Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002591

Physical Location & Seq

Genomic Coordinates Forward (+)

37874568 .. 37877691

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0266500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCTTCGCCTTTGCCTTCTTCCCTCTCTCACTTCTCACTCCTCTCCAAACCCGCACCGCCCCAAAACCACCACCTCCGCCTCCTCCTAGCCCCGACCCGACCCGCGTCTTCCGGGTTCCAATGCCGGGCCGGAACCGGGTTCTTCAACCGGCTCGGACGCCTCATAAAGGAGAAGGCCAAGAGCGACGTGGATAAGCTCTTCTCCGGGTTCTCCAAGACCCGCGACAATCTCGCCGTCATCGACGAGCTCCTCCTCTACTGGAACCTCGCCGACACCGATCGCGTCCTCGACGAGCTTGAAGAGGCTCTGCTGGTATCGGATTTTGGGCCCAAGATCACCATTAAGATTGTGGAGAGTTTGAGGGAGGATATAGTAGCTGGGAAGCTCAAGTCTGGAAGTGAAATAAAGGAGGCGTTGAAGAAGAATGTTCTGGATTTATTGACTATAGAAGGGAAAACTGAGCTTCAACTTGGATACAGGAAACCAGCTGTGGTTATGATTGTTGGGGTTAATGGAGGTGGGAAGACCACGTCTCTCGGAAAGCTGGCTTATAGATTGAAGAATGGAGGGGCAAAGGTATTGATGGCAGCAGGGGATACGTTTCGAGCTGCTGCCGGTGACCAGCTGGAGATATGGGCTGAGAGGACTGGCTGTGAGATAGTTGTGGCTGAAAAAGAGAAGGCCAAAGCAGCAACAGTTATTTCTCAGGCTGTGAAGAGAGGGAAGGAACAAGGTTATGACATTGTCTTATGTGACACCTCTGGACGTCTGCACACTAATTACAGCTTGATGGAAGAGTTGATTGCATGCAAGAAAGCTGTAGGCAAAGTCATGCCTGGTGCCCCTAATGAGATCCTACAAGTTCTGGATGGGACCACTGGCTTAAACATGCTTCCACAAGCACGAGAATTCAATGAAATTGTTGGTATAACTGGTTTGATTTTGACAAAGCTTGATGGTTCTGCAAGAGGTGGCTGTGTGGTTAGTGTGGTAAATGAGCTTGGCATCCCTGTAAAGTTTGTGGGAGTTGGTGAAAGTGTAGAAGACCTACAACCCTTTGATGCAGAGGCTTTTGTGAATGCCATATTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

365

Amino Acids

39.22

Weight (kDa)

7.59

Isoelectric Point (pI)

25.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54_N	PF02881	93 - 142	1.5e-09	SRP54-type protein, helical bundle domain
SRP54	PF00448	163 - 364	2.4e-71	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01100 AT4G01100 AT4G01100
fragaria_vesca	FvH4_5g04080 FvH4_7g16030 FvH4_7g16030 FvH4_7g16030
malus_domestica	MD06G1102400.v1.1 MD07G1145800.v1.1 MD14G1121600.v1.1
prunus_persica	Prupe.2G184000_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1
pyrus_communis	pycom01g10560 pycom06g09720 pycom07g14500
rosa_chinensis	RchiOBHm_Chr1g0358961 RchiOBHm_Chr7g0195421
rosa_laevigata	RLG00000004122 RLG00000027913
rosa_multiflora	Rmu_co7977584.1_g000001 Rmu_sc0008757.1_g000008 Rmu_sc0020160.1_g000001 Rmu_sc0037681.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260500 Rroxscaffold_4G00297510
rosa_rugosa	Rorug01G0266400 Rorug01G0266500 Rorug07G0023100
rosa_samantha	Rh1AG280000 Rh1BG246800 Rh1CG264400 Rh1DG275200 Rh7AG150600 Rh7BG152000 Rh7CG155800 Rh7DG151600
rosa_wichuraiana	Rw1G024890 Rw7G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	772
AccB1I	GGYRCC	1 cut(s)	842
AccII	CGCG	3 cut(s)	107, 225, 285
AciI	CCGC	5 cut(s)	54, 59, 79, 105, 223
AclWI	GGATC	1 cut(s)	850
AcsI	RAATTY	1 cut(s)	911
AcyI	GRCGYC	2 cut(s)	160, 769
AfiI	CCNNNNNNNGG	3 cut(s)	127, 138, 169
AgsI	TTSAA	6 cut(s)	148, 302, 421, 470, 562, 916
AjiI	CACGTC	2 cut(s)	190, 534
AjnI	CCWGG	1 cut(s)	838
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	1 cut(s)	850
AoxI	GGCC	4 cut(s)	129, 177, 329, 684
ApaI	GGGCCC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	590, 611, 614, 692
ApoI	RAATTY	1 cut(s)	911
AspS9I	GGNCC	4 cut(s)	129, 329, 330, 876
AsuC2I	CCSGG	4 cut(s)	115, 128, 139, 208
AsuHPI	GGTGA	3 cut(s)	331, 632, 1046
AvaII	GGWCC	1 cut(s)	876
BaeGI	GKGCMC	2 cut(s)	333, 847
BanI	GGYRCC	1 cut(s)	842
BanII	GRGCYC	2 cut(s)	252, 333
BauI	CACGAG	1 cut(s)	906
BbsI	GAAGAC	3 cut(s)	102, 533, 1053
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	598, 601, 602, 704
BccI	CCATC	4 cut(s)	580, 787, 866, 953
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	840
BciVI	GTATCC	2 cut(s)	470, 592
BcnI	CCSGG	4 cut(s)	115, 128, 139, 208
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	2 cut(s)	447, 822
BfuI	GTATCC	2 cut(s)	470, 592
BisI	GCNGC	4 cut(s)	591, 612, 615, 693
BlsI	GCNGC	4 cut(s)	592, 613, 616, 694
Bme1390I	CCNGG	5 cut(s)	115, 128, 139, 208, 840
Bme18I	GGWCC	1 cut(s)	876
BmgBI	CACGTC	2 cut(s)	190, 534
BmgT120I	GGNCC	4 cut(s)	129, 329, 330, 876
BmiI	GGNNCC	6 cut(s)	119, 136, 266, 331, 844, 877
BmrFI	CCNGG	5 cut(s)	115, 128, 139, 208, 840
BmsI	GCATC	2 cut(s)	1017, 1054
BoxI	GACNNNNGTC	1 cut(s)	106
BpiI	GAAGAC	3 cut(s)	102, 533, 1053
BpmI	CTGGAG	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	4 cut(s)	115, 128, 139, 208
BsaHI	GRCGYC	2 cut(s)	160, 769
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 138, 169
Bse118I	RCCGGY	2 cut(s)	150, 617
Bse1I	ACTGG	4 cut(s)	266, 655, 886, 940
BseBI	CCWGG	1 cut(s)	840
BseGI	GGATG	2 cut(s)	877, 1008
BseLI	CCNNNNNNNGG	3 cut(s)	127, 138, 169
BseMII	CTCAG	3 cut(s)	453, 633, 722
BseNI	ACTGG	4 cut(s)	266, 655, 886, 940
BseRI	GAGGAG	4 cut(s)	32, 74, 242, 245
BseSI	GKGCMC	2 cut(s)	333, 847
BseXI	GCAGC	4 cut(s)	598, 601, 602, 704
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	758
Bsh1236I	CGCG	3 cut(s)	107, 225, 285
Bsh1285I	CGRYCG	1 cut(s)	283
BshFI	GGCC	4 cut(s)	131, 179, 331, 686
BshNI	GGYRCC	1 cut(s)	842
BsiEI	CGRYCG	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	7 cut(s)	114, 127, 132, 138, 151, 207, 618
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	3 cut(s)	127, 138, 169
BsmAI	GTCTC	1 cut(s)	540
BsmBI	CGTCTC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	889
BsmI	GAATGC	1 cut(s)	1087
BsnI	GGCC	4 cut(s)	131, 179, 331, 686
Bsp120I	GGGCCC	1 cut(s)	329
Bsp1286I	GDGCHC	3 cut(s)	252, 333, 847
Bsp143I	GATC	3 cut(s)	280, 336, 855
BspACI	CCGC	5 cut(s)	54, 59, 79, 105, 223
BspANI	GGCC	4 cut(s)	131, 179, 331, 686
BspCNI	CTCAG	3 cut(s)	454, 634, 721
BspFNI	CGCG	3 cut(s)	107, 225, 285
BspLI	GGNNCC	6 cut(s)	119, 136, 266, 331, 844, 877
BspPI	GGATC	1 cut(s)	850
BspQI	GCTCTTC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	842
BsrFI	RCCGGY	2 cut(s)	150, 617
BsrI	ACTGG	4 cut(s)	266, 655, 886, 940
BssAI	RCCGGY	2 cut(s)	150, 617
BssMI	GATC	3 cut(s)	280, 336, 855
BssNI	GRCGYC	2 cut(s)	160, 769
BssSI	CACGAG	1 cut(s)	906
Bst2BI	CACGAG	1 cut(s)	906
Bst2UI	CCWGG	1 cut(s)	840
Bst4CI	ACNGT	1 cut(s)	700
Bst6I	CTCTTC	4 cut(s)	206, 297, 713, 792
BstACI	GRCGYC	2 cut(s)	160, 769
BstC8I	GCNNGC	2 cut(s)	549, 811
BstDEI	CTNAG	3 cut(s)	462, 642, 708
BstEII	GGTNACC	1 cut(s)	620
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	877, 1008
BstFNI	CGCG	3 cut(s)	107, 225, 285
BstKTI	GATC	3 cut(s)	283, 339, 858
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	3 cut(s)	280, 336, 855
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNI	CCWGG	1 cut(s)	840
BstNSI	RCATGY	2 cut(s)	813, 895
BstPAI	GACNNNNGTC	1 cut(s)	106
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	5 cut(s)	113, 126, 137, 206, 838
BstSFI	CTRYAG	2 cut(s)	447, 822
BstSLI	GKGCMC	2 cut(s)	333, 847
BstUI	CGCG	3 cut(s)	107, 225, 285
BstV1I	GCAGC	4 cut(s)	598, 601, 602, 704
BstV2I	GAAGAC	3 cut(s)	102, 533, 1053
BstX2I	RGATCY	1 cut(s)	855
BstYI	RGATCY	1 cut(s)	855
BsuI	GTATCC	2 cut(s)	470, 592
BsuRI	GGCC	4 cut(s)	131, 179, 331, 686
BtrI	CACGTC	2 cut(s)	190, 534
BtsCI	GGATG	2 cut(s)	877, 1008
BtsIMutI	CAGTG	1 cut(s)	879
Cac8I	GCNNGC	2 cut(s)	549, 811
Cfr10I	RCCGGY	2 cut(s)	150, 617
Cfr13I	GGNCC	4 cut(s)	129, 329, 330, 876
CseI	GACGC	3 cut(s)	96, 168, 274
CviAII	CATG	3 cut(s)	810, 835, 892
DdeI	CTNAG	3 cut(s)	462, 642, 708
DpnI	GATC	3 cut(s)	282, 338, 857
DpnII	GATC	3 cut(s)	280, 336, 855
Eam1104I	CTCTTC	4 cut(s)	206, 297, 713, 792
EarI	CTCTTC	4 cut(s)	206, 297, 713, 792
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	2 cut(s)	252, 333
Eco47I	GGWCC	1 cut(s)	876
Eco53kI	GAGCTC	1 cut(s)	250
Eco91I	GGTNACC	1 cut(s)	620
EcoICRI	GAGCTC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	620
EcoRI	GAATTC	1 cut(s)	911
EcoRII	CCWGG	1 cut(s)	838
EcoT38I	GRGCYC	2 cut(s)	252, 333
Esp3I	CGTCTC	1 cut(s)	540
FaeI	CATG	3 cut(s)	813, 838, 895
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	3 cut(s)	809, 834, 891
FauI	CCCGC	3 cut(s)	61, 112, 230
Fnu4HI	GCNGC	4 cut(s)	591, 612, 615, 693
FokI	GGATG	2 cut(s)	884, 995
FriOI	GRGCYC	2 cut(s)	252, 333
Fsp4HI	GCNGC	4 cut(s)	591, 612, 615, 693
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	4 cut(s)	591, 612, 615, 693
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	4 cut(s)	131, 179, 331, 686
HapII	CCGG	7 cut(s)	114, 127, 132, 138, 151, 207, 618
HgaI	GACGC	3 cut(s)	96, 168, 274
Hin1I	GRCGYC	2 cut(s)	160, 769
Hin1II	CATG	3 cut(s)	813, 838, 895
HindIII	AAGCTT	1 cut(s)	953
HpaII	CCGG	7 cut(s)	114, 127, 132, 138, 151, 207, 618
HphI	GGTGA	3 cut(s)	331, 632, 1046
Hpy188I	TCNGA	3 cut(s)	158, 322, 542
Hpy188III	TCNNGA	4 cut(s)	396, 434, 765, 869
Hpy99I	CGWCG	3 cut(s)	191, 248, 296
HpyAV	CCTTC	5 cut(s)	27, 169, 446, 676, 721
HpyCH4III	ACNGT	1 cut(s)	700
HpyCH4IV	ACGT	4 cut(s)	189, 533, 602, 769
HpyCH4V	TGCA	5 cut(s)	775, 809, 813, 968, 1067
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	3 cut(s)	462, 642, 708
HpySE526I	ACGT	4 cut(s)	189, 533, 602, 769
Hsp92I	GRCGYC	2 cut(s)	160, 769
Hsp92II	CATG	3 cut(s)	813, 838, 895
Kzo9I	GATC	3 cut(s)	280, 336, 855
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	4 cut(s)	598, 601, 602, 704
LweI	GCATC	2 cut(s)	1017, 1054
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	4 cut(s)	189, 533, 602, 769
MaeIII	GTNAC	2 cut(s)	620, 755
MalI	GATC	3 cut(s)	282, 338, 857
MboI	GATC	3 cut(s)	280, 336, 855
MflI	RGATCY	1 cut(s)	855
MhlI	GDGCHC	3 cut(s)	252, 333, 847
MluCI	AATT	3 cut(s)	781, 911, 921
MseI	TTAA	3 cut(s)	345, 513, 887
MspA1I	CMGCKG	2 cut(s)	491, 628
MspI	CCGG	7 cut(s)	114, 127, 132, 138, 151, 207, 618
MspR9I	CCNGG	5 cut(s)	115, 128, 139, 208, 840
Mva1269I	GAATGC	1 cut(s)	1087
MvaI	CCWGG	1 cut(s)	840
MvnI	CGCG	3 cut(s)	107, 225, 285
MwoI	GCNNNNNNNGC	1 cut(s)	692
NciI	CCSGG	4 cut(s)	115, 128, 139, 208
NdeII	GATC	3 cut(s)	280, 336, 855
NlaIII	CATG	3 cut(s)	813, 838, 895
NlaIV	GGNNCC	6 cut(s)	119, 136, 266, 331, 844, 877
NmuCI	GTSAC	2 cut(s)	620, 755
NspI	RCATGY	2 cut(s)	813, 895
PaeI	GCATGC	1 cut(s)	813
PciSI	GCTCTTC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 276
PctI	GAATGC	1 cut(s)	1087
PflFI	GACNNNGTC	2 cut(s)	532, 746
PkrI	GCNGC	4 cut(s)	592, 613, 616, 694
Ple19I	CGATCG	1 cut(s)	283
PshAI	GACNNNNGTC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	838
PspEI	GGTNACC	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	838
PspN4I	GGNNCC	6 cut(s)	119, 136, 266, 331, 844, 877
PspOMI	GGGCCC	1 cut(s)	329
PspPI	GGNCC	4 cut(s)	129, 329, 330, 876
PsuI	RGATCY	1 cut(s)	855
PsyI	GACNNNGTC	2 cut(s)	532, 746
PvuI	CGATCG	1 cut(s)	283
PvuII	CAGCTG	2 cut(s)	491, 628
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	3 cut(s)	345, 513, 887
SatI	GCNGC	4 cut(s)	591, 612, 615, 693
Sau3AI	GATC	3 cut(s)	280, 336, 855
Sau96I	GGNCC	4 cut(s)	129, 329, 330, 876
ScrFI	CCNGG	5 cut(s)	115, 128, 139, 208, 840
SduI	GDGCHC	3 cut(s)	252, 333, 847
SfaNI	GCATC	2 cut(s)	1017, 1054
SfcI	CTRYAG	2 cut(s)	447, 822
SinI	GGWCC	1 cut(s)	876
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SphI	GCATGC	1 cut(s)	813
Sse9I	AATT	3 cut(s)	781, 911, 921
SsiI	CCGC	5 cut(s)	54, 59, 79, 105, 223
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	5 cut(s)	113, 126, 137, 206, 838
TaaI	ACNGT	1 cut(s)	700
TaiI	ACGT	4 cut(s)	192, 536, 605, 772
TaqI	TCGA	3 cut(s)	243, 291, 607
TasI	AATT	3 cut(s)	781, 911, 921
Tru1I	TTAA	3 cut(s)	345, 513, 887
Tru9I	TTAA	3 cut(s)	345, 513, 887
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	2 cut(s)	620, 755
TseI	GCWGC	4 cut(s)	590, 611, 614, 692
Tsp45I	GTSAC	2 cut(s)	620, 755
TspDTI	ATGAA	2 cut(s)	933, 1083
TspRI	CASTG	1 cut(s)	886
Tth111I	GACNNNGTC	2 cut(s)	532, 746
VpaK11BI	GGWCC	1 cut(s)	876
XagI	CCTNNNNNAGG	1 cut(s)	167
XapI	RAATTY	1 cut(s)	911
XceI	RCATGY	2 cut(s)	813, 895
XcmI	CCANNNNNNNNNTGG	2 cut(s)	187, 349
XspI	CTAG	1 cut(s)	89
ZraI	GACGTC	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.