGGA 1 cut(s) 1285
MroNI GCCGGC 1 cut(s) 2801
MscI TGGCCA 1 cut(s) 1659
MslI CAYNNNNRTG 3 cut(s) 573, 710, 957
Msp20I TGGCCA 1 cut(s) 1659
MspCI CTTAAG 1 cut(s) 1957
MspI CCGG 5 cut(s) 1123, 1211, 1286, 2709, 2802
MspR9I CCNGG 4 cut(s) 127, 690, 2238, 2682
MunI CAATTG 3 cut(s) 672, 1313, 2979
Mva1269I GAATGC 2 cut(s) 885, 1984
MvaI CCWGG 4 cut(s) 127, 690, 2238, 2682
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 1752, 2216, 2651
NaeI GCCGGC 1 cut(s) 2803
NcoI CCATGG 2 cut(s) 1204, 1660
NgoMIV GCCGGC 1 cut(s) 2801
NlaIV GGNNCC 8 cut(s) 909, 1080, 1215, 1299, 1491, 1729, 1825, 2800
NmeAIII GCCGAG 1 cut(s) 892
NmuCI GTSAC 2 cut(s) 1118, 2729
NsiI ATGCAT 1 cut(s) 1242
NspI RCATGY 4 cut(s) 1240, 1455, 1746, 2355
PaeI GCATGC 1 cut(s) 1455
PagI TCATGA 1 cut(s) 1366
PceI AGGCCT 1 cut(s) 1327
PciSI GCTCTTC 3 cut(s) 170, 2125, 2940
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PctI GAATGC 2 cut(s) 885, 1984
PdiI GCCGGC 1 cut(s) 2803
Pfl23II CGTACG 1 cut(s) 84
PinAI ACCGGT 1 cut(s) 1122
PkrI GCNGC 7 cut(s) 622, 865, 1149, 1152, 1469, 2259, 2295
PleI GAGTC 7 cut(s) 75, 359, 733, 937, 1093, 2474, 2930
PpsI GAGTC 7 cut(s) 75, 359, 733, 937, 1093, 2474, 2930
PpuMI RGGWCCY 1 cut(s) 986
PshBI ATTAAT 1 cut(s) 573
Psp5II RGGWCCY 1 cut(s) 986
Psp6I CCWGG 4 cut(s) 125, 688, 2236, 2680
PspEI GGTNACC 1 cut(s) 1118
PspFI CCCAGC 1 cut(s) 776
PspGI CCWGG 4 cut(s) 125, 688, 2236, 2680
PspLI CGTACG 1 cut(s) 84
PspN4I GGNNCC 8 cut(s) 909, 1080, 1215, 1299, 1491, 1729, 1825, 2800
PspPI GGNCC 8 cut(s) 129, 720, 805, 908, 986, 1208, 1541, 2669
PspPPI RGGWCCY 1 cut(s) 986
PsrI GAACNNNNNNTAC 4 cut(s) 511, 543, 1422, 1454
PstI CTGCAG 1 cut(s) 1149
PsuI RGATCY 4 cut(s) 1043, 1181, 1297, 2514
RsaI GTAC 5 cut(s) 77, 86, 523, 1440, 2527
RsaNI GTAC 5 cut(s) 76, 85, 522, 1439, 2526
RseI CAYNNNNRTG 3 cut(s) 573, 710, 957
SalI GTCGAC 1 cut(s) 105
SapI GCTCTTC 3 cut(s) 170, 2125, 2940
SatI GCNGC 7 cut(s) 621, 864, 1148, 1151, 1468, 2258, 2294
Sau96I GGNCC 8 cut(s) 129, 720, 805, 908, 986, 1208, 1541, 2669
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 7 cut(s) 76, 359, 734, 938, 1093, 2474, 2930
ScrFI CCNGG 4 cut(s) 127, 690, 2238, 2682
SduI GDGCHC 6 cut(s) 49, 954, 1702, 1732, 2376, 2390
SfaNI GCATC 7 cut(s) 255, 1164, 1424, 1720, 1889, 2206, 2772
SfcI CTRYAG 3 cut(s) 1145, 1198, 2484
SinI GGWCC 4 cut(s) 720, 805, 986, 1541
SmiMI CAYNNNNRTG 3 cut(s) 573, 710, 957
SmlI CTYRAG 3 cut(s) 457, 605, 1957
SmoI CTYRAG 3 cut(s) 457, 605, 1957
SpeI ACTAGT 1 cut(s) 524
SphI GCATGC 1 cut(s) 1455
SseBI AGGCCT 1 cut(s) 1327
SsiI CCGC 3 cut(s) 216, 280, 2518
SspMI CTAG 6 cut(s) 113, 311, 525, 926, 1614, 2642
StuI AGGCCT 1 cut(s) 1327
StyD4I CCNGG 4 cut(s) 125, 688, 2236, 2680
StyI CCWWGG 6 cut(s) 1067, 1204, 1660, 2139, 2740, 2959
TaaI ACNGT 2 cut(s) 62, 327
TaiI ACGT 3 cut(s) 1819, 2187, 2322
TaqI TCGA 6 cut(s) 106, 558, 655, 994, 1758, 2576
TatI WGTACW 2 cut(s) 521, 1438
TscAI CASTG 3 cut(s) 1149, 2067, 2427
TseFI GTSAC 2 cut(s) 1118, 2729
TseI GCWGC 7 cut(s) 620, 863, 1147, 1150, 1467, 2257, 2293
Tsp45I GTSAC 2 cut(s) 1118, 2729
TspDTI ATGAA 9 cut(s) 17, 519, 728, 1443, 1726, 2112, 2295, 2433, 3023
TspGWI ACGGA 2 cut(s) 60, 2841
TspRI CASTG 3 cut(s) 1149, 2067, 2427
Vha464I CTTAAG 1 cut(s) 1957
VpaK11BI GGWCC 4 cut(s) 720, 805, 986, 1541
VspI ATTAAT 1 cut(s) 573
XagI CCTNNNNNAGG 1 cut(s) 1719
XapI RAATTY 6 cut(s) 395, 733, 1555, 1781, 1927, 2910
XbaI TCTAGA 2 cut(s) 112, 925
XceI RCATGY 4 cut(s) 1240, 1455, 1746, 2355
XmiI GTMKAC 1 cut(s) 106
XspI CTAG 6 cut(s) 113, 311, 525, 926, 1614, 2642
ZrmI AGTACT 1 cut(s) 523
Zsp2I ATGCAT 1 cut(s) 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.