Rroxscaffold_3G00260510

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008950
Physical Location & Seq
Forward (+)
54929582 .. 54933764
4183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260510.1

Sequence Viewer

Length: 2583 bp
ATGGACTTGAGGCGAGGTAGAGGAAAAGAGAGGGTCTTTGGAGAAAGAAAGGTTGATTCCAGTAGTAGTAGTACTAGTTCATTAAGAAGAGAGAATAAAGAGGTTTTCTATGATAATCATATTAATGTTAGGGAAGGGGTTAGGGGTTTAAGGCTTGAGGAAAGTGGTGCACCGCAGAAAAAGGAGTTTGTTGAAAGATATAGTCGATTATCCGAGTTCCCAATTGATAATAGAATCCCTGGAAATGATCTTGACACGAATATGAATAGGTCCGAGTCTGTAAACTCAAGTGTAGGGGATATTTCAGCCCAATTAAGGTATCTTGCGGGGTCATTGAGATCAAGGGAAAGTATGGACCAGTGGGGTGTTGAAAGAGATCGGTATGAGGGGTTTTATGGAAACATCAGGGTTGCTGCCGAGCGAGGAAGAATGCCAATTTCTTCTTATCCTAATGAGGGGCCTTCAAATTATCATCTAGAGTCTTCTTACGGTCATGGTGAGCACAAGTATGATGTGAATGGAGTTGAAAATTTAGGACCTGATCGAGCTGAGCTTCTTAGGAAAATGGATGAGTTGAAGGAGCAACTTAAAAGATCTTATGATGTGGCAGATAAACCAAGGGATATGGTTCCCCCAGAGAGGAGTAGGACTCCACCTGATCCTTATGGTGACCGGTTAACTTATAGTCTTTCACTGCAGCAGCAATATGTTGTGGACAAGCAGATGCCAAGATCCCCTTACTTGAACCATAGCCATGGGCCGGTTCCTTTTATGGATCATCATAACATGCATACGCAGAACTTTTATCCTCAGAGGAATAACTTGAATGTGATTCCGGAATATGAGGATCCATCTCAGCCACAAATGACAAGGAGGCCTTCCCATCATCCACTCCAATACCCACAACCACAACCTCATGATTACTTTAGGGGGCAACACATGGGTTTCAGCCAGAATCCACTTGCATCATATCCACATGAACTTGTTGTACACTCGCCTGCATGCACTTGTTCAGGCTGCTACAACCAGAATTGGGTGGTTCCACCCCAAGTTCCTCATACTGATTTTGGCAACAGAAGTATTCCAAAAGGTCCAGTTAATTTGAATTCCTATCATCATGTCAATCCTGTTACATACACTCCACATAATTACCCCAGAAATGCTAGTCCAACAAGATGGCAAGGTGATGTTGATTCAGACATTGATGGCTATGGTGAGAGATATCTAGGAAAGATGATCAACAGGAGGGCACAGATTTCCCATCCTTTCCGAGGTGGTGCCCCATTCATTACATGCTTCCATTGCTTCGAGTTGCTGAAACTTCCCAGAAAATTCAAGAAGAGAAGTAAGAATCAGTCAGAGCTACGTTGTGGTTCCTGTTTGACTATTATTTCAGTTGAACTTAATAACAAAAGGCTCATTACATCTGCATCTGCTCCTAAAGAATCCAAGCAATCATCTTCTGAGGTTGATCAAAATTCTAAGGAGGTATTAAAGGGCAATGTCTTAAGTTCTCCTGATTGTCTGAATGCTGATGACACCATCTCCTGCCATGATGATTTAGATAACTCTGGTCAGAACCTTCAGTTGATAGTTGCTGAAGATAATTCACTGGCAGAAGATGAGAGGCTGAACTTGGATAAATCTGAGAAGAGGGAAGGCCATAGCTCTTCATCTTCCATCTCTTCCAAGGAGGAAAAAGACACCCCAGATAGTATGATTATTCAGAGAGACGTTTCTGATTCTGTTGAACAGCTCGCAAAAGATGCCTGTTCTCCAATAGCTCCAGGTTCACCTCTTTGGGAGCAGCCTGATAGTCCTTCCAAACATGAAGTAAGTGAGCAGCCTGATAGTCCTTCCAAACATGACGTAAGCAGAGATGGGAATGGAAATAAGAGTGCATGTATAGACCAAGACAAAGTGCTCTTTAGTAGGAGCACATCTGCACAGAAATCTGTGAAAGATATGTCAGTGGAAACCGAGGTGGATGATTCATACAATGACTATCTCAATACCAACATATCGCAGGACTCTACAGAGGCAAGCAAAGAAGATCGTCCCAAGATCCGCAAGGGCACTGATAACTTCTTGGTTGGTCTCATCAAAAAGAGTTTTAAAGATTCCTCGAAATCTGATCAAATTGTGGAGAGAACTAAGGTTTTGATCAATGGGCAACCTATACCAGATCATCTAGTAAGGAAAGCTGAAAAGCTTGCTGGTCCAATTCAACCTGGAGATTATTGGTATGACTTCAGAGCCGGATTCTGGGGTGTGATGGGTCACTCTTGCCTTGGCATAATTCCTCCATCTATTGAAGAGTTCAGTTACCCGATGCCAACAAATTGTGGTGCCGGCAATACTGGTGTCTATGTAAACGGAAGAGAGCTACATCAGAGAGATTTAGACCTACTTGCAAGCAGGGGGCTGCCAACTACCAGAGAGAGATTTTATATCCTTGAAATTTCTGGGAGAGTTGTGGATGAGGGCTCTGGGGAAGAGCTAAAATCCCTTGGCAGACTTGCCCCAACAATTGAGAAGGTAAAACATGGATTTGGCATGAAAGTCCCCAGAATGGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

860

Amino Acids

97.05

Weight (kDa)

6.32

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_12 PF11331 425 - 468 1.2e-17 EDR4 zinc-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1277, 2348
AccIII TCCGGA 1 cut(s) 835
AciI CCGC 3 cut(s) 173, 326, 2068
AclWI GGATC 6 cut(s) 653, 726, 783, 842, 855, 2059
AcsI RAATTY 5 cut(s) 529, 1105, 1331, 1477, 2460
AcuI CTGAAG 3 cut(s) 1568, 1620, 2236
AfaI GTAC 2 cut(s) 73, 990
AfiI CCNNNNNNNGG 8 cut(s) 315, 455, 639, 760, 1033, 1271, 2265, 2572
AflII CTTAAG 1 cut(s) 1507
AgeI ACCGGT 1 cut(s) 672
AhlI ACTAGT 1 cut(s) 74
AjnI CCWGG 3 cut(s) 238, 1786, 2230
Alw21I GWGCWC 4 cut(s) 172, 504, 1926, 1940
Alw26I GTCTC 2 cut(s) 1725, 2102
Alw44I GTGCAC 1 cut(s) 168
AlwI GGATC 6 cut(s) 653, 726, 783, 842, 855, 2059
Aor13HI TCCGGA 1 cut(s) 835
AoxI GGCC 4 cut(s) 458, 758, 875, 1660
ApaLI GTGCAC 1 cut(s) 168
ApeKI GCWGC 7 cut(s) 413, 697, 700, 1017, 1807, 1843, 2425
ApoI RAATTY 5 cut(s) 529, 1105, 1331, 1477, 2460
AseI ATTAAT 1 cut(s) 123
AsiGI ACCGGT 1 cut(s) 672
AspS9I GGNCC 7 cut(s) 270, 355, 458, 536, 758, 1091, 2219
AsuHPI GGTGA 5 cut(s) 509, 680, 1196, 1226, 1785
AvaII GGWCC 5 cut(s) 270, 355, 536, 1091, 2219
BaeGI GKGCMC 4 cut(s) 172, 1252, 1282, 2078
BamHI GGATCC 1 cut(s) 847
BanI GGYRCC 2 cut(s) 1277, 2348
BanII GRGCYC 1 cut(s) 2489
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 4 cut(s) 172, 504, 1926, 1940
BbvI GCAGC 7 cut(s) 400, 709, 712, 1004, 1819, 1855, 2412
BciT130I CCWGG 3 cut(s) 240, 1788, 2232
BclI TGATCA 4 cut(s) 1236, 1471, 2134, 2163
BcoDI GTCTC 2 cut(s) 1725, 2102
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 5 cut(s) 75, 476, 1164, 1226, 2192
BfmI CTRYAG 2 cut(s) 695, 2034
BfrI CTTAAG 1 cut(s) 1507
BglII AGATCT 1 cut(s) 593
BisI GCNGC 7 cut(s) 414, 698, 701, 1018, 1808, 1844, 2426
BlpI GCTNAGC 1 cut(s) 549
BlsI GCNGC 7 cut(s) 415, 699, 702, 1019, 1809, 1845, 2427
BmcAI AGTACT 1 cut(s) 73
Bme1390I CCNGG 3 cut(s) 240, 1788, 2232
Bme18I GGWCC 5 cut(s) 270, 355, 536, 1091, 2219
BmgT120I GGNCC 7 cut(s) 270, 355, 458, 536, 758, 1091, 2219
BmiI GGNNCC 8 cut(s) 459, 630, 765, 849, 1041, 1279, 1375, 2350
BmrFI CCNGG 3 cut(s) 240, 1788, 2232
BmsI GCATC 5 cut(s) 714, 974, 1439, 1756, 2322
BpiI GAAGAC 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 634, 666
BpmI CTGGAG 2 cut(s) 1770, 2253
Bpu1102I GCTNAGC 1 cut(s) 549
BpuEI CTTGAG 3 cut(s) 28, 176, 271
BsaI GGTCTC 1 cut(s) 2102
BsaJI CCNNGG 8 cut(s) 238, 617, 754, 1270, 1689, 1980, 2290, 2509
BsaWI WCCGGW 2 cut(s) 672, 835
BsaXI ACNNNNNCTCC 4 cut(s) 1123, 1153, 1529, 1559
Bsc4I CCNNNNNNNGG 8 cut(s) 315, 455, 639, 760, 1033, 1271, 2265, 2572
Bse118I RCCGGY 3 cut(s) 672, 760, 2351
Bse1I ACTGG 5 cut(s) 60, 358, 1094, 1617, 2365
Bse3DI GCAATG 2 cut(s) 1300, 1507
BseAI TCCGGA 1 cut(s) 835
BseBI CCWGG 3 cut(s) 240, 1788, 2232
BseDI CCNNGG 8 cut(s) 238, 617, 754, 1270, 1689, 1980, 2290, 2509
BseGI GGATG 5 cut(s) 574, 886, 1261, 1993, 2485
BseLI CCNNNNNNNGG 8 cut(s) 315, 455, 639, 760, 1033, 1271, 2265, 2572
BseMI GCAATG 2 cut(s) 1300, 1507
BseMII CTCAG 5 cut(s) 540, 824, 869, 1455, 1638
BseNI ACTGG 5 cut(s) 60, 358, 1094, 1617, 2365
BseRI GAGGAG 1 cut(s) 655
BseSI GKGCMC 4 cut(s) 172, 1252, 1282, 2078
BseXI GCAGC 7 cut(s) 400, 709, 712, 1004, 1819, 1855, 2412
BsgI GTGCAG 1 cut(s) 1929
BshFI GGCC 4 cut(s) 460, 760, 877, 1662
BshNI GGYRCC 2 cut(s) 1277, 2348
BshTI ACCGGT 1 cut(s) 672
BsiHKAI GWGCWC 4 cut(s) 172, 504, 1926, 1940
BsiSI CCGG 5 cut(s) 673, 761, 836, 2259, 2352
BslFI GGGAC 2 cut(s) 2043, 2549
BslI CCNNNNNNNGG 8 cut(s) 315, 455, 639, 760, 1033, 1271, 2265, 2572
BsmAI GTCTC 2 cut(s) 1725, 2102
BsmBI CGTCTC 1 cut(s) 1725
BsmFI GGGAC 2 cut(s) 2043, 2549
BsmI GAATGC 2 cut(s) 435, 1534
BsnI GGCC 4 cut(s) 460, 760, 877, 1662
Bso31I GGTCTC 1 cut(s) 2102
Bsp1286I GDGCHC 8 cut(s) 172, 504, 1252, 1282, 1926, 1940, 2078, 2489
Bsp13I TCCGGA 1 cut(s) 835
Bsp1407I TGTACA 1 cut(s) 988
Bsp1720I GCTNAGC 1 cut(s) 549
Bsp19I CCATGG 1 cut(s) 754
BspACI CCGC 3 cut(s) 173, 326, 2068
BspANI GGCC 4 cut(s) 460, 760, 877, 1662
BspCNI CTCAG 5 cut(s) 541, 823, 868, 1456, 1639
BspEI TCCGGA 1 cut(s) 835
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 8 cut(s) 459, 630, 765, 849, 1041, 1279, 1375, 2350
BspMAI CTGCAG 1 cut(s) 699
BspPI GGATC 6 cut(s) 653, 726, 783, 842, 855, 2059
BspQI GCTCTTC 2 cut(s) 1675, 2490
BspT107I GGYRCC 2 cut(s) 1277, 2348
BspTI CTTAAG 1 cut(s) 1507
BspTNI GGTCTC 1 cut(s) 2102
BsrDI GCAATG 2 cut(s) 1300, 1507
BsrFI RCCGGY 3 cut(s) 672, 760, 2351
BsrGI TGTACA 1 cut(s) 988
BsrI ACTGG 5 cut(s) 60, 358, 1094, 1617, 2365
BssAI RCCGGY 3 cut(s) 672, 760, 2351
BssECI CCNNGG 8 cut(s) 238, 617, 754, 1270, 1689, 1980, 2290, 2509
BssT1I CCWWGG 5 cut(s) 617, 754, 1689, 2290, 2509
Bst2UI CCWGG 3 cut(s) 240, 1788, 2232
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 8 cut(s) 82, 1334, 1646, 1675, 1690, 2310, 2374, 2490
BstAFI CTTAAG 1 cut(s) 1507
BstAPI GCANNNNNTGC 1 cut(s) 1766
BstAUI TGTACA 1 cut(s) 988
BstC8I GCNNGC 7 cut(s) 999, 1003, 1758, 2044, 2214, 2353, 2416
BstDEI CTNAG 8 cut(s) 549, 557, 810, 855, 1464, 1482, 1647, 2154
BstDSI CCRYGG 1 cut(s) 754
BstEII GGTNACC 1 cut(s) 668
BstENI CCTNNNNNAGG 1 cut(s) 1269
BstF5I GGATG 5 cut(s) 574, 886, 1261, 1993, 2485
BstMAI GTCTC 2 cut(s) 1725, 2102
BstMWI GCNNNNNNNGC 2 cut(s) 1302, 1766
BstNI CCWGG 3 cut(s) 240, 1788, 2232
BstNSI RCATGY 4 cut(s) 790, 1005, 1296, 1905
BstPI GGTNACC 1 cut(s) 668
BstSCI CCNGG 3 cut(s) 238, 1786, 2230
BstSFI CTRYAG 2 cut(s) 695, 2034
BstSLI GKGCMC 4 cut(s) 172, 1252, 1282, 2078
BstV1I GCAGC 7 cut(s) 400, 709, 712, 1004, 1819, 1855, 2412
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 4 cut(s) 593, 731, 847, 2064
BstXI CCANNNNNNTGG 2 cut(s) 755, 1176
BstYI RGATCY 4 cut(s) 593, 731, 847, 2064
BsuRI GGCC 4 cut(s) 460, 760, 877, 1662
BtgI CCRYGG 1 cut(s) 754
BtsCI GGATG 5 cut(s) 574, 886, 1261, 1993, 2485
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 5 cut(s) 365, 692, 1610, 1977, 2076
Cac8I GCNNGC 7 cut(s) 999, 1003, 1758, 2044, 2214, 2353, 2416
CciI TCATGA 1 cut(s) 916
Cfr10I RCCGGY 3 cut(s) 672, 760, 2351
Cfr13I GGNCC 7 cut(s) 270, 355, 458, 536, 758, 1091, 2219
Csp6I GTAC 2 cut(s) 72, 989
CspAI ACCGGT 1 cut(s) 672
CviQI GTAC 2 cut(s) 72, 989
DdeI CTNAG 8 cut(s) 549, 557, 810, 855, 1464, 1482, 1647, 2154
DraI TTTAAA 1 cut(s) 2116
Eam1104I CTCTTC 8 cut(s) 82, 1334, 1646, 1675, 1690, 2310, 2374, 2490
EarI CTCTTC 8 cut(s) 82, 1334, 1646, 1675, 1690, 2310, 2374, 2490
Eco130I CCWWGG 5 cut(s) 617, 754, 1689, 2290, 2509
Eco147I AGGCCT 1 cut(s) 877
Eco24I GRGCYC 1 cut(s) 2489
Eco31I GGTCTC 1 cut(s) 2102
Eco32I GATATC 1 cut(s) 1223
Eco47I GGWCC 5 cut(s) 270, 355, 536, 1091, 2219
Eco57I CTGAAG 3 cut(s) 1568, 1620, 2236
Eco91I GGTNACC 1 cut(s) 668
EcoNI CCTNNNNNAGG 1 cut(s) 1269
EcoO109I RGGNCCY 2 cut(s) 458, 536
EcoO65I GGTNACC 1 cut(s) 668
EcoRI GAATTC 1 cut(s) 1105
EcoRII CCWGG 3 cut(s) 238, 1786, 2230
EcoRV GATATC 1 cut(s) 1223
EcoT14I CCWWGG 5 cut(s) 617, 754, 1689, 2290, 2509
EcoT22I ATGCAT 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 2489
ErhI CCWWGG 5 cut(s) 617, 754, 1689, 2290, 2509
Esp3I CGTCTC 1 cut(s) 1725
FalI AAGNNNNNCTT 4 cut(s) 721, 753, 862, 894
FaqI GGGAC 2 cut(s) 2043, 2549
FauI CCCGC 1 cut(s) 319
FbaI TGATCA 4 cut(s) 1236, 1471, 2134, 2163
Fnu4HI GCNGC 7 cut(s) 414, 698, 701, 1018, 1808, 1844, 2426
FokI GGATG 5 cut(s) 581, 873, 1248, 2000, 2492
FriOI GRGCYC 1 cut(s) 2489
Fsp4HI GCNGC 7 cut(s) 414, 698, 701, 1018, 1808, 1844, 2426
FspBI CTAG 5 cut(s) 75, 476, 1164, 1226, 2192
GluI GCNGC 7 cut(s) 414, 698, 701, 1018, 1808, 1844, 2426
GsuI CTGGAG 2 cut(s) 1770, 2253
HaeIII GGCC 4 cut(s) 460, 760, 877, 1662
HapII CCGG 5 cut(s) 673, 761, 836, 2259, 2352
HincII GTYRAC 1 cut(s) 678
HindII GTYRAC 1 cut(s) 678
HindIII AAGCTT 1 cut(s) 2210
HpaI GTTAAC 1 cut(s) 678
HpaII CCGG 5 cut(s) 673, 761, 836, 2259, 2352
HphI GGTGA 5 cut(s) 509, 680, 1196, 1226, 1785
Hpy166II GTNNAC 7 cut(s) 170, 283, 678, 715, 991, 1793, 2374
Hpy188III TCNNGA 6 cut(s) 251, 476, 836, 917, 1336, 1517
Hpy8I GTNNAC 7 cut(s) 170, 283, 678, 715, 991, 1793, 2374
HpyAV CCTTC 9 cut(s) 128, 471, 571, 888, 1592, 1652, 1830, 1866, 2530
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 3 cut(s) 1366, 1734, 1869
HpyF10VI GCNNNNNNNGC 2 cut(s) 1302, 1766
HpyF3I CTNAG 8 cut(s) 549, 557, 810, 855, 1464, 1482, 1647, 2154
HpySE526I ACGT 3 cut(s) 1366, 1734, 1869
Kpn2I TCCGGA 1 cut(s) 835
KroI GCCGGC 1 cut(s) 2351
KroNI GCCGGC 1 cut(s) 2353
Ksp22I TGATCA 4 cut(s) 1236, 1471, 2134, 2163
KspAI GTTAAC 1 cut(s) 678
LguI GCTCTTC 2 cut(s) 1675, 2490
LmnI GCTCC 5 cut(s) 580, 1441, 1789, 1804, 1935
Lsp1109I GCAGC 7 cut(s) 400, 709, 712, 1004, 1819, 1855, 2412
LweI GCATC 5 cut(s) 714, 974, 1439, 1756, 2322
MaeI CTAG 5 cut(s) 75, 476, 1164, 1226, 2192
MaeII ACGT 3 cut(s) 1366, 1734, 1869
MaeIII GTNAC 4 cut(s) 668, 1129, 2279, 2324
MfeI CAATTG 2 cut(s) 222, 2529
MflI RGATCY 4 cut(s) 593, 731, 847, 2064
MhlI GDGCHC 8 cut(s) 172, 504, 1252, 1282, 1926, 1940, 2078, 2489
MlyI GAGTC 4 cut(s) 284, 488, 643, 2024
MmeI TCCRAC 1 cut(s) 1193
Mph1103I ATGCAT 1 cut(s) 792
MroI TCCGGA 1 cut(s) 835
MroNI GCCGGC 1 cut(s) 2351
MslI CAYNNNNRTG 4 cut(s) 123, 260, 507, 753
MspCI CTTAAG 1 cut(s) 1507
MspI CCGG 5 cut(s) 673, 761, 836, 2259, 2352
MspR9I CCNGG 3 cut(s) 240, 1788, 2232
MunI CAATTG 2 cut(s) 222, 2529
Mva1269I GAATGC 2 cut(s) 435, 1534
MvaI CCWGG 3 cut(s) 240, 1788, 2232
MwoI GCNNNNNNNGC 2 cut(s) 1302, 1766
NaeI GCCGGC 1 cut(s) 2353
NcoI CCATGG 1 cut(s) 754
NgoMIV GCCGGC 1 cut(s) 2351
NlaIV GGNNCC 8 cut(s) 459, 630, 765, 849, 1041, 1279, 1375, 2350
NmeAIII GCCGAG 1 cut(s) 442
NmuCI GTSAC 2 cut(s) 668, 2279
NsiI ATGCAT 1 cut(s) 792
NspI RCATGY 4 cut(s) 790, 1005, 1296, 1905
PaeI GCATGC 1 cut(s) 1005
PagI TCATGA 1 cut(s) 916
PceI AGGCCT 1 cut(s) 877
PciSI GCTCTTC 2 cut(s) 1675, 2490
PctI GAATGC 2 cut(s) 435, 1534
PdiI GCCGGC 1 cut(s) 2353
PinAI ACCGGT 1 cut(s) 672
PkrI GCNGC 7 cut(s) 415, 699, 702, 1019, 1809, 1845, 2427
PleI GAGTC 4 cut(s) 283, 487, 643, 2024
PpsI GAGTC 4 cut(s) 283, 487, 643, 2024
PpuMI RGGWCCY 1 cut(s) 536
PshBI ATTAAT 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 536
Psp6I CCWGG 3 cut(s) 238, 1786, 2230
PspEI GGTNACC 1 cut(s) 668
PspGI CCWGG 3 cut(s) 238, 1786, 2230
PspN4I GGNNCC 8 cut(s) 459, 630, 765, 849, 1041, 1279, 1375, 2350
PspPI GGNCC 7 cut(s) 270, 355, 458, 536, 758, 1091, 2219
PspPPI RGGWCCY 1 cut(s) 536
PsrI GAACNNNNNNTAC 4 cut(s) 61, 93, 972, 1004
PstI CTGCAG 1 cut(s) 699
PsuI RGATCY 4 cut(s) 593, 731, 847, 2064
RsaI GTAC 2 cut(s) 73, 990
RsaNI GTAC 2 cut(s) 72, 989
RseI CAYNNNNRTG 4 cut(s) 123, 260, 507, 753
SapI GCTCTTC 2 cut(s) 1675, 2490
SatI GCNGC 7 cut(s) 414, 698, 701, 1018, 1808, 1844, 2426
Sau96I GGNCC 7 cut(s) 270, 355, 458, 536, 758, 1091, 2219
ScaI AGTACT 1 cut(s) 73
SchI GAGTC 4 cut(s) 284, 488, 643, 2024
ScrFI CCNGG 3 cut(s) 240, 1788, 2232
SduI GDGCHC 8 cut(s) 172, 504, 1252, 1282, 1926, 1940, 2078, 2489
SfaNI GCATC 5 cut(s) 714, 974, 1439, 1756, 2322
SfcI CTRYAG 2 cut(s) 695, 2034
SinI GGWCC 5 cut(s) 270, 355, 536, 1091, 2219
SmiMI CAYNNNNRTG 4 cut(s) 123, 260, 507, 753
SmlI CTYRAG 4 cut(s) 7, 155, 286, 1507
SmoI CTYRAG 4 cut(s) 7, 155, 286, 1507
SpeI ACTAGT 1 cut(s) 74
SphI GCATGC 1 cut(s) 1005
SseBI AGGCCT 1 cut(s) 877
SsiI CCGC 3 cut(s) 173, 326, 2068
SspMI CTAG 5 cut(s) 75, 476, 1164, 1226, 2192
StuI AGGCCT 1 cut(s) 877
StyD4I CCNGG 3 cut(s) 238, 1786, 2230
StyI CCWWGG 5 cut(s) 617, 754, 1689, 2290, 2509
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 3 cut(s) 1369, 1737, 1872
TaqI TCGA 4 cut(s) 205, 544, 1308, 2126
TatI WGTACW 2 cut(s) 71, 988
TscAI CASTG 5 cut(s) 365, 699, 1617, 1977, 2083
TseFI GTSAC 2 cut(s) 668, 2279
TseI GCWGC 7 cut(s) 413, 697, 700, 1017, 1807, 1843, 2425
Tsp45I GTSAC 2 cut(s) 668, 2279
TspDTI ATGAA 8 cut(s) 69, 278, 993, 1276, 1662, 1845, 1983, 2573
TspGWI ACGGA 1 cut(s) 2391
TspRI CASTG 5 cut(s) 365, 699, 1617, 1977, 2083
Vha464I CTTAAG 1 cut(s) 1507
VneI GTGCAC 1 cut(s) 168
VpaK11BI GGWCC 5 cut(s) 270, 355, 536, 1091, 2219
VspI ATTAAT 1 cut(s) 123
XagI CCTNNNNNAGG 1 cut(s) 1269
XapI RAATTY 5 cut(s) 529, 1105, 1331, 1477, 2460
XbaI TCTAGA 1 cut(s) 475
XceI RCATGY 4 cut(s) 790, 1005, 1296, 1905
XspI CTAG 5 cut(s) 75, 476, 1164, 1226, 2192
ZrmI AGTACT 1 cut(s) 73
Zsp2I ATGCAT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.