Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002591

Physical Location & Seq

Genomic Coordinates Forward (+)

11243141 .. 11246999

Gene Structure 3859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG152000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCAGGTTCAAAATCCTCATAGTATTAAATACAATGGGACAGTTCAGGGCTTGAAGTATATATGGAGAACTGAGGGTCTCAGAGGCTTGTTTAAGGGCAATGGAACTAATTGTGCTCGCATAGTCCCAAATTCAGCAGTCAAGTTCTTTAGCTATGAAGAAGCATCTAAGGGTATCCTATGGTTTTATCGACAGCAAACTGGAAATGAAAATGCTCAACTCACACCTCTTTTGCGCCTCGGAGCTGGTGCATGTGCTGGAATTATTGCAATGTCAGCAACTTACCCGATGGACATGGTACGAGGGCGTCTAACTGTGCAGACGGAAAACTCTCCTTGGCATTATAGGGGAATATTTCATGCTCTTTCAACTGTCTTTCGGGAAGAGGGACCTAGGGCTCTGTACAAAGGCTGGCTACCTTCTGTCATTGGAGTTATACCATATGTTGGTCTCAATTTTGCCGTTTATGAATCTCTGAAAGATTGGTTGATCAAAACTAGACCTTTCGGACTAGTTCAAGACACTGAGTTGAGTATAACTACAAAGCTTGCATGTGGGGCTGCAGCTGGAACTGTTGGCCAGACGGTTGCTTACCCTCTTGATGTTGTTCGGCGAAGAATGCAGATGGTAGGCTGGAAGAATGCCGCTTCGGTTGTCACTGGGGATGGGAAGAGCAAAGCAGCCCTTGAATATACTGGTATGGTAGATACATTCAGGAAAACAGTTCGTCATGAGGGGTTTGGGGCACTGTACAAGGGTTTGGTCCCCAATTCTGTTAAGGTGGTGCCTTCCATAGCAATTGCCTTTGTCACATATGAGGTAGTGAAGGATGTTCTTGGAGTTGAGATGAGGATATCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

287

Amino Acids

31.64

Weight (kDa)

9.62

Isoelectric Point (pI)

23.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	1 - 57	1.1e-12	Mitochondrial carrier protein
Mito_carr	PF00153	74 - 165	1.2e-27	Mitochondrial carrier protein
Mito_carr	PF00153	177 - 279	1.3e-25	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01100 AT4G01100 AT4G01100
fragaria_vesca	FvH4_5g04080 FvH4_7g16030 FvH4_7g16030 FvH4_7g16030
malus_domestica	MD06G1102400.v1.1 MD07G1145800.v1.1 MD14G1121600.v1.1
prunus_persica	Prupe.2G184000_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1
pyrus_communis	pycom01g10560 pycom06g09720 pycom07g14500
rosa_chinensis	RchiOBHm_Chr1g0358961 RchiOBHm_Chr7g0195421
rosa_laevigata	RLG00000004122 RLG00000027913
rosa_multiflora	Rmu_co7977584.1_g000001 Rmu_sc0008757.1_g000008 Rmu_sc0020160.1_g000001 Rmu_sc0037681.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260500 Rroxscaffold_4G00297510
rosa_rugosa	Rorug01G0266400 Rorug01G0266500 Rorug07G0023100
rosa_samantha	Rh1AG280000 Rh1BG246800 Rh1CG264400 Rh1DG275200 Rh7AG150600 Rh7BG152000 Rh7CG155800 Rh7DG151600
rosa_wichuraiana	Rw1G024890 Rw7G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	784
AccB7I	CCANNNNNTGG	1 cut(s)	446
AciI	CCGC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	3 cut(s)	300, 404, 752
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	5 cut(s)	11, 55, 369, 518, 689
AhlI	ACTAGT	1 cut(s)	511
AluBI	AGCT	4 cut(s)	153, 245, 547, 566
AluI	AGCT	4 cut(s)	153, 245, 547, 566
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	2 cut(s)	83, 455
AoxI	GGCC	1 cut(s)	577
ApeKI	GCWGC	3 cut(s)	560, 563, 680
ApoI	RAATTY	1 cut(s)	130
AspA2I	CCTAGG	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	389, 763
AvaII	GGWCC	2 cut(s)	389, 763
AvrII	CCTAGG	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	748
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	3 cut(s)	547, 575, 692
BccI	CCATC	3 cut(s)	283, 619, 659
BceAI	ACGGC	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	185
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	83, 455
BcuI	ACTAGT	1 cut(s)	511
BfaI	CTAG	3 cut(s)	393, 498, 512
BfmI	CTRYAG	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	185
BisI	GCNGC	4 cut(s)	561, 564, 645, 681
BlnI	CCTAGG	1 cut(s)	392
BlsI	GCNGC	4 cut(s)	562, 565, 646, 682
Bme18I	GGWCC	2 cut(s)	389, 763
BmgT120I	GGNCC	2 cut(s)	389, 763
BmiI	GGNNCC	3 cut(s)	390, 765, 786
BmrI	ACTGGG	1 cut(s)	669
BmsI	GCATC	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	307
BsaI	GGTCTC	2 cut(s)	83, 455
BsaJI	CCNNGG	3 cut(s)	238, 335, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	3 cut(s)	205, 664, 700
Bse3DI	GCAATG	2 cut(s)	106, 276
BseDI	CCNNGG	3 cut(s)	238, 335, 392
BseGI	GGATG	2 cut(s)	670, 835
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	2 cut(s)	106, 276
BseMII	CTCAG	3 cut(s)	63, 94, 516
BseNI	ACTGG	3 cut(s)	205, 664, 700
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	3 cut(s)	547, 575, 692
BsgI	GTGCAG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	579
BshNI	GGYRCC	1 cut(s)	784
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	4 cut(s)	52, 110, 402, 749
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	2 cut(s)	83, 455
BsmFI	GGGAC	4 cut(s)	52, 110, 402, 749
BsmI	GAATGC	2 cut(s)	624, 646
BsnI	GGCC	1 cut(s)	579
Bso31I	GGTCTC	2 cut(s)	83, 455
Bsp1286I	GDGCHC	3 cut(s)	118, 400, 748
Bsp1407I	TGTACA	2 cut(s)	402, 750
Bsp143I	GATC	1 cut(s)	489
BspACI	CCGC	1 cut(s)	645
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	3 cut(s)	64, 93, 517
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	3 cut(s)	390, 765, 786
BspMAI	CTGCAG	1 cut(s)	565
BspQI	GCTCTTC	1 cut(s)	665
BspT107I	GGYRCC	1 cut(s)	784
BspTNI	GGTCTC	2 cut(s)	83, 455
BsrDI	GCAATG	2 cut(s)	106, 276
BsrGI	TGTACA	2 cut(s)	402, 750
BsrI	ACTGG	3 cut(s)	205, 664, 700
BssECI	CCNNGG	3 cut(s)	238, 335, 392
BssMI	GATC	1 cut(s)	489
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	335, 392
Bst4CI	ACNGT	7 cut(s)	43, 316, 373, 574, 586, 724, 750
Bst6I	CTCTTC	2 cut(s)	378, 665
BstACI	GRCGYC	1 cut(s)	307
BstAUI	TGTACA	2 cut(s)	402, 750
BstC8I	GCNNGC	3 cut(s)	118, 413, 549
BstDEI	CTNAG	4 cut(s)	72, 80, 168, 525
BstF5I	GGATG	2 cut(s)	670, 835
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	2 cut(s)	83, 455
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 557, 619
BstNSI	RCATGY	2 cut(s)	255, 555
BstSFI	CTRYAG	1 cut(s)	561
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	3 cut(s)	547, 575, 692
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	670, 835
BtsIMutI	CAGTG	3 cut(s)	522, 657, 746
Cac8I	GCNNGC	3 cut(s)	118, 413, 549
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	389, 763
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	3 cut(s)	299, 403, 751
CviAII	CATG	5 cut(s)	252, 295, 359, 552, 731
CviQI	GTAC	3 cut(s)	299, 403, 751
DdeI	CTNAG	4 cut(s)	72, 80, 168, 525
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	378, 665
EarI	CTCTTC	2 cut(s)	378, 665
Eco130I	CCWWGG	2 cut(s)	335, 392
Eco24I	GRGCYC	1 cut(s)	400
Eco31I	GGTCTC	2 cut(s)	83, 455
Eco32I	GATATC	1 cut(s)	855
Eco47I	GGWCC	2 cut(s)	389, 763
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRV	GATATC	1 cut(s)	855
EcoT14I	CCWWGG	2 cut(s)	335, 392
EcoT38I	GRGCYC	1 cut(s)	400
ErhI	CCWWGG	2 cut(s)	335, 392
FaeI	CATG	5 cut(s)	255, 298, 362, 555, 734
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FaqI	GGGAC	4 cut(s)	52, 110, 402, 749
FatI	CATG	5 cut(s)	251, 294, 358, 551, 730
FauNDI	CATATG	2 cut(s)	442, 814
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	4 cut(s)	561, 564, 645, 681
FokI	GGATG	2 cut(s)	677, 842
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	4 cut(s)	561, 564, 645, 681
FspBI	CTAG	3 cut(s)	393, 498, 512
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	4 cut(s)	561, 564, 645, 681
HaeIII	GGCC	1 cut(s)	579
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	5 cut(s)	255, 298, 362, 555, 734
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	1 cut(s)	470
Hpy188I	TCNGA	5 cut(s)	83, 242, 477, 509, 859
Hpy188III	TCNNGA	5 cut(s)	380, 518, 599, 715, 731
HpyAV	CCTTC	3 cut(s)	429, 798, 820
HpyCH4III	ACNGT	7 cut(s)	43, 316, 373, 574, 586, 724, 750
HpyCH4V	TGCA	7 cut(s)	4, 251, 269, 319, 551, 563, 622
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 557, 619
HpyF3I	CTNAG	4 cut(s)	72, 80, 168, 525
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	5 cut(s)	255, 298, 362, 555, 734
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	1 cut(s)	489
LguI	GCTCTTC	1 cut(s)	665
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	3 cut(s)	547, 575, 692
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	3 cut(s)	393, 498, 512
MaeIII	GTNAC	2 cut(s)	655, 808
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	5 cut(s)	170, 395, 627, 649, 682
MfeI	CAATTG	1 cut(s)	798
MhlI	GDGCHC	3 cut(s)	118, 400, 748
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	6 cut(s)	109, 130, 261, 454, 769, 798
MluNI	TGGCCA	1 cut(s)	579
Mox20I	TGGCCA	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	3 cut(s)	27, 93, 777
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	566
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	2 cut(s)	624, 646
MwoI	GCNNNNNNNGC	3 cut(s)	275, 557, 619
NdeI	CATATG	2 cut(s)	442, 814
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	5 cut(s)	255, 298, 362, 555, 734
NlaIV	GGNNCC	3 cut(s)	390, 765, 786
NmuCI	GTSAC	2 cut(s)	655, 808
NspI	RCATGY	2 cut(s)	255, 555
PagI	TCATGA	1 cut(s)	730
PciSI	GCTCTTC	1 cut(s)	665
PctI	GAATGC	2 cut(s)	624, 646
PfeI	GAWTC	1 cut(s)	470
PflMI	CCANNNNNTGG	1 cut(s)	446
PkrI	GCNGC	4 cut(s)	562, 565, 646, 682
PpuMI	RGGWCCY	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	390, 765, 786
PspPI	GGNCC	2 cut(s)	389, 763
PspPPI	RGGWCCY	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	3 cut(s)	300, 404, 752
RsaNI	GTAC	3 cut(s)	299, 403, 751
SapI	GCTCTTC	1 cut(s)	665
SaqAI	TTAA	3 cut(s)	27, 93, 777
SatI	GCNGC	4 cut(s)	561, 564, 645, 681
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	2 cut(s)	389, 763
SduI	GDGCHC	3 cut(s)	118, 400, 748
SfaNI	GCATC	1 cut(s)	173
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	2 cut(s)	389, 763
SpeI	ACTAGT	1 cut(s)	511
Sse9I	AATT	6 cut(s)	109, 130, 261, 454, 769, 798
SsiI	CCGC	1 cut(s)	645
SspI	AATATT	1 cut(s)	354
SspMI	CTAG	3 cut(s)	393, 498, 512
StyI	CCWWGG	2 cut(s)	335, 392
TaaI	ACNGT	7 cut(s)	43, 316, 373, 574, 586, 724, 750
TaqI	TCGA	1 cut(s)	190
TasI	AATT	6 cut(s)	109, 130, 261, 454, 769, 798
TatI	WGTACW	2 cut(s)	402, 750
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	3 cut(s)	27, 93, 777
Tru9I	TTAA	3 cut(s)	27, 93, 777
TscAI	CASTG	3 cut(s)	529, 664, 753
TseFI	GTSAC	2 cut(s)	655, 808
TseI	GCWGC	3 cut(s)	560, 563, 680
Tsp45I	GTSAC	2 cut(s)	655, 808
TspDTI	ATGAA	4 cut(s)	171, 222, 347, 483
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	529, 664, 753
Van91I	CCANNNNNTGG	1 cut(s)	446
VpaK11BI	GGWCC	2 cut(s)	389, 763
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	2 cut(s)	255, 555
XmaJI	CCTAGG	1 cut(s)	392
XspI	CTAG	3 cut(s)	393, 498, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.