Rorug01G0266400

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002591
Physical Location & Seq
Reverse (-)
37845746 .. 37846404
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0266400.1

Sequence Viewer

Length: 537 bp
ATGACGTCTCGATCTATAGAAATCACTGTTCTCTCCGCAGAAAATCTGCAATCAAACAGAAAACCCTTCAAAAAAAACTCCTTCGTTACTGTGCGGACCGACGCTGCCGTATCCACCTCCAAGTTGTACCGGACGGCGGAGACTGACTGCGAAGGCGGCGGTCCAAGGTGGAACGAGAAGATTGAGGTCGAACTTCCGGCGCAGGCTAGGAATCTGATATTGGAAGTACAATGCAAGAACGGTGCAAGGACGATCGGAGCGGCGAGTATTCCGGTGTCGGACTTCATCTGCGGGTGGGTGCCTGAGAACTACTTGCATTTTCTGAGTTATACGTTGAGGGATGAGAGAGGAGTGAGGAATGGGATTATTAATATCTCGGTGAGCATGAAGGTTCCGGAAGGTTTGATGTCGACGTACGCGAGGAAGGCGACGAGTGGGTGTGCTACGACGTCGTCGCAGACCAAGGTGGGGTGTCCGGCGGTGGAGAACAGTGGTGTTGCAATTGGGGTTCCGCTGAATTGGAATAGCTATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

178

Amino Acids

19.36

Weight (kDa)

8.85

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 95 1.1e-07 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 8, 452
AccB1I GGYRCC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 410
AccII CGCG 1 cut(s) 419
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 9 cut(s) 36, 94, 137, 156, 159, 260, 291, 479, 512
AcyI GRCGYC 2 cut(s) 5, 449
AfaI GTAC 3 cut(s) 128, 228, 416
AfiI CCNNNNNNNGG 2 cut(s) 136, 468
AgsI TTSAA 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 1 cut(s) 528
AluI AGCT 1 cut(s) 528
Alw26I GTCTC 2 cut(s) 12, 134
Aor13HI TCCGGA 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 104
AseI ATTAAT 1 cut(s) 369
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 96, 161
AsuHPI GGTGA 1 cut(s) 391
AvaII GGWCC 2 cut(s) 96, 161
BanI GGYRCC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 91
BceAI ACGGC 2 cut(s) 92, 150
BciVI GTATCC 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 12, 134
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 15
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 3 cut(s) 105, 157, 261
BlsI GCNGC 3 cut(s) 106, 158, 262
Bme18I GGWCC 2 cut(s) 96, 161
BmgT120I GGNCC 2 cut(s) 96, 161
BmiI GGNNCC 3 cut(s) 300, 393, 510
BsaHI GRCGYC 2 cut(s) 5, 449
BsaJI CCNNGG 2 cut(s) 164, 462
BsaWI WCCGGW 3 cut(s) 129, 271, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 468
BseAI TCCGGA 1 cut(s) 394
BseDI CCNNGG 2 cut(s) 164, 462
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 2 cut(s) 136, 468
BseMII CTCAG 2 cut(s) 294, 314
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 419
Bsh1285I CGRYCG 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 255
BsiSI CCGG 5 cut(s) 130, 197, 272, 395, 476
BsiWI CGTACG 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 136, 468
BsmAI GTCTC 2 cut(s) 12, 134
BsmBI CGTCTC 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 2 cut(s) 11, 252
BspACI CCGC 9 cut(s) 36, 94, 137, 156, 159, 260, 291, 479, 512
BspCNI CTCAG 2 cut(s) 295, 315
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 3 cut(s) 300, 393, 510
BspT107I GGYRCC 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 164, 462
BssMI GATC 2 cut(s) 11, 252
BssNI GRCGYC 2 cut(s) 5, 449
BssT1I CCWWGG 2 cut(s) 164, 462
Bst4CI ACNGT 4 cut(s) 28, 91, 242, 491
BstACI GRCGYC 2 cut(s) 5, 449
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 303, 323
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 419
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 2 cut(s) 14, 255
BstMAI GTCTC 2 cut(s) 12, 134
BstMBI GATC 2 cut(s) 11, 252
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 2 cut(s) 156, 425
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 91
BsuI GTATCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 24, 496
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 96, 161
CpoI CGGWCCG 1 cut(s) 96
CseI GACGC 1 cut(s) 110
Csp6I GTAC 3 cut(s) 127, 227, 415
CspI CGGWCCG 1 cut(s) 96
CviAII CATG 1 cut(s) 385
CviJI RGCY 2 cut(s) 206, 528
CviKI_1 RGCY 2 cut(s) 206, 528
CviQI GTAC 3 cut(s) 127, 227, 415
DdeI CTNAG 2 cut(s) 303, 323
DpnI GATC 2 cut(s) 13, 254
DpnII GATC 2 cut(s) 11, 252
EciI GGCGGA 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 164, 462
Eco47I GGWCC 2 cut(s) 96, 161
EcoT14I CCWWGG 2 cut(s) 164, 462
ErhI CCWWGG 2 cut(s) 164, 462
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 1 cut(s) 388
FaiI YATR 3 cut(s) 17, 330, 386
FatI CATG 1 cut(s) 384
FauI CCCGC 1 cut(s) 284
FblI GTMKAC 1 cut(s) 410
Fnu4HI GCNGC 3 cut(s) 105, 157, 261
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 3 cut(s) 105, 157, 261
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 201
GluI GCNGC 3 cut(s) 105, 157, 261
HapII CCGG 5 cut(s) 130, 197, 272, 395, 476
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 202
Hin1I GRCGYC 2 cut(s) 5, 449
Hin1II CATG 1 cut(s) 388
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 1 cut(s) 211
HpaII CCGG 5 cut(s) 130, 197, 272, 395, 476
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 411
Hpy188I TCNGA 4 cut(s) 216, 257, 280, 324
Hpy188III TCNNGA 2 cut(s) 9, 395
Hpy8I GTNNAC 1 cut(s) 411
Hpy99I CGWCG 6 cut(s) 104, 415, 433, 451, 454, 457
HpyAV CCTTC 6 cut(s) 76, 91, 146, 382, 392, 418
HpyCH4III ACNGT 4 cut(s) 28, 91, 242, 491
HpyCH4IV ACGT 4 cut(s) 5, 332, 413, 449
HpyCH4V TGCA 5 cut(s) 49, 234, 245, 316, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 425
HpyF3I CTNAG 2 cut(s) 303, 323
HpySE526I ACGT 4 cut(s) 5, 332, 413, 449
Hsp92I GRCGYC 2 cut(s) 5, 449
Hsp92II CATG 1 cut(s) 388
HspAI GCGC 1 cut(s) 200
Kpn2I TCCGGA 1 cut(s) 394
Kzo9I GATC 2 cut(s) 11, 252
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 7 cut(s) 143, 188, 210, 285, 315, 408, 489
Lsp1109I GCAGC 1 cut(s) 91
MaeI CTAG 1 cut(s) 207
MaeII ACGT 4 cut(s) 5, 332, 413, 449
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 13, 254
MbiI CCGCTC 1 cut(s) 260
MboI GATC 2 cut(s) 11, 252
MboII GAAGA 1 cut(s) 190
MfeI CAATTG 1 cut(s) 501
MluCI AATT 2 cut(s) 501, 517
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 6 cut(s) 127, 178, 330, 341, 348, 414
MroI TCCGGA 1 cut(s) 394
MseI TTAA 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 5 cut(s) 130, 197, 272, 395, 476
MunI CAATTG 1 cut(s) 501
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 156, 425
NdeII GATC 2 cut(s) 11, 252
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 3 cut(s) 300, 393, 510
PcsI WCGNNNNNNNCGW 1 cut(s) 416
PfeI GAWTC 1 cut(s) 211
Pfl23II CGTACG 1 cut(s) 414
PflFI GACNNNGTC 1 cut(s) 451
PkrI GCNGC 3 cut(s) 106, 158, 262
Ple19I CGATCG 1 cut(s) 255
PshBI ATTAAT 1 cut(s) 369
PspLI CGTACG 1 cut(s) 414
PspN4I GGNNCC 3 cut(s) 300, 393, 510
PspPI GGNCC 2 cut(s) 96, 161
PsyI GACNNNGTC 1 cut(s) 451
PvuI CGATCG 1 cut(s) 255
RsaI GTAC 3 cut(s) 128, 228, 416
RsaNI GTAC 3 cut(s) 127, 227, 415
Rsr2I CGGWCCG 1 cut(s) 96
RsrII CGGWCCG 1 cut(s) 96
SalI GTCGAC 1 cut(s) 409
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 105, 157, 261
Sau3AI GATC 2 cut(s) 11, 252
Sau96I GGNCC 2 cut(s) 96, 161
SfcI CTRYAG 1 cut(s) 15
SinI GGWCC 2 cut(s) 96, 161
Sse9I AATT 2 cut(s) 501, 517
SsiI CCGC 9 cut(s) 36, 94, 137, 156, 159, 260, 291, 479, 512
SspMI CTAG 1 cut(s) 207
StyI CCWWGG 2 cut(s) 164, 462
TaaI ACNGT 4 cut(s) 28, 91, 242, 491
TaiI ACGT 4 cut(s) 8, 335, 416, 452
TaqI TCGA 3 cut(s) 10, 189, 410
TaqII GACCGA 1 cut(s) 113
TasI AATT 2 cut(s) 501, 517
TatI WGTACW 1 cut(s) 226
TauI GCSGC 2 cut(s) 159, 263
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 2 cut(s) 31, 496
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 274, 401
TspRI CASTG 2 cut(s) 31, 496
Tth111I GACNNNGTC 1 cut(s) 451
VpaK11BI GGWCC 2 cut(s) 96, 161
VspI ATTAAT 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 410
XspI CTAG 1 cut(s) 207
ZraI GACGTC 2 cut(s) 6, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.