FvH4_5g04080

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
2440826 .. 2444454
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04080.t1

Sequence Viewer

Length: 1077 bp
ATGTCGTCGGAAGACGTCGCCGGGAAGAGGACGAGCGAGACGGCGGTTTCGACGATTGTGAACCTGGCGGAGGAGGCGAAGCTCGCCAGCGAAGGAGTCAAGGCGCCTACCCAGGCCGCGCTCCTTAGCATCGCAAAGTCTCTCGTCGCCGGAGGAGTCGCCGGAGGAGTGTCGAGAACTGCTGTTGCTCCTTTGGAAAGACTGAAGATTTTGCTCCAGGTTCAAAATCCTCATAGTATCAAGTACAATGGGACAGTTCAGGGCTTGAAGTATATATGGAGAAGTGAGGGTTTCAGAGGCTTGTTTAAAGGCAATGGAACTAATTGTGCTCGCATAGTCCCAAATTCAGCAGTCAAGTTCTTTAGCTATGAGGAGGCATCCAGGGGAATCCTATGGTTTTATCGACAGCAAACTGGAGATGAAAATGCTCAACTCACACCTCTTTTGCGCCTCGGAGCTGGTGCATGTGCTGGAATTATTGCAATGTCAGCAACTTACCCGTTGGACTTGGTACGAGGGCGGCTAACTGTCCAGACGGAAAACTCTCCTCGGCAGTATAGGGGAATATTTCATGCTCTTTCAACTGTCTTTCGGGAAGAGGGACCTAGAGCTTTGTACAAAGGCTGGTTACCTTCTGTCATTGGAGTTATACCATATGTTGGTCTAAATTTTGCCGTTTATGAATCTCTGAAAGATTGGTTGATCAAAACTAGACCTTTCGGACTAGTTCAGGACTCTGACTTGAGTATAACAACAAGGCTTGCATGTGGGGCTGCAGCTGGAACTGTTGGCCAGACGGTTGCTTACCCTCTTGATGTCGTTCGGCGAAGAATGCAGATGGTAGGCTGGAAGGACGCGGCTTCGGTTGTCACTGGGGATGGGAAGAGCAAGGCAGCTATTGAATATGCTGGTATGGTTGATACATTCAGGAAAACAGTTCGTCATGAGGGGTTTGGAGCACTGTACAAGGGTTTAGTACCCAATTCTGTTAAGGTGGTGCCTTCCATAGCGATTGCCTTTGTCACTTATGAGGTAGTGAAGGATGTTCTTGGAGTCGAGATGAGAATATCTGATTAA

Protein Analysis

359

Amino Acids

38.64

Weight (kDa)

9.56

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 43 - 128 1.8e-24 Mitochondrial carrier protein
Mito_carr PF00153 145 - 236 5.3e-28 Mitochondrial carrier protein
Mito_carr PF00153 247 - 350 2.4e-25 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
AccB1I GGYRCC 2 cut(s) 103, 997
AccB7I CCANNNNNTGG 1 cut(s) 659
AccII CGCG 2 cut(s) 119, 857
AciI CCGC 5 cut(s) 44, 68, 117, 520, 857
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 2 cut(s) 343, 667
AcuI CTGAAG 1 cut(s) 224
AcyI GRCGYC 2 cut(s) 15, 104
AfaI GTAC 5 cut(s) 245, 513, 617, 965, 978
AfiI CCNNNNNNNGG 3 cut(s) 27, 70, 659
AgsI TTSAA 4 cut(s) 224, 268, 582, 902
AhlI ACTAGT 1 cut(s) 724
AjnI CCWGG 4 cut(s) 63, 111, 216, 380
AluBI AGCT 6 cut(s) 82, 366, 458, 611, 779, 896
AluI AGCT 6 cut(s) 82, 366, 458, 611, 779, 896
Alw21I GWGCWC 2 cut(s) 331, 961
Alw26I GTCTC 2 cut(s) 32, 144
AoxI GGCC 2 cut(s) 114, 790
ApeKI GCWGC 3 cut(s) 773, 776, 893
ApoI RAATTY 2 cut(s) 343, 667
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AspLEI GCGC 3 cut(s) 106, 121, 450
AspS9I GGNCC 1 cut(s) 602
AsuC2I CCSGG 1 cut(s) 22
AvaII GGWCC 1 cut(s) 602
BalI TGGCCA 1 cut(s) 792
BanI GGYRCC 2 cut(s) 103, 997
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 331, 961
BbvI GCAGC 3 cut(s) 760, 788, 905
BccI CCATC 2 cut(s) 832, 872
BceAI ACGGC 2 cut(s) 57, 659
BciT130I CCWGG 4 cut(s) 65, 113, 218, 382
BclI TGATCA 1 cut(s) 702
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 32, 144
BcuI ACTAGT 1 cut(s) 724
BfaI CTAG 3 cut(s) 606, 711, 725
BfmI CTRYAG 1 cut(s) 774
BfoI RGCGCY 1 cut(s) 107
BisI GCNGC 6 cut(s) 117, 521, 774, 777, 858, 894
BlsI GCNGC 6 cut(s) 118, 522, 775, 778, 859, 895
Bme1390I CCNGG 5 cut(s) 22, 65, 113, 218, 382
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 3 cut(s) 105, 603, 999
BmrFI CCNGG 5 cut(s) 22, 65, 113, 218, 382
BmrI ACTGGG 1 cut(s) 882
BmsI GCATC 2 cut(s) 138, 386
BmuI ACTGGG 1 cut(s) 882
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 200, 435
Bpu10I CCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 763
BpuMI CCSGG 1 cut(s) 22
BsaHI GRCGYC 2 cut(s) 15, 104
BsaJI CCNNGG 4 cut(s) 111, 381, 451, 548
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 70, 659
Bse1I ACTGG 2 cut(s) 418, 877
Bse3DI GCAATG 2 cut(s) 319, 489
BseBI CCWGG 4 cut(s) 65, 113, 218, 382
BseDI CCNNGG 4 cut(s) 111, 381, 451, 548
BseGI GGATG 3 cut(s) 377, 883, 1048
BseLI CCNNNNNNNGG 3 cut(s) 27, 70, 659
BseMI GCAATG 2 cut(s) 319, 489
BseNI ACTGG 2 cut(s) 418, 877
BseRI GAGGAG 5 cut(s) 86, 168, 180, 386, 537
BseXI GCAGC 3 cut(s) 760, 788, 905
Bsh1236I CGCG 2 cut(s) 119, 857
BshFI GGCC 2 cut(s) 116, 792
BshNI GGYRCC 2 cut(s) 103, 997
BsiHKAI GWGCWC 2 cut(s) 331, 961
BsiSI CCGG 3 cut(s) 21, 150, 162
BslFI GGGAC 3 cut(s) 265, 323, 615
BslI CCNNNNNNNGG 3 cut(s) 27, 70, 659
BsmAI GTCTC 2 cut(s) 32, 144
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 3 cut(s) 265, 323, 615
BsmI GAATGC 1 cut(s) 837
BsnI GGCC 2 cut(s) 116, 792
Bsp1286I GDGCHC 2 cut(s) 331, 961
Bsp1407I TGTACA 2 cut(s) 615, 963
Bsp143I GATC 1 cut(s) 702
BspACI CCGC 5 cut(s) 44, 68, 117, 520, 857
BspANI GGCC 2 cut(s) 116, 792
BspFNI CGCG 2 cut(s) 119, 857
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 3 cut(s) 105, 603, 999
BspMAI CTGCAG 1 cut(s) 778
BspQI GCTCTTC 1 cut(s) 878
BspT107I GGYRCC 2 cut(s) 103, 997
BsrDI GCAATG 2 cut(s) 319, 489
BsrGI TGTACA 2 cut(s) 615, 963
BsrI ACTGG 2 cut(s) 418, 877
BssECI CCNNGG 4 cut(s) 111, 381, 451, 548
BssMI GATC 1 cut(s) 702
BssNI GRCGYC 2 cut(s) 15, 104
Bst2UI CCWGG 4 cut(s) 65, 113, 218, 382
Bst4CI ACNGT 7 cut(s) 256, 529, 586, 787, 799, 937, 963
Bst6I CTCTTC 3 cut(s) 20, 591, 878
BstACI GRCGYC 2 cut(s) 15, 104
BstAUI TGTACA 2 cut(s) 615, 963
BstC8I GCNNGC 4 cut(s) 84, 88, 331, 762
BstDEI CTNAG 1 cut(s) 125
BstEII GGTNACC 1 cut(s) 627
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 3 cut(s) 377, 883, 1048
BstFNI CGCG 2 cut(s) 119, 857
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 3 cut(s) 106, 121, 450
BstKTI GATC 1 cut(s) 705
BstMAI GTCTC 2 cut(s) 32, 144
BstMBI GATC 1 cut(s) 702
BstMWI GCNNNNNNNGC 5 cut(s) 74, 83, 488, 770, 832
BstNI CCWGG 4 cut(s) 65, 113, 218, 382
BstNSI RCATGY 2 cut(s) 468, 768
BstPI GGTNACC 1 cut(s) 627
BstSCI CCNGG 5 cut(s) 20, 63, 111, 216, 380
BstSFI CTRYAG 1 cut(s) 774
BstUI CGCG 2 cut(s) 119, 857
BstV1I GCAGC 3 cut(s) 760, 788, 905
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 2 cut(s) 116, 792
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 3 cut(s) 377, 883, 1048
BtsIMutI CAGTG 2 cut(s) 870, 959
Cac8I GCNNGC 4 cut(s) 84, 88, 331, 762
CciI TCATGA 1 cut(s) 943
CfoI GCGC 3 cut(s) 106, 121, 450
Cfr13I GGNCC 1 cut(s) 602
CseI GACGC 1 cut(s) 863
Csp6I GTAC 5 cut(s) 244, 512, 616, 964, 977
CviAII CATG 4 cut(s) 465, 572, 765, 944
CviQI GTAC 5 cut(s) 244, 512, 616, 964, 977
DdeI CTNAG 1 cut(s) 125
DinI GGCGCC 1 cut(s) 105
DpnI GATC 1 cut(s) 704
DpnII GATC 1 cut(s) 702
DraI TTTAAA 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 790
Eam1104I CTCTTC 3 cut(s) 20, 591, 878
EarI CTCTTC 3 cut(s) 20, 591, 878
EciI GGCGGA 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 602
Eco57I CTGAAG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 627
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 602
EcoO65I GGTNACC 1 cut(s) 627
EcoRII CCWGG 4 cut(s) 63, 111, 216, 380
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 4 cut(s) 468, 575, 768, 947
FaqI GGGAC 3 cut(s) 265, 323, 615
FatI CATG 4 cut(s) 464, 571, 764, 943
FauNDI CATATG 1 cut(s) 655
FbaI TGATCA 1 cut(s) 702
Fnu4HI GCNGC 6 cut(s) 117, 521, 774, 777, 858, 894
FokI GGATG 3 cut(s) 364, 890, 1055
Fsp4HI GCNGC 6 cut(s) 117, 521, 774, 777, 858, 894
FspBI CTAG 3 cut(s) 606, 711, 725
GlaI GCGC 3 cut(s) 105, 120, 449
GluI GCNGC 6 cut(s) 117, 521, 774, 777, 858, 894
GsuI CTGGAG 2 cut(s) 200, 435
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 2 cut(s) 116, 792
HapII CCGG 3 cut(s) 21, 150, 162
HgaI GACGC 1 cut(s) 863
HhaI GCGC 3 cut(s) 106, 121, 450
Hin1I GRCGYC 2 cut(s) 15, 104
Hin1II CATG 4 cut(s) 468, 575, 768, 947
Hin6I GCGC 3 cut(s) 104, 119, 448
HinP1I GCGC 3 cut(s) 104, 119, 448
HinfI GANTC 6 cut(s) 96, 156, 387, 683, 734, 1053
HpaII CCGG 3 cut(s) 21, 150, 162
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 7 cut(s) 10, 296, 455, 690, 722, 739, 1072
Hpy188III TCNNGA 8 cut(s) 174, 532, 593, 731, 812, 928, 944, 1057
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 4 cut(s) 10, 20, 55, 149
HpyAV CCTTC 5 cut(s) 86, 642, 844, 1011, 1033
HpyCH4III ACNGT 7 cut(s) 256, 529, 586, 787, 799, 937, 963
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 5 cut(s) 464, 482, 764, 776, 835
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 83, 488, 770, 832
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 2 cut(s) 15, 104
Hsp92II CATG 4 cut(s) 468, 575, 768, 947
HspAI GCGC 3 cut(s) 104, 119, 448
KasI GGCGCC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 702
Kzo9I GATC 1 cut(s) 702
LguI GCTCTTC 1 cut(s) 878
LmnI GCTCC 5 cut(s) 126, 193, 219, 455, 956
Lsp1109I GCAGC 3 cut(s) 760, 788, 905
LweI GCATC 2 cut(s) 138, 386
MaeI CTAG 3 cut(s) 606, 711, 725
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 3 cut(s) 627, 868, 1021
MalI GATC 1 cut(s) 704
MboI GATC 1 cut(s) 702
MboII GAAGA 6 cut(s) 23, 37, 217, 608, 840, 895
MhlI GDGCHC 2 cut(s) 331, 961
MlsI TGGCCA 1 cut(s) 792
MluCI AATT 5 cut(s) 322, 343, 474, 667, 982
MluNI TGGCCA 1 cut(s) 792
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 4 cut(s) 105, 165, 728, 1062
MmeI TCCRAC 1 cut(s) 483
Mox20I TGGCCA 1 cut(s) 792
MscI TGGCCA 1 cut(s) 792
MseI TTAA 3 cut(s) 306, 990, 1075
Msp20I TGGCCA 1 cut(s) 792
MspA1I CMGCKG 1 cut(s) 779
MspI CCGG 3 cut(s) 21, 150, 162
MspR9I CCNGG 5 cut(s) 22, 65, 113, 218, 382
Mva1269I GAATGC 1 cut(s) 837
MvaI CCWGG 4 cut(s) 65, 113, 218, 382
MvnI CGCG 2 cut(s) 119, 857
MwoI GCNNNNNNNGC 5 cut(s) 74, 83, 488, 770, 832
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 1 cut(s) 22
NdeI CATATG 1 cut(s) 655
NdeII GATC 1 cut(s) 702
NlaIII CATG 4 cut(s) 468, 575, 768, 947
NlaIV GGNNCC 3 cut(s) 105, 603, 999
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 2 cut(s) 868, 1021
NspI RCATGY 2 cut(s) 468, 768
PagI TCATGA 1 cut(s) 943
PciSI GCTCTTC 1 cut(s) 878
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PctI GAATGC 1 cut(s) 837
PfeI GAWTC 2 cut(s) 387, 683
PflMI CCANNNNNTGG 1 cut(s) 659
PkrI GCNGC 6 cut(s) 118, 522, 775, 778, 859, 895
PleI GAGTC 4 cut(s) 104, 164, 728, 1061
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 4 cut(s) 104, 164, 728, 1061
PpuMI RGGWCCY 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 4 cut(s) 63, 111, 216, 380
PspEI GGTNACC 1 cut(s) 627
PspGI CCWGG 4 cut(s) 63, 111, 216, 380
PspN4I GGNNCC 3 cut(s) 105, 603, 999
PspPI GGNCC 1 cut(s) 602
PspPPI RGGWCCY 1 cut(s) 602
PstI CTGCAG 1 cut(s) 778
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 5 cut(s) 245, 513, 617, 965, 978
RsaNI GTAC 5 cut(s) 244, 512, 616, 964, 977
SapI GCTCTTC 1 cut(s) 878
SaqAI TTAA 3 cut(s) 306, 990, 1075
SatI GCNGC 6 cut(s) 117, 521, 774, 777, 858, 894
Sau3AI GATC 1 cut(s) 702
Sau96I GGNCC 1 cut(s) 602
SchI GAGTC 4 cut(s) 105, 165, 728, 1062
ScrFI CCNGG 5 cut(s) 22, 65, 113, 218, 382
SduI GDGCHC 2 cut(s) 331, 961
SfaNI GCATC 2 cut(s) 138, 386
SfcI CTRYAG 1 cut(s) 774
SfoI GGCGCC 1 cut(s) 105
SinI GGWCC 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 742
SmoI CTYRAG 1 cut(s) 742
SpeI ACTAGT 1 cut(s) 724
Sse9I AATT 5 cut(s) 322, 343, 474, 667, 982
SsiI CCGC 5 cut(s) 44, 68, 117, 520, 857
SspDI GGCGCC 1 cut(s) 103
SspI AATATT 1 cut(s) 567
SspMI CTAG 3 cut(s) 606, 711, 725
StyD4I CCNGG 5 cut(s) 20, 63, 111, 216, 380
TaaI ACNGT 7 cut(s) 256, 529, 586, 787, 799, 937, 963
TaiI ACGT 1 cut(s) 18
TaqI TCGA 4 cut(s) 50, 173, 403, 1056
TasI AATT 5 cut(s) 322, 343, 474, 667, 982
TatI WGTACW 3 cut(s) 243, 615, 963
TauI GCSGC 3 cut(s) 119, 523, 860
TfiI GAWTC 2 cut(s) 387, 683
Tru1I TTAA 3 cut(s) 306, 990, 1075
Tru9I TTAA 3 cut(s) 306, 990, 1075
TscAI CASTG 2 cut(s) 877, 966
TseFI GTSAC 2 cut(s) 868, 1021
TseI GCWGC 3 cut(s) 773, 776, 893
Tsp45I GTSAC 2 cut(s) 868, 1021
TspDTI ATGAA 3 cut(s) 435, 560, 696
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 2 cut(s) 877, 966
Van91I CCANNNNNTGG 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 602
XagI CCTNNNNNAGG 1 cut(s) 68
XapI RAATTY 2 cut(s) 343, 667
XceI RCATGY 2 cut(s) 468, 768
XspI CTAG 3 cut(s) 606, 711, 725
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.