Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002591

Physical Location & Seq

Genomic Coordinates Reverse (-)

11314489 .. 11316145

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTCTGCAACCTACCCAATGGACATGGTACGAGGAAGGATCACTGTACAGACAGAGAATTCTCCCTTTCAGTACAGGGGAATGTTCCATGCTCTATCAACTGTGCTCCGGGAGGAGGGCCCACGGGCTTTGTACAAGGGCTGGCTTCCTTCTGTTATTGGAGTTGTTCCATATGTTGGTCTCAACTTTGCTGTGTATGAATCCCTGAAGGATTGGTTAATCAAAAGTAGGCCATTTGGACTTGTTCAAGATACAGATTTGAGCGTGACAACAAGGTTGGCATGCGGAGCTGCTGCTGGAACTGTTGGGCAAACTGTTGCTTACCCTCTTGATGTCATTCGTCGAAGGATGCAGATGGTGGGATGGAGCCACGCTGCTTCTGTTGTCAGTGGTGATGGGATAAGCAAGACCCCACTTGAATATACTGGCATGGTTGACGCGTTTAGGAAAACTGTTCGACATGAGGGCTTTGGTGCATTGTACAAGGGTTTGGTTCCCAATTGTGTTAAGGTAGTCCCATCTATTGCAATTGCATTTGTGACGTATGAGATGGTGAAGGACATTTTAGGAGTTGAGATCAGGATATCGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

198

Amino Acids

21.67

Weight (kDa)

9.1

Isoelectric Point (pI)

30.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01100 AT4G01100 AT4G01100
fragaria_vesca	FvH4_5g04080 FvH4_7g16030 FvH4_7g16030 FvH4_7g16030
malus_domestica	MD06G1102400.v1.1 MD07G1145800.v1.1 MD14G1121600.v1.1
prunus_persica	Prupe.2G184000_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1
pyrus_communis	pycom01g10560 pycom06g09720 pycom07g14500
rosa_chinensis	RchiOBHm_Chr1g0358961 RchiOBHm_Chr7g0195421
rosa_laevigata	RLG00000004122 RLG00000027913
rosa_multiflora	Rmu_co7977584.1_g000001 Rmu_sc0008757.1_g000008 Rmu_sc0020160.1_g000001 Rmu_sc0037681.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260500 Rroxscaffold_4G00297510
rosa_rugosa	Rorug01G0266400 Rorug01G0266500 Rorug07G0023100
rosa_samantha	Rh1AG280000 Rh1BG246800 Rh1CG264400 Rh1DG275200 Rh7AG150600 Rh7BG152000 Rh7CG155800 Rh7DG151600
rosa_wichuraiana	Rw1G024890 Rw7G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	176
AccII	CGCG	1 cut(s)	440
AciI	CCGC	1 cut(s)	285
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	5 cut(s)	30, 48, 74, 134, 482
AfiI	CCNNNNNNNGG	2 cut(s)	115, 176
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	248, 419
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	118, 230
ApaI	GGGCCC	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	290, 293, 374
ApoI	RAATTY	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	118, 119
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	404, 565
BaeGI	GKGCMC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	3 cut(s)	277, 280, 361
BccI	CCATC	5 cut(s)	349, 357, 389, 526, 544
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	185
BisI	GCNGC	3 cut(s)	291, 294, 375
BlsI	GCNGC	3 cut(s)	292, 295, 376
Bme1390I	CCNGG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	118, 119
BmiI	GGNNCC	3 cut(s)	120, 368, 495
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 176
Bse1I	ACTGG	1 cut(s)	430
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	2 cut(s)	354, 368
BseLI	CCNNNNNNNGG	2 cut(s)	115, 176
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	277, 280, 361
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	2 cut(s)	120, 232
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	115, 176
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	120, 232
Bso31I	GGTCTC	1 cut(s)	185
Bsp120I	GGGCCC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	108, 122
Bsp1407I	TGTACA	3 cut(s)	46, 132, 480
Bsp143I	GATC	2 cut(s)	39, 576
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	2 cut(s)	120, 232
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	3 cut(s)	120, 368, 495
BspPI	GGATC	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	185
BsrGI	TGTACA	3 cut(s)	46, 132, 480
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	2 cut(s)	39, 576
Bst4CI	ACNGT	5 cut(s)	46, 103, 304, 316, 454
BstAUI	TGTACA	3 cut(s)	46, 132, 480
BstC8I	GCNNGC	2 cut(s)	143, 283
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	354, 368
BstFNI	CGCG	1 cut(s)	440
BstKTI	GATC	2 cut(s)	42, 579
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	39, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	3 cut(s)	277, 280, 361
BsuRI	GGCC	2 cut(s)	120, 232
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	354, 368
BtsIMutI	CAGTG	2 cut(s)	42, 394
Cac8I	GCNNGC	2 cut(s)	143, 283
Cfr13I	GGNCC	2 cut(s)	118, 119
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	5 cut(s)	29, 47, 73, 133, 481
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	5 cut(s)	25, 89, 282, 430, 461
CviJI	RGCY	8 cut(s)	120, 128, 141, 145, 232, 290, 369, 468
CviKI_1	RGCY	8 cut(s)	120, 128, 141, 145, 232, 290, 369, 468
CviQI	GTAC	5 cut(s)	29, 47, 73, 133, 481
DpnI	GATC	2 cut(s)	41, 578
DpnII	GATC	2 cut(s)	39, 576
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	5 cut(s)	28, 92, 285, 433, 464
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	5 cut(s)	24, 88, 281, 429, 460
FauNDI	CATATG	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	291, 294, 375
FokI	GGATG	2 cut(s)	361, 375
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	3 cut(s)	291, 294, 375
GluI	GCNGC	3 cut(s)	291, 294, 375
HaeIII	GGCC	2 cut(s)	120, 232
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	1 cut(s)	446
Hin1II	CATG	5 cut(s)	28, 92, 285, 433, 464
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	2 cut(s)	404, 565
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	1 cut(s)	589
Hpy188III	TCNNGA	3 cut(s)	248, 329, 580
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	5 cut(s)	30, 159, 202, 339, 550
HpyCH4III	ACNGT	5 cut(s)	46, 103, 304, 316, 454
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	5 cut(s)	8, 352, 476, 527, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	5 cut(s)	28, 92, 285, 433, 464
Kzo9I	GATC	2 cut(s)	39, 576
LmnI	GCTCC	3 cut(s)	111, 287, 366
LpnPI	CCDG	7 cut(s)	61, 122, 127, 218, 282, 411, 565
Lsp1109I	GCAGC	3 cut(s)	277, 280, 361
LweI	GCATC	1 cut(s)	339
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	2 cut(s)	265, 538
MalI	GATC	2 cut(s)	41, 578
MboI	GATC	2 cut(s)	39, 576
MfeI	CAATTG	2 cut(s)	499, 528
MhlI	GDGCHC	2 cut(s)	108, 122
MluCI	AATT	3 cut(s)	58, 499, 528
MluI	ACGCGT	1 cut(s)	438
MnlI	CCTC	5 cut(s)	26, 106, 109, 336, 457
MseI	TTAA	2 cut(s)	218, 507
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	2 cut(s)	499, 528
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	1 cut(s)	110
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	2 cut(s)	39, 576
NlaIII	CATG	5 cut(s)	28, 92, 285, 433, 464
NlaIV	GGNNCC	3 cut(s)	120, 368, 495
NmuCI	GTSAC	2 cut(s)	265, 538
NspI	RCATGY	1 cut(s)	285
PaeI	GCATGC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	176
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	292, 295, 376
PspN4I	GGNNCC	3 cut(s)	120, 368, 495
PspOMI	GGGCCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	118, 119
RsaI	GTAC	5 cut(s)	30, 48, 74, 134, 482
RsaNI	GTAC	5 cut(s)	29, 47, 73, 133, 481
SaqAI	TTAA	2 cut(s)	218, 507
SatI	GCNGC	3 cut(s)	291, 294, 375
Sau3AI	GATC	2 cut(s)	39, 576
Sau96I	GGNCC	2 cut(s)	118, 119
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	108, 122
SetI	ASST	5 cut(s)	14, 278, 292, 513, 545
SfaNI	GCATC	1 cut(s)	339
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	3 cut(s)	58, 499, 528
SsiI	CCGC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	5 cut(s)	46, 103, 304, 316, 454
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	2 cut(s)	343, 457
TasI	AATT	3 cut(s)	58, 499, 528
TatI	WGTACW	4 cut(s)	46, 72, 132, 480
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	218, 507
Tru9I	TTAA	2 cut(s)	218, 507
TscAI	CASTG	2 cut(s)	49, 394
TseFI	GTSAC	2 cut(s)	265, 538
TseI	GCWGC	3 cut(s)	290, 293, 374
Tsp45I	GTSAC	2 cut(s)	265, 538
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	49, 394
Van91I	CCANNNNNTGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.