Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7977584.1

Orthogroup ID

OG0002591

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 371

Gene Structure 371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7977584.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 371 bp

tgttttgtttacagataccatatgttggtctcaattttgccgtttatgaatctctgaaagattggttgatcaaaactagacctttcagactagttcaagacactgagttgagtataactacaaagcttgcatgtggggctgcagctggaactgttggccagacggttgcttaccctcttgatgtcgttcggcgaagaatgcagatggtaggctggaagaatgccgcttcggttgtcactggggatgggaagagcaaagcagcccttgaatatactggtatggttgatacattcaggaaaacagttcgtcatgaggggtttagggcactgtacaagggtttggtccccaattctgttaaggtcagtatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

122

Amino Acids

13.49

Weight (kDa)

9.78

Isoelectric Point (pI)

24.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01100 AT4G01100 AT4G01100
fragaria_vesca	FvH4_5g04080 FvH4_7g16030 FvH4_7g16030 FvH4_7g16030
malus_domestica	MD06G1102400.v1.1 MD07G1145800.v1.1 MD14G1121600.v1.1
prunus_persica	Prupe.2G184000_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1
pyrus_communis	pycom01g10560 pycom06g09720 pycom07g14500
rosa_chinensis	RchiOBHm_Chr1g0358961 RchiOBHm_Chr7g0195421
rosa_laevigata	RLG00000004122 RLG00000027913
rosa_multiflora	Rmu_co7977584.1_g000001 Rmu_sc0008757.1_g000008 Rmu_sc0020160.1_g000001 Rmu_sc0037681.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260500 Rroxscaffold_4G00297510
rosa_rugosa	Rorug01G0266400 Rorug01G0266500 Rorug07G0023100
rosa_samantha	Rh1AG280000 Rh1BG246800 Rh1CG264400 Rh1DG275200 Rh7AG150600 Rh7BG152000 Rh7CG155800 Rh7DG151600
rosa_wichuraiana	Rw1G024890 Rw7G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	97, 268
AhlI	ACTAGT	1 cut(s)	90
AluBI	AGCT	2 cut(s)	126, 145
AluI	AGCT	2 cut(s)	126, 145
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	3 cut(s)	139, 142, 259
AspS9I	GGNCC	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	327
BalI	TGGCCA	1 cut(s)	158
BbvI	GCAGC	3 cut(s)	126, 154, 271
BccI	CCATC	2 cut(s)	198, 238
BceAI	ACGGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	34
BcuI	ACTAGT	1 cut(s)	90
BfaI	CTAG	2 cut(s)	77, 91
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	4 cut(s)	140, 143, 224, 260
BlsI	GCNGC	4 cut(s)	141, 144, 225, 261
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	344
BmrI	ACTGGG	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	243, 279
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	243, 279
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	3 cut(s)	126, 154, 271
BshFI	GGCC	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	2 cut(s)	203, 225
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp1407I	TGTACA	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	68
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	344
BspMAI	CTGCAG	1 cut(s)	144
BspQI	GCTCTTC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	243, 279
BssMI	GATC	1 cut(s)	68
Bst4CI	ACNGT	4 cut(s)	153, 165, 303, 329
Bst6I	CTCTTC	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	249
BstKTI	GATC	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 198
BstNSI	RCATGY	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	126, 154, 271
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	3 cut(s)	101, 236, 325
Cac8I	GCNNGC	1 cut(s)	128
CciI	TCATGA	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	2 cut(s)	131, 310
CviJI	RGCY	6 cut(s)	126, 139, 145, 158, 212, 262
CviKI_1	RGCY	6 cut(s)	126, 139, 145, 158, 212, 262
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	342
FaeI	CATG	2 cut(s)	134, 313
FaiI	YATR	8 cut(s)	21, 23, 47, 115, 132, 272, 280, 311
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	2 cut(s)	130, 309
FauNDI	CATATG	1 cut(s)	21
FbaI	TGATCA	1 cut(s)	68
Fnu4HI	GCNGC	4 cut(s)	140, 143, 224, 260
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	4 cut(s)	140, 143, 224, 260
FspBI	CTAG	2 cut(s)	77, 91
GluI	GCNGC	4 cut(s)	140, 143, 224, 260
HaeIII	GGCC	1 cut(s)	158
Hin1II	CATG	2 cut(s)	134, 313
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	56, 88
Hpy188III	TCNNGA	4 cut(s)	97, 178, 294, 310
Hpy8I	GTNNAC	1 cut(s)	10
HpyCH4III	ACNGT	4 cut(s)	153, 165, 303, 329
HpyCH4V	TGCA	3 cut(s)	130, 142, 201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 198
HpyF3I	CTNAG	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	134, 313
Ksp22I	TGATCA	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	68
LguI	GCTCTTC	1 cut(s)	244
LpnPI	CCDG	6 cut(s)	131, 172, 198, 224, 260, 279
Lsp1109I	GCAGC	3 cut(s)	126, 154, 271
MaeI	CTAG	2 cut(s)	77, 91
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	3 cut(s)	206, 228, 261
MhlI	GDGCHC	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	2 cut(s)	33, 348
MluNI	TGGCCA	1 cut(s)	158
MnlI	CCTC	2 cut(s)	185, 306
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	2 cut(s)	356, 369
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	145
Mva1269I	GAATGC	2 cut(s)	203, 225
MwoI	GCNNNNNNNGC	2 cut(s)	136, 198
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	1 cut(s)	68
NlaIII	CATG	2 cut(s)	134, 313
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	134
PagI	TCATGA	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	244
PctI	GAATGC	2 cut(s)	203, 225
PfeI	GAWTC	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	141, 144, 225, 261
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	356, 369
SatI	GCNGC	4 cut(s)	140, 143, 224, 260
Sau3AI	GATC	1 cut(s)	68
Sau96I	GGNCC	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	4 cut(s)	84, 128, 147, 362
SfcI	CTRYAG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	342
SpeI	ACTAGT	1 cut(s)	90
Sse9I	AATT	2 cut(s)	33, 348
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	2 cut(s)	77, 91
TaaI	ACNGT	4 cut(s)	153, 165, 303, 329
TasI	AATT	2 cut(s)	33, 348
TatI	WGTACW	1 cut(s)	329
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	356, 369
Tru9I	TTAA	2 cut(s)	356, 369
TscAI	CASTG	3 cut(s)	108, 243, 332
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	3 cut(s)	139, 142, 259
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	62
TspRI	CASTG	3 cut(s)	108, 243, 332
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	342
XceI	RCATGY	1 cut(s)	134
XspI	CTAG	2 cut(s)	77, 91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.