Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002591

Physical Location & Seq

Genomic Coordinates Forward (+)

477141 .. 480028

Gene Structure 2888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCATCAGAGGATGTGAAAAGAACAGAATCAGCAGCTGTGTCAACGATCGTAAATCTGGCGGAGGAAGCGAGGGAAGGAGTCAAAGCTCCGAGTTATGCTTTTAAAAGCATCTGCAAGTCTCTTTTTGCCGGTGGTGTCGCTGGTGGAGTGTCACGAACTGCTGTTGCACCTCTGGAAAGGATGAAGATATTACTTCAGGTCCAAAATCCGCATAATATAAAGTACAGTGGGACAGTCCAAGGATTGAAGCATATTTGGAGAACCGAGGGACTTCGTGGACTGTTCAAAGGAAATGGCACCAACTGTGCTCGTATTGTTCCTAATTCGGCTGTTAAATTTTTCAGCTATGAGCAAGCTTCAAATGGCATACTGTACATGTATCGTCAGCGGACCGGAAATGAAAATGCCCAACTTACTCCTCTTTTACGGCTTGGAGCTGGTGCAACCGCTGGGATAATAGCCATGTCTGCAACGTACCCGATGGATATGGTTCGTGGAAGGCTAACTGTCCAGACCGCAAATTCTCCTTATCAATATAGAGGAATTGCCCATGCTTTGGCAACTGTCCTGCGAGAGGAAGGTCCACGGGCCTTGTACCGTGGTTGGCTTCCATCAGTGATTGGAGTTGTTCCATATGTGGGCTTGAACTTTTCGGTGTATGAGTCTCTAAAGGACTGGCTAGTTAAAGAGAACCCATACGGTCTAGTAGAAAACAATGAGCTGACGGTTGTAACGAGGCTCACTTGTGGTGCAATAGCTGGAACAGTTGGTCAAACAATTGCTTATCCACTGGATGTGATTCGTAGGAGAATGCAAATGGTCGGGTGGAAAGATGCTTCCGCTATTGTAACAGGCGAAGGGAGAAGCACAGCTTCACTTGAATACACTGGTATGGTCGATGCATTTAGAAAAACAGTTCGTCATGAAGGCTTTGGAGCATTGTACAAGGGTTTGGTCCCCAATTCAGTGAAGGTTGTACCATCGATTGCGATTGCATTTGTGACATATGAGATGGTGAAAGACGTTTTAGGAGTGGAGTTTAGGATATCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

352

Amino Acids

38.32

Weight (kDa)

9.56

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	2 - 73	6.3e-19	Mitochondrial carrier protein
Mito_carr	PF00153	89 - 181	2.1e-27	Mitochondrial carrier protein
Mito_carr	PF00153	191 - 294	1.2e-25	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01100 AT4G01100 AT4G01100
fragaria_vesca	FvH4_5g04080 FvH4_7g16030 FvH4_7g16030 FvH4_7g16030
malus_domestica	MD06G1102400.v1.1 MD07G1145800.v1.1 MD14G1121600.v1.1
prunus_persica	Prupe.2G184000_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1
pyrus_communis	pycom01g10560 pycom06g09720 pycom07g14500
rosa_chinensis	RchiOBHm_Chr1g0358961 RchiOBHm_Chr7g0195421
rosa_laevigata	RLG00000004122 RLG00000027913
rosa_multiflora	Rmu_co7977584.1_g000001 Rmu_sc0008757.1_g000008 Rmu_sc0020160.1_g000001 Rmu_sc0037681.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260500 Rroxscaffold_4G00297510
rosa_rugosa	Rorug01G0266400 Rorug01G0266500 Rorug07G0023100
rosa_samantha	Rh1AG280000 Rh1BG246800 Rh1CG264400 Rh1DG275200 Rh7AG150600 Rh7BG152000 Rh7CG155800 Rh7DG151600
rosa_wichuraiana	Rw1G024890 Rw7G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	559
AciI	CCGC	6 cut(s)	62, 212, 391, 450, 519, 843
AcsI	RAATTY	2 cut(s)	338, 523
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	6 cut(s)	227, 377, 479, 599, 947, 981
AfiI	CCNNNNNNNGG	3 cut(s)	559, 577, 641
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	5 cut(s)	250, 289, 363, 649, 884
AluBI	AGCT	8 cut(s)	38, 89, 348, 359, 440, 724, 761, 875
AluI	AGCT	8 cut(s)	38, 89, 348, 359, 440, 724, 761, 875
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	126, 672
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	591
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	2 cut(s)	338, 523
AspS9I	GGNCC	5 cut(s)	202, 393, 584, 591, 958
AsuHPI	GGTGA	1 cut(s)	1030
AvaII	GGWCC	4 cut(s)	202, 393, 584, 958
BanI	GGYRCC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	4 cut(s)	478, 622, 991, 1009
BceAI	ACGGC	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	126, 672
BfaI	CTAG	2 cut(s)	683, 707
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme18I	GGWCC	4 cut(s)	202, 393, 584, 958
BmgT120I	GGNCC	5 cut(s)	202, 393, 584, 591, 958
BmiI	GGNNCC	2 cut(s)	301, 960
BmsI	GCATC	4 cut(s)	14, 120, 826, 892
Bsa29I	ATCGAT	1 cut(s)	986
BsaJI	CCNNGG	4 cut(s)	241, 267, 587, 601
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	3 cut(s)	559, 577, 641
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	3 cut(s)	683, 798, 895
BseCI	ATCGAT	1 cut(s)	986
BseDI	CCNNGG	4 cut(s)	241, 267, 587, 601
BseGI	GGATG	3 cut(s)	19, 189, 802
BseLI	CCNNNNNNNGG	3 cut(s)	559, 577, 641
BseNI	ACTGG	3 cut(s)	683, 798, 895
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	47
BseYI	CCCAGC	1 cut(s)	452
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	593
BshNI	GGYRCC	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	986
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	132, 396
BslFI	GGGAC	3 cut(s)	247, 285, 944
BslI	CCNNNNNNNGG	3 cut(s)	559, 577, 641
BsmAI	GTCTC	2 cut(s)	126, 672
BsmFI	GGGAC	3 cut(s)	247, 285, 944
BsmI	GAATGC	1 cut(s)	819
BsnI	GGCC	1 cut(s)	593
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp1407I	TGTACA	2 cut(s)	375, 945
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	6 cut(s)	62, 212, 391, 450, 519, 843
BspANI	GGCC	1 cut(s)	593
BspDI	ATCGAT	1 cut(s)	986
BspHI	TCATGA	1 cut(s)	925
BspLI	GGNNCC	2 cut(s)	301, 960
BspT107I	GGYRCC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	131
BsrGI	TGTACA	2 cut(s)	375, 945
BsrI	ACTGG	3 cut(s)	683, 798, 895
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	4 cut(s)	241, 267, 587, 601
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	241
BstAUI	TGTACA	2 cut(s)	375, 945
BstC8I	GCNNGC	1 cut(s)	357
BstDSI	CCRYGG	2 cut(s)	587, 601
BstENI	CCTNNNNNAGG	1 cut(s)	575
BstF5I	GGATG	3 cut(s)	19, 189, 802
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	2 cut(s)	126, 672
BstMBI	GATC	1 cut(s)	48
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 470
BstNSI	RCATGY	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	47
Bsu15I	ATCGAT	1 cut(s)	986
BsuRI	GGCC	1 cut(s)	593
BsuTUI	ATCGAT	1 cut(s)	986
BtgI	CCRYGG	2 cut(s)	587, 601
BtsCI	GGATG	3 cut(s)	19, 189, 802
BtsIMutI	CAGTG	5 cut(s)	235, 624, 791, 888, 975
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	925
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	5 cut(s)	202, 393, 584, 591, 958
ClaI	ATCGAT	1 cut(s)	986
CpoI	CGGWCCG	1 cut(s)	393
Csp6I	GTAC	6 cut(s)	226, 376, 478, 598, 946, 980
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CspI	CGGWCCG	1 cut(s)	393
CviAII	CATG	4 cut(s)	379, 466, 554, 926
CviQI	GTAC	6 cut(s)	226, 376, 478, 598, 946, 980
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DraI	TTTAAA	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	1050
Eco47I	GGWCC	4 cut(s)	202, 393, 584, 958
Eco57I	CTGAAG	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	575
EcoRV	GATATC	1 cut(s)	1050
EcoT14I	CCWWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	907
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	4 cut(s)	382, 469, 557, 929
FalI	AAGNNNNNCTT	2 cut(s)	859, 891
FaqI	GGGAC	3 cut(s)	247, 285, 944
FatI	CATG	4 cut(s)	378, 465, 553, 925
FauNDI	CATATG	2 cut(s)	637, 1009
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	3 cut(s)	26, 196, 809
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	2 cut(s)	683, 707
GluI	GCNGC	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	593
HapII	CCGG	2 cut(s)	132, 396
Hin1II	CATG	4 cut(s)	382, 469, 557, 929
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	4 cut(s)	29, 81, 665, 802
HpaII	CCGG	2 cut(s)	132, 396
HphI	GGTGA	1 cut(s)	1030
Hpy166II	GTNNAC	3 cut(s)	45, 281, 587
Hpy188I	TCNGA	3 cut(s)	10, 93, 1054
Hpy188III	TCNNGA	4 cut(s)	156, 176, 514, 926
Hpy8I	GTNNAC	3 cut(s)	45, 281, 587
HpyAV	CCTTC	6 cut(s)	71, 495, 575, 854, 923, 967
HpyCH4IV	ACGT	2 cut(s)	476, 1026
HpyCH4V	TGCA	8 cut(s)	117, 170, 446, 473, 755, 817, 905, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 470
HpySE526I	ACGT	2 cut(s)	476, 1026
Hsp92II	CATG	4 cut(s)	382, 469, 557, 929
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	3 cut(s)	94, 437, 938
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	4 cut(s)	14, 120, 826, 892
MaeI	CTAG	2 cut(s)	683, 707
MaeII	ACGT	2 cut(s)	476, 1026
MaeIII	GTNAC	4 cut(s)	153, 733, 850, 1003
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	199
MfeI	CAATTG	1 cut(s)	780
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	6 cut(s)	325, 338, 523, 546, 780, 964
MlyI	GAGTC	2 cut(s)	90, 674
MnlI	CCTC	9 cut(s)	4, 58, 66, 183, 262, 432, 536, 571, 732
Mph1103I	ATGCAT	1 cut(s)	907
MseI	TTAA	3 cut(s)	105, 336, 687
MslI	CAYNNNNRTG	1 cut(s)	893
MspA1I	CMGCKG	3 cut(s)	38, 391, 452
MspI	CCGG	2 cut(s)	132, 396
MunI	CAATTG	1 cut(s)	780
Mva1269I	GAATGC	1 cut(s)	819
MwoI	GCNNNNNNNGC	2 cut(s)	68, 470
NdeI	CATATG	2 cut(s)	637, 1009
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	4 cut(s)	382, 469, 557, 929
NlaIV	GGNNCC	2 cut(s)	301, 960
NmuCI	GTSAC	2 cut(s)	153, 1003
NsiI	ATGCAT	1 cut(s)	907
NspI	RCATGY	1 cut(s)	382
PagI	TCATGA	1 cut(s)	925
PciI	ACATGT	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	734
PctI	GAATGC	1 cut(s)	819
PfeI	GAWTC	2 cut(s)	29, 802
PflMI	CCANNNNNTGG	1 cut(s)	559
PkrI	GCNGC	1 cut(s)	37
Ple19I	CGATCG	1 cut(s)	51
PleI	GAGTC	2 cut(s)	89, 673
PpsI	GAGTC	2 cut(s)	89, 673
PscI	ACATGT	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	301, 960
PspPI	GGNCC	5 cut(s)	202, 393, 584, 591, 958
PstNI	CAGNNNCTG	1 cut(s)	38
PvuI	CGATCG	1 cut(s)	51
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	6 cut(s)	227, 377, 479, 599, 947, 981
RsaNI	GTAC	6 cut(s)	226, 376, 478, 598, 946, 980
RseI	CAYNNNNRTG	1 cut(s)	893
Rsr2I	CGGWCCG	1 cut(s)	393
RsrII	CGGWCCG	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	105, 336, 687
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	5 cut(s)	202, 393, 584, 591, 958
SchI	GAGTC	2 cut(s)	90, 674
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	4 cut(s)	14, 120, 826, 892
SinI	GGWCC	4 cut(s)	202, 393, 584, 958
SmiMI	CAYNNNNRTG	1 cut(s)	893
Sse9I	AATT	6 cut(s)	325, 338, 523, 546, 780, 964
SsiI	CCGC	6 cut(s)	62, 212, 391, 450, 519, 843
SspMI	CTAG	2 cut(s)	683, 707
StyI	CCWWGG	1 cut(s)	241
TaiI	ACGT	2 cut(s)	479, 1029
TaqI	TCGA	2 cut(s)	900, 986
TasI	AATT	6 cut(s)	325, 338, 523, 546, 780, 964
TatI	WGTACW	3 cut(s)	225, 375, 945
TfiI	GAWTC	2 cut(s)	29, 802
Tru1I	TTAA	3 cut(s)	105, 336, 687
Tru9I	TTAA	3 cut(s)	105, 336, 687
TscAI	CASTG	5 cut(s)	235, 624, 798, 895, 975
TseFI	GTSAC	2 cut(s)	153, 1003
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	153, 1003
TspDTI	ATGAA	3 cut(s)	200, 417, 942
TspRI	CASTG	5 cut(s)	235, 624, 798, 895, 975
Van91I	CCANNNNNTGG	1 cut(s)	559
VpaK11BI	GGWCC	4 cut(s)	202, 393, 584, 958
XagI	CCTNNNNNAGG	1 cut(s)	575
XapI	RAATTY	2 cut(s)	338, 523
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	2 cut(s)	683, 707
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.