Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002591

Physical Location & Seq

Genomic Coordinates Reverse (-)

1659521 .. 1661203

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0023100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGACCGTGATATGGTTTCTTTTCGAGGTAGTCGAGTACAATTTCGTCACCCTCCTCTGTCACGCCTCCATTACCACTATGCTTGTTATCTTCATTTGGCGCATGGTTGCAGAAATCTTCGGATTGACACCTCCTAGAATACCTGAAATTATATTAGATGACTCTACATTCAGAGATGTAGCTTCCACAGTCCATAAAAAGTTCAACCGTTTCTTGTCAAAGCTCATTGACAGTGCTTGTGGAAAAGACCTACCATTCTTCATCTTGGCAATCGTTTCTCTATACATTTTGTCTGTGATTGGAACCTATTTCAGCTTTCTGAATCTTCTTTACTTGGGGTTCCTGTGTCTGGAAACTCTGCCTGTTCTGTACGAGAAATTTGAGGACGACGTTGATCATCTAGCTGGAAAAGTTTCCCGTGAAATAAAGAGATCATACAGAAAGTTTGAGGCTCAGTTCCTCAACAAAATCCCAAGAGGCCCAGTCAAAGACAAGAAAATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

168

Amino Acids

19.55

Weight (kDa)

8.74

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	2 - 138	7.6e-41	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01100 AT4G01100 AT4G01100
fragaria_vesca	FvH4_5g04080 FvH4_7g16030 FvH4_7g16030 FvH4_7g16030
malus_domestica	MD06G1102400.v1.1 MD07G1145800.v1.1 MD14G1121600.v1.1
prunus_persica	Prupe.2G184000_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1
pyrus_communis	pycom01g10560 pycom06g09720 pycom07g14500
rosa_chinensis	RchiOBHm_Chr1g0358961 RchiOBHm_Chr7g0195421
rosa_laevigata	RLG00000004122 RLG00000027913
rosa_multiflora	Rmu_co7977584.1_g000001 Rmu_sc0008757.1_g000008 Rmu_sc0020160.1_g000001 Rmu_sc0037681.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260500 Rroxscaffold_4G00297510
rosa_rugosa	Rorug01G0266400 Rorug01G0266500 Rorug07G0023100
rosa_samantha	Rh1AG280000 Rh1BG246800 Rh1CG264400 Rh1DG275200 Rh7AG150600 Rh7BG152000 Rh7CG155800 Rh7DG151600
rosa_wichuraiana	Rw1G024890 Rw7G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	377
AfaI	GTAC	2 cut(s)	38, 371
AfiI	CCNNNNNNNGG	2 cut(s)	12, 349
AgsI	TTSAA	1 cut(s)	205
AluBI	AGCT	4 cut(s)	182, 223, 315, 404
AluI	AGCT	4 cut(s)	182, 223, 315, 404
AoxI	GGCC	1 cut(s)	478
ApoI	RAATTY	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	40
BclI	TGATCA	1 cut(s)	394
BfaI	CTAG	2 cut(s)	135, 401
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	304, 341
BmrI	ACTGGG	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 349
Bse1I	ACTGG	1 cut(s)	482
BseLI	CCNNNNNNNGG	2 cut(s)	12, 349
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	480
BslI	CCNNNNNNNGG	2 cut(s)	12, 349
BsnI	GGCC	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	394, 431
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	304, 341
BsrI	ACTGG	1 cut(s)	482
BssMI	GATC	2 cut(s)	394, 431
Bst4CI	ACNGT	4 cut(s)	7, 190, 209, 233
BstDEI	CTNAG	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	397, 434
BstMBI	GATC	2 cut(s)	394, 431
BsuRI	GGCC	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	238
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	37, 370
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	6 cut(s)	182, 223, 315, 404, 452, 480
CviKI_1	RGCY	6 cut(s)	182, 223, 315, 404, 452, 480
CviQI	GTAC	2 cut(s)	37, 370
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	2 cut(s)	396, 433
DpnII	GATC	2 cut(s)	394, 431
FaeI	CATG	1 cut(s)	106
FaiI	YATR	7 cut(s)	13, 80, 104, 152, 195, 283, 436
FatI	CATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	394
FspBI	CTAG	2 cut(s)	135, 401
GlaI	GCGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	161, 322
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	4 cut(s)	122, 173, 321, 503
Hpy188III	TCNNGA	1 cut(s)	350
Hpy99I	CGWCG	1 cut(s)	392
HpyCH4III	ACNGT	4 cut(s)	7, 190, 209, 233
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	394, 431
LpnPI	CCDG	6 cut(s)	156, 335, 356, 375, 390, 495
MaeI	CTAG	2 cut(s)	135, 401
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	46, 59
MalI	GATC	2 cut(s)	396, 433
MboI	GATC	2 cut(s)	394, 431
MboII	GAAGA	4 cut(s)	82, 109, 250, 317
MluCI	AATT	3 cut(s)	40, 147, 377
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	9 cut(s)	19, 62, 65, 76, 141, 376, 442, 470, 470
MroXI	GAANNNNTTC	1 cut(s)	412
NdeII	GATC	2 cut(s)	394, 431
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	2 cut(s)	304, 341
NmuCI	GTSAC	2 cut(s)	46, 59
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	304, 341
PspPI	GGNCC	1 cut(s)	479
RsaI	GTAC	2 cut(s)	38, 371
RsaNI	GTAC	2 cut(s)	37, 370
Sau3AI	GATC	2 cut(s)	394, 431
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	155
Sse9I	AATT	3 cut(s)	40, 147, 377
SspMI	CTAG	2 cut(s)	135, 401
TaaI	ACNGT	4 cut(s)	7, 190, 209, 233
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	2 cut(s)	24, 33
TasI	AATT	3 cut(s)	40, 147, 377
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	322
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	46, 59
Tsp45I	GTSAC	2 cut(s)	46, 59
TspDTI	ATGAA	2 cut(s)	82, 250
TspRI	CASTG	1 cut(s)	238
XapI	RAATTY	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	2 cut(s)	135, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.