Rmu_sc0037681.1_g000002

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037681.1
Physical Location & Seq
Forward (+)
6052 .. 12001
5950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037681.1_g000002.1.cds

Sequence Viewer

Length: 1239 bp
atgggcccaccacgtttcaacaaaactttaaacaatgaactagacagtaaagaaaacagactgacaatgacaacaaaaaggggtattggtaggggttttgataagatggccgataaatcgccggaaacactcctcgatcggatcggcgttccggcacgcctagatttccggcgaggcgctgaggttcttctgcctcaatctcgctctctttctttctctttgtggggctttgaaatgtcgtcggaagacgtggccggaaagaggacgagcgagacggcggtatcgacgattgtgaacctggcggaggaggcgaagctcgccagcgaaggagtcaaggcgcctagccacgccgcgctccttagcatcgctaagtctctcgtcgccggaggagtcgccggaggagtgtcaagaactgctgttgctcccttggaaagactgaaaattttgctccaggttcaaaatcctcatagtattaaatacaatgggacagttcagggcttgaagtatatatggagaactgagggtctcagaggcttgtttaagggcaatggaactaattgtgctcgcatagtcccaaattcagcagtcaagttctttagctatgaagaagcatctaagggtatcctatggttttatcgacagcaaactggaaatgaaaatgctcaactcacacctcttttgcgcctcggagctggtgcatgtgctggaattattgcaatgtcagcaacttacccgatggacatggtacgagggcgtctaactgtgcagacggaaaactctcctcggcattataggggaatatttcatgctctttcaactgtctttcgggaagagggacctagggctctgtacaaaggctggctaccttctgtcattggagttataccatatgttggtctccattttgccgtttatgaatctctgacagattggttgatcaaaactagacctttcagactagttcaagacactgagttgagtataactacaaagcttgcatgtggggctgcagctggaactgttggccagacggttgcttaccctcttgatgtcgttcggcgaagaatgcagatggtaggctggaagaatgccgcttcggttgtcactggggatgggaagagcaaagcagcccttgaatatactggtatggttgatacattcaggaaaacagttcgtcatgaggggtttagggcactgtacaagggtttggtccccaattctgttaaggtcagtatttaa

Protein Analysis

412

Amino Acids

45.07

Weight (kDa)

9.95

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 337
AccB7I CCANNNNNTGG 1 cut(s) 893
AccII CGCG 1 cut(s) 353
AciI CCGC 4 cut(s) 278, 302, 351, 1092
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 3 cut(s) 108, 252, 1024
AcsI RAATTY 2 cut(s) 441, 577
AcyI GRCGYC 2 cut(s) 338, 754
AfaI GTAC 3 cut(s) 747, 851, 1199
AfiI CCNNNNNNNGG 3 cut(s) 261, 304, 893
AgsI TTSAA 7 cut(s) 19, 233, 458, 502, 816, 965, 1136
AhlI ACTAGT 1 cut(s) 958
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 2 cut(s) 297, 450
AluBI AGCT 5 cut(s) 316, 600, 692, 994, 1013
AluI AGCT 5 cut(s) 316, 600, 692, 994, 1013
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 4 cut(s) 266, 378, 530, 902
AlwI GGATC 1 cut(s) 149
AoxI GGCC 4 cut(s) 4, 108, 252, 1024
ApaI GGGCCC 1 cut(s) 8
ApeKI GCWGC 3 cut(s) 1007, 1010, 1127
ApoI RAATTY 2 cut(s) 441, 577
AspA2I CCTAGG 1 cut(s) 839
AspLEI GCGC 4 cut(s) 179, 340, 355, 684
AspS9I GGNCC 4 cut(s) 4, 5, 836, 1210
AvaII GGWCC 2 cut(s) 836, 1210
AvrII CCTAGG 1 cut(s) 839
BaeGI GKGCMC 2 cut(s) 8, 1195
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BalI TGGCCA 1 cut(s) 1026
BanI GGYRCC 1 cut(s) 337
BanII GRGCYC 2 cut(s) 8, 847
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 565
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 994, 1022, 1139
BccI CCATC 4 cut(s) 100, 730, 1066, 1106
BceAI ACGGC 2 cut(s) 291, 893
BciT130I CCWGG 2 cut(s) 299, 452
BciVI GTATCC 1 cut(s) 632
BclI TGATCA 1 cut(s) 936
BcoDI GTCTC 4 cut(s) 266, 378, 530, 902
BcuI ACTAGT 1 cut(s) 958
BfaI CTAG 6 cut(s) 41, 161, 342, 840, 945, 959
BfmI CTRYAG 1 cut(s) 1008
BfoI RGCGCY 2 cut(s) 180, 341
BfuI GTATCC 1 cut(s) 632
BisI GCNGC 5 cut(s) 351, 1008, 1011, 1092, 1128
BlnI CCTAGG 1 cut(s) 839
BlsI GCNGC 5 cut(s) 352, 1009, 1012, 1093, 1129
Bme1390I CCNGG 2 cut(s) 299, 452
Bme18I GGWCC 2 cut(s) 836, 1210
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 4 cut(s) 4, 5, 836, 1210
BmiI GGNNCC 4 cut(s) 6, 339, 837, 1212
BmrFI CCNGG 2 cut(s) 299, 452
BmrI ACTGGG 1 cut(s) 1116
BmsI GCATC 2 cut(s) 372, 620
BmuI ACTGGG 1 cut(s) 1116
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 434
Bpu10I CCTNAGC 2 cut(s) 180, 359
BsaHI GRCGYC 2 cut(s) 338, 754
BsaI GGTCTC 2 cut(s) 530, 902
BsaJI CCNNGG 4 cut(s) 426, 685, 782, 839
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 304, 893
Bse1I ACTGG 3 cut(s) 652, 1111, 1147
Bse3DI GCAATG 2 cut(s) 553, 723
BseBI CCWGG 2 cut(s) 299, 452
BseDI CCNNGG 4 cut(s) 426, 685, 782, 839
BseGI GGATG 1 cut(s) 1117
BseLI CCNNNNNNNGG 3 cut(s) 261, 304, 893
BseMI GCAATG 2 cut(s) 553, 723
BseMII CTCAG 4 cut(s) 171, 510, 541, 963
BseNI ACTGG 3 cut(s) 652, 1111, 1147
BseRI GAGGAG 5 cut(s) 122, 320, 402, 414, 771
BseSI GKGCMC 2 cut(s) 8, 1195
BseXI GCAGC 3 cut(s) 994, 1022, 1139
BsgI GTGCAG 1 cut(s) 785
Bsh1236I CGCG 1 cut(s) 353
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 4 cut(s) 6, 110, 254, 1026
BshNI GGYRCC 1 cut(s) 337
BsiEI CGRYCG 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 565
BsiSI CCGG 6 cut(s) 122, 152, 169, 255, 384, 396
BslFI GGGAC 4 cut(s) 499, 557, 849, 1196
BslI CCNNNNNNNGG 3 cut(s) 261, 304, 893
BsmAI GTCTC 4 cut(s) 266, 378, 530, 902
BsmBI CGTCTC 1 cut(s) 266
BsmFI GGGAC 4 cut(s) 499, 557, 849, 1196
BsmI GAATGC 2 cut(s) 1071, 1093
BsnI GGCC 4 cut(s) 6, 110, 254, 1026
Bso31I GGTCTC 2 cut(s) 530, 902
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 4 cut(s) 8, 565, 847, 1195
Bsp1407I TGTACA 2 cut(s) 849, 1197
Bsp143I GATC 3 cut(s) 136, 141, 936
BspACI CCGC 4 cut(s) 278, 302, 351, 1092
BspANI GGCC 4 cut(s) 6, 110, 254, 1026
BspCNI CTCAG 4 cut(s) 172, 511, 540, 964
BspFNI CGCG 1 cut(s) 353
BspHI TCATGA 1 cut(s) 1177
BspLI GGNNCC 4 cut(s) 6, 339, 837, 1212
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 1 cut(s) 149
BspQI GCTCTTC 1 cut(s) 1112
BspT107I GGYRCC 1 cut(s) 337
BspTNI GGTCTC 2 cut(s) 530, 902
BsrDI GCAATG 2 cut(s) 553, 723
BsrGI TGTACA 2 cut(s) 849, 1197
BsrI ACTGG 3 cut(s) 652, 1111, 1147
BssECI CCNNGG 4 cut(s) 426, 685, 782, 839
BssMI GATC 3 cut(s) 136, 141, 936
BssNI GRCGYC 2 cut(s) 338, 754
BssT1I CCWWGG 2 cut(s) 426, 839
Bst2UI CCWGG 2 cut(s) 299, 452
Bst4CI ACNGT 8 cut(s) 47, 490, 763, 820, 1021, 1033, 1171, 1197
Bst6I CTCTTC 2 cut(s) 825, 1112
BstACI GRCGYC 2 cut(s) 338, 754
BstAUI TGTACA 2 cut(s) 849, 1197
BstC8I GCNNGC 6 cut(s) 157, 318, 322, 565, 860, 996
BstDEI CTNAG 7 cut(s) 180, 359, 369, 519, 527, 615, 972
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 1117
BstFNI CGCG 1 cut(s) 353
BstH2I RGCGCY 2 cut(s) 180, 341
BstHHI GCGC 4 cut(s) 179, 340, 355, 684
BstKTI GATC 3 cut(s) 139, 144, 939
BstMAI GTCTC 4 cut(s) 266, 378, 530, 902
BstMBI GATC 3 cut(s) 136, 141, 936
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 5 cut(s) 308, 317, 722, 1004, 1066
BstNI CCWGG 2 cut(s) 299, 452
BstNSI RCATGY 2 cut(s) 702, 1002
BstSCI CCNGG 2 cut(s) 297, 450
BstSFI CTRYAG 1 cut(s) 1008
BstSLI GKGCMC 2 cut(s) 8, 1195
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 3 cut(s) 994, 1022, 1139
BstV2I GAAGAC 1 cut(s) 252
BsuI GTATCC 1 cut(s) 632
BsuRI GGCC 4 cut(s) 6, 110, 254, 1026
BtgZI GCGATG 1 cut(s) 349
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 1117
BtsIMutI CAGTG 3 cut(s) 969, 1104, 1193
Cac8I GCNNGC 6 cut(s) 157, 318, 322, 565, 860, 996
CciI TCATGA 1 cut(s) 1177
CfoI GCGC 4 cut(s) 179, 340, 355, 684
Cfr13I GGNCC 4 cut(s) 4, 5, 836, 1210
CseI GACGC 1 cut(s) 743
Csp6I GTAC 3 cut(s) 746, 850, 1198
CviAII CATG 5 cut(s) 699, 742, 806, 999, 1178
CviQI GTAC 3 cut(s) 746, 850, 1198
DdeI CTNAG 7 cut(s) 180, 359, 369, 519, 527, 615, 972
DinI GGCGCC 1 cut(s) 339
DpnI GATC 3 cut(s) 138, 143, 938
DpnII GATC 3 cut(s) 136, 141, 936
DraI TTTAAA 1 cut(s) 30
EaeI YGGCCR 3 cut(s) 108, 252, 1024
Eam1104I CTCTTC 2 cut(s) 825, 1112
EarI CTCTTC 2 cut(s) 825, 1112
EciI GGCGGA 1 cut(s) 317
Eco130I CCWWGG 2 cut(s) 426, 839
Eco24I GRGCYC 2 cut(s) 8, 847
Eco31I GGTCTC 2 cut(s) 530, 902
Eco47I GGWCC 2 cut(s) 836, 1210
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 836
EcoRII CCWGG 2 cut(s) 297, 450
EcoT14I CCWWGG 2 cut(s) 426, 839
EcoT38I GRGCYC 2 cut(s) 8, 847
EgeI GGCGCC 1 cut(s) 339
EheI GGCGCC 1 cut(s) 339
ErhI CCWWGG 2 cut(s) 426, 839
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 5 cut(s) 702, 745, 809, 1002, 1181
FalI AAGNNNNNCTT 2 cut(s) 1116, 1148
FaqI GGGAC 4 cut(s) 499, 557, 849, 1196
FatI CATG 5 cut(s) 698, 741, 805, 998, 1177
FauNDI CATATG 1 cut(s) 889
FbaI TGATCA 1 cut(s) 936
Fnu4HI GCNGC 5 cut(s) 351, 1008, 1011, 1092, 1128
FokI GGATG 1 cut(s) 1124
FriOI GRGCYC 2 cut(s) 8, 847
Fsp4HI GCNGC 5 cut(s) 351, 1008, 1011, 1092, 1128
FspBI CTAG 6 cut(s) 41, 161, 342, 840, 945, 959
GlaI GCGC 4 cut(s) 178, 339, 354, 683
GluI GCNGC 5 cut(s) 351, 1008, 1011, 1092, 1128
GsuI CTGGAG 1 cut(s) 434
HaeII RGCGCY 2 cut(s) 180, 341
HaeIII GGCC 4 cut(s) 6, 110, 254, 1026
HapII CCGG 6 cut(s) 122, 152, 169, 255, 384, 396
HgaI GACGC 1 cut(s) 743
HhaI GCGC 4 cut(s) 179, 340, 355, 684
Hin1I GRCGYC 2 cut(s) 338, 754
Hin1II CATG 5 cut(s) 702, 745, 809, 1002, 1181
Hin6I GCGC 4 cut(s) 177, 338, 353, 682
HinP1I GCGC 4 cut(s) 177, 338, 353, 682
HindIII AAGCTT 1 cut(s) 992
HinfI GANTC 3 cut(s) 330, 390, 917
HpaII CCGG 6 cut(s) 122, 152, 169, 255, 384, 396
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 6 cut(s) 141, 244, 530, 689, 924, 956
Hpy188III TCNNGA 6 cut(s) 408, 827, 965, 1046, 1162, 1178
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 3 cut(s) 244, 289, 383
HpyAV CCTTC 2 cut(s) 320, 876
HpyCH4III ACNGT 8 cut(s) 47, 490, 763, 820, 1021, 1033, 1171, 1197
HpyCH4IV ACGT 2 cut(s) 13, 249
HpyCH4V TGCA 6 cut(s) 698, 716, 766, 998, 1010, 1069
HpyF10VI GCNNNNNNNGC 5 cut(s) 308, 317, 722, 1004, 1066
HpyF3I CTNAG 7 cut(s) 180, 359, 369, 519, 527, 615, 972
HpySE526I ACGT 2 cut(s) 13, 249
Hsp92I GRCGYC 2 cut(s) 338, 754
Hsp92II CATG 5 cut(s) 702, 745, 809, 1002, 1181
HspAI GCGC 4 cut(s) 177, 338, 353, 682
KasI GGCGCC 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 936
Kzo9I GATC 3 cut(s) 136, 141, 936
LguI GCTCTTC 1 cut(s) 1112
LmnI GCTCC 4 cut(s) 360, 427, 453, 689
Lsp1109I GCAGC 3 cut(s) 994, 1022, 1139
LweI GCATC 2 cut(s) 372, 620
MaeI CTAG 6 cut(s) 41, 161, 342, 840, 945, 959
MaeII ACGT 2 cut(s) 13, 249
MaeIII GTNAC 1 cut(s) 1102
MalI GATC 3 cut(s) 138, 143, 938
MboI GATC 3 cut(s) 136, 141, 936
MboII GAAGA 7 cut(s) 179, 257, 617, 842, 1074, 1096, 1129
MhlI GDGCHC 4 cut(s) 8, 565, 847, 1195
MlsI TGGCCA 1 cut(s) 1026
MluCI AATT 5 cut(s) 441, 556, 577, 708, 1216
MluNI TGGCCA 1 cut(s) 1026
Mly113I GGCGCC 1 cut(s) 338
MlyI GAGTC 2 cut(s) 339, 399
MmeI TCCRAC 1 cut(s) 222
Mox20I TGGCCA 1 cut(s) 1026
MscI TGGCCA 1 cut(s) 1026
MseI TTAA 5 cut(s) 29, 474, 540, 1224, 1237
Msp20I TGGCCA 1 cut(s) 1026
MspA1I CMGCKG 1 cut(s) 1013
MspI CCGG 6 cut(s) 122, 152, 169, 255, 384, 396
MspR9I CCNGG 2 cut(s) 299, 452
Mva1269I GAATGC 2 cut(s) 1071, 1093
MvaI CCWGG 2 cut(s) 299, 452
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 5 cut(s) 308, 317, 722, 1004, 1066
NarI GGCGCC 1 cut(s) 338
NdeI CATATG 1 cut(s) 889
NdeII GATC 3 cut(s) 136, 141, 936
NlaIII CATG 5 cut(s) 702, 745, 809, 1002, 1181
NlaIV GGNNCC 4 cut(s) 6, 339, 837, 1212
NmeAIII GCCGAG 1 cut(s) 763
NmuCI GTSAC 1 cut(s) 1102
NspI RCATGY 2 cut(s) 702, 1002
PagI TCATGA 1 cut(s) 1177
PciSI GCTCTTC 1 cut(s) 1112
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PctI GAATGC 2 cut(s) 1071, 1093
PfeI GAWTC 1 cut(s) 917
PflMI CCANNNNNTGG 1 cut(s) 893
PkrI GCNGC 5 cut(s) 352, 1009, 1012, 1093, 1129
Ple19I CGATCG 1 cut(s) 139
PleI GAGTC 2 cut(s) 338, 398
PluTI GGCGCC 1 cut(s) 341
PpsI GAGTC 2 cut(s) 338, 398
PpuMI RGGWCCY 1 cut(s) 836
Psp5II RGGWCCY 1 cut(s) 836
Psp6I CCWGG 2 cut(s) 297, 450
PspGI CCWGG 2 cut(s) 297, 450
PspN4I GGNNCC 4 cut(s) 6, 339, 837, 1212
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 4 cut(s) 4, 5, 836, 1210
PspPPI RGGWCCY 1 cut(s) 836
PstI CTGCAG 1 cut(s) 1012
PvuI CGATCG 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 1013
RsaI GTAC 3 cut(s) 747, 851, 1199
RsaNI GTAC 3 cut(s) 746, 850, 1198
SapI GCTCTTC 1 cut(s) 1112
SaqAI TTAA 5 cut(s) 29, 474, 540, 1224, 1237
SatI GCNGC 5 cut(s) 351, 1008, 1011, 1092, 1128
Sau3AI GATC 3 cut(s) 136, 141, 936
Sau96I GGNCC 4 cut(s) 4, 5, 836, 1210
SchI GAGTC 2 cut(s) 339, 399
ScrFI CCNGG 2 cut(s) 299, 452
SduI GDGCHC 4 cut(s) 8, 565, 847, 1195
SfaNI GCATC 2 cut(s) 372, 620
SfcI CTRYAG 1 cut(s) 1008
SfoI GGCGCC 1 cut(s) 339
SinI GGWCC 2 cut(s) 836, 1210
SpeI ACTAGT 1 cut(s) 958
Sse9I AATT 5 cut(s) 441, 556, 577, 708, 1216
SsiI CCGC 4 cut(s) 278, 302, 351, 1092
SspDI GGCGCC 1 cut(s) 337
SspI AATATT 1 cut(s) 801
SspMI CTAG 6 cut(s) 41, 161, 342, 840, 945, 959
StyD4I CCNGG 2 cut(s) 297, 450
StyI CCWWGG 2 cut(s) 426, 839
TaaI ACNGT 8 cut(s) 47, 490, 763, 820, 1021, 1033, 1171, 1197
TaiI ACGT 2 cut(s) 16, 252
TaqI TCGA 3 cut(s) 135, 284, 637
TasI AATT 5 cut(s) 441, 556, 577, 708, 1216
TatI WGTACW 2 cut(s) 849, 1197
TauI GCSGC 2 cut(s) 353, 1094
TfiI GAWTC 1 cut(s) 917
Tru1I TTAA 5 cut(s) 29, 474, 540, 1224, 1237
Tru9I TTAA 5 cut(s) 29, 474, 540, 1224, 1237
TscAI CASTG 3 cut(s) 976, 1111, 1200
TseFI GTSAC 1 cut(s) 1102
TseI GCWGC 3 cut(s) 1007, 1010, 1127
Tsp45I GTSAC 1 cut(s) 1102
TspDTI ATGAA 5 cut(s) 51, 618, 669, 794, 930
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 3 cut(s) 976, 1111, 1200
Van91I CCANNNNNTGG 1 cut(s) 893
VpaK11BI GGWCC 2 cut(s) 836, 1210
XagI CCTNNNNNAGG 1 cut(s) 302
XapI RAATTY 2 cut(s) 441, 577
XceI RCATGY 2 cut(s) 702, 1002
XmaJI CCTAGG 1 cut(s) 839
XspI CTAG 6 cut(s) 41, 161, 342, 840, 945, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.