Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002591

Physical Location & Seq

Genomic Coordinates Reverse (-)

13783611 .. 13787346

Gene Structure 3736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTTCGGAGGATGTGAAACGAAGCGAAAGGGCTGTCTCGACGATCGTGAATCTGGCGGAGGAGGCTAAGCTGGCCAGAGAGGGCGTCGTCAAGGCTCCTAGCCTCGCCGTTCTCAGCGTCTGCAAGTCTCTCGTCGCCGGCGGTGTCGCCGGTGGAGTGTCTCGAACAGCTGTTGCGCCATTGGAACGAATGAAGATATTGCTCCAGGTCCAAAATCCCCATAACATAAAGTACAGTGGAACAGTACAAGGCCTGAAATATATCTGGAGAACTGAGGGTTTCCGAGGACTGTTTATAGGAAATGGTACTAATTGTGCTCGGATTGTCCCCAATTCGGCTGTCAAGTTCTTCAGCTACGAGCAGGCTTCTAAGGGAATATTATGGATGTATCGGGAGAAAACTGGCAACGAAGATGCTCAGCTGACTCCTCTCCTACGACTTGGAGCTGGAGCATGTGCTGGAATTATTGCTATGTCCGCAACTTACCCAATGGACATGGTACGAGGAAGGATTACTGTACAGACAGAGGCGTCTCCCTATCAGTATAGGGGAATGTTCCATGCTCTATCAACTGTGCTTCGGGAAGAGGGTCCACGTGCTTTGTACAAGGGCTGGCTTCCTTCTGTTATTGGAGTTGTTCCGTATGTGGGGCTCAACTTTGCTGTGTATGAATCCCTAAAGGATTGGTTAATTAAAAGTAGACCATTTGGACTTGTCCAAGATACAGATTTGAGTGTAACCACACGATTGGCATGTGGGGCTGCTGCTGGAACTGTCGGGCAGACTGTTGCATACCCACTTGATGTCATCCGTCGAAGAATGCAGATGGTTGGTTGGAGTCATGCTGCTTCTGTTGTTGCTGGTTGTCCCATCCATTGCACTTGCATTTGTGTCGTACGAGATGGTGAAGGACATTTTAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

310

Amino Acids

33.47

Weight (kDa)

9.43

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	39 - 126	1.9e-23	Mitochondrial carrier protein
Mito_carr	PF00153	142 - 234	6.3e-28	Mitochondrial carrier protein
Mito_carr	PF00153	245 - 293	2.2e-08	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01100 AT4G01100 AT4G01100
fragaria_vesca	FvH4_5g04080 FvH4_7g16030 FvH4_7g16030 FvH4_7g16030
malus_domestica	MD06G1102400.v1.1 MD07G1145800.v1.1 MD14G1121600.v1.1
prunus_persica	Prupe.2G184000_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1
pyrus_communis	pycom01g10560 pycom06g09720 pycom07g14500
rosa_chinensis	RchiOBHm_Chr1g0358961 RchiOBHm_Chr7g0195421
rosa_laevigata	RLG00000004122 RLG00000027913
rosa_multiflora	Rmu_co7977584.1_g000001 Rmu_sc0008757.1_g000008 Rmu_sc0020160.1_g000001 Rmu_sc0037681.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260500 Rroxscaffold_4G00297510
rosa_rugosa	Rorug01G0266400 Rorug01G0266500 Rorug07G0023100
rosa_samantha	Rh1AG280000 Rh1BG246800 Rh1CG264400 Rh1DG275200 Rh7AG150600 Rh7BG152000 Rh7CG155800 Rh7DG151600
rosa_wichuraiana	Rw1G024890 Rw7G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	532
AccI	GTMKAC	1 cut(s)	703
AciI	CCGC	3 cut(s)	59, 144, 480
AcoI	YGGCCR	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	337
AcvI	CACGTG	1 cut(s)	599
AcyI	GRCGYC	2 cut(s)	87, 533
AfaI	GTAC	7 cut(s)	236, 249, 310, 504, 522, 608, 900
AfiI	CCNNNNNNNGG	2 cut(s)	337, 650
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	5 cut(s)	73, 173, 357, 424, 449
AluI	AGCT	5 cut(s)	73, 173, 357, 424, 449
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	4 cut(s)	43, 135, 168, 540
AlwNI	CAGNNNCTG	1 cut(s)	123
AoxI	GGCC	2 cut(s)	75, 253
ApeKI	GCWGC	3 cut(s)	764, 767, 848
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	211, 593
AsuHPI	GGTGA	1 cut(s)	920
AvaII	GGWCC	2 cut(s)	211, 593
BalI	TGGCCA	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	657
BbrPI	CACGTG	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	3 cut(s)	751, 754, 835
BccI	CCATC	3 cut(s)	823, 881, 899
BceAI	ACGGC	1 cut(s)	95
BcgI	CGANNNNNNTGC	4 cut(s)	115, 149, 877, 911
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	4 cut(s)	43, 135, 168, 540
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	3 cut(s)	765, 768, 849
BlpI	GCTNAGC	2 cut(s)	69, 420
BlsI	GCNGC	3 cut(s)	766, 769, 850
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	2 cut(s)	211, 593
BmgT120I	GGNCC	2 cut(s)	211, 593
BmiI	GGNNCC	2 cut(s)	99, 594
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	406
BpmI	CTGGAG	3 cut(s)	191, 289, 471
Bpu1102I	GCTNAGC	2 cut(s)	69, 420
BsaAI	YACGTR	1 cut(s)	599
BsaHI	GRCGYC	2 cut(s)	87, 533
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 650
Bse118I	RCCGGY	2 cut(s)	140, 152
Bse1I	ACTGG	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	877
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	4 cut(s)	19, 393, 810, 873
BseLI	CCNNNNNNNGG	2 cut(s)	337, 650
BseMI	GCAATG	1 cut(s)	877
BseMII	CTCAG	3 cut(s)	130, 267, 434
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	2 cut(s)	77, 420
BseXI	GCAGC	3 cut(s)	751, 754, 835
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	77, 255
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	141, 153
BsiWI	CGTACG	1 cut(s)	898
BslFI	GGGAC	2 cut(s)	314, 855
BslI	CCNNNNNNNGG	2 cut(s)	337, 650
BsmAI	GTCTC	4 cut(s)	43, 135, 168, 540
BsmBI	CGTCTC	1 cut(s)	540
BsmFI	GGGAC	2 cut(s)	314, 855
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	2 cut(s)	77, 255
Bsp1286I	GDGCHC	2 cut(s)	322, 657
Bsp1407I	TGTACA	2 cut(s)	520, 606
Bsp143I	GATC	1 cut(s)	45
Bsp1720I	GCTNAGC	2 cut(s)	69, 420
BspACI	CCGC	3 cut(s)	59, 144, 480
BspANI	GGCC	2 cut(s)	77, 255
BspCNI	CTCAG	3 cut(s)	129, 268, 433
BspLI	GGNNCC	2 cut(s)	99, 594
BsrDI	GCAATG	1 cut(s)	877
BsrFI	RCCGGY	2 cut(s)	140, 152
BsrGI	TGTACA	2 cut(s)	520, 606
BsrI	ACTGG	1 cut(s)	409
BssAI	RCCGGY	2 cut(s)	140, 152
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	1 cut(s)	45
BssNI	GRCGYC	2 cut(s)	87, 533
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	7 cut(s)	239, 247, 294, 520, 577, 778, 790
Bst6I	CTCTTC	1 cut(s)	582
BstACI	GRCGYC	2 cut(s)	87, 533
BstAUI	TGTACA	2 cut(s)	520, 606
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	4 cut(s)	75, 142, 366, 617
BstDEI	CTNAG	5 cut(s)	69, 116, 276, 372, 420
BstF5I	GGATG	4 cut(s)	19, 393, 810, 873
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	4 cut(s)	43, 135, 168, 540
BstMBI	GATC	1 cut(s)	45
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 74, 479, 761
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	2 cut(s)	459, 759
BstSCI	CCNGG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	751, 754, 835
BstXI	CCANNNNNNTGG	1 cut(s)	751
BsuRI	GGCC	2 cut(s)	77, 255
BtsCI	GGATG	4 cut(s)	19, 393, 810, 873
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	4 cut(s)	75, 142, 366, 617
CaiI	CAGNNNCTG	1 cut(s)	123
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	2 cut(s)	140, 152
Cfr13I	GGNCC	2 cut(s)	211, 593
CseI	GACGC	3 cut(s)	76, 109, 522
Csp6I	GTAC	7 cut(s)	235, 248, 309, 503, 521, 607, 899
CspCI	CAANNNNNGTGG	2 cut(s)	585, 620
CviAII	CATG	5 cut(s)	456, 499, 563, 756, 845
CviQI	GTAC	7 cut(s)	235, 248, 309, 503, 521, 607, 899
DdeI	CTNAG	5 cut(s)	69, 116, 276, 372, 420
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DrdI	GACNNNNNNGTC	1 cut(s)	532
DseDI	GACNNNNNNGTC	1 cut(s)	532
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
EciI	GGCGGA	1 cut(s)	74
Eco147I	AGGCCT	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	657
Eco47I	GGWCC	2 cut(s)	211, 593
Eco57I	CTGAAG	1 cut(s)	337
Eco72I	CACGTG	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	657
Esp3I	CGTCTC	1 cut(s)	540
FaeI	CATG	5 cut(s)	459, 502, 566, 759, 848
FaqI	GGGAC	2 cut(s)	314, 855
FatI	CATG	5 cut(s)	455, 498, 562, 755, 844
FblI	GTMKAC	1 cut(s)	703
Fnu4HI	GCNGC	3 cut(s)	765, 768, 849
FokI	GGATG	4 cut(s)	26, 400, 797, 860
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	3 cut(s)	765, 768, 849
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	3 cut(s)	765, 768, 849
GsuI	CTGGAG	3 cut(s)	191, 289, 471
HaeIII	GGCC	2 cut(s)	77, 255
HapII	CCGG	2 cut(s)	141, 153
HgaI	GACGC	3 cut(s)	76, 109, 522
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	2 cut(s)	87, 533
Hin1II	CATG	5 cut(s)	459, 502, 566, 759, 848
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	4 cut(s)	52, 427, 674, 841
HpaII	CCGG	2 cut(s)	141, 153
HphI	GGTGA	1 cut(s)	920
Hpy166II	GTNNAC	2 cut(s)	596, 704
Hpy188I	TCNGA	3 cut(s)	10, 287, 324
Hpy188III	TCNNGA	6 cut(s)	40, 49, 165, 268, 395, 584
Hpy8I	GTNNAC	2 cut(s)	596, 704
Hpy99I	CGWCG	4 cut(s)	46, 92, 140, 819
HpyAV	CCTTC	3 cut(s)	504, 633, 905
HpyCH4III	ACNGT	7 cut(s)	239, 247, 294, 520, 577, 778, 790
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	5 cut(s)	126, 794, 826, 882, 888
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 74, 479, 761
HpyF3I	CTNAG	5 cut(s)	69, 116, 276, 372, 420
HpySE526I	ACGT	1 cut(s)	598
Hsp92I	GRCGYC	2 cut(s)	87, 533
Hsp92II	CATG	5 cut(s)	459, 502, 566, 759, 848
HspAI	GCGC	1 cut(s)	179
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	4 cut(s)	103, 210, 446, 452
Lsp1109I	GCAGC	3 cut(s)	751, 754, 835
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	5 cut(s)	208, 343, 425, 599, 831
MhlI	GDGCHC	2 cut(s)	322, 657
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	4 cut(s)	313, 334, 465, 693
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	2 cut(s)	421, 850
MmeI	TCCRAC	1 cut(s)	818
Mox20I	TGGCCA	1 cut(s)	77
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	2 cut(s)	692, 696
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	2 cut(s)	173, 424
MspI	CCGG	2 cut(s)	141, 153
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	828
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	4 cut(s)	65, 74, 479, 761
NaeI	GCCGGC	1 cut(s)	142
NdeII	GATC	1 cut(s)	45
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	5 cut(s)	459, 502, 566, 759, 848
NlaIV	GGNNCC	2 cut(s)	99, 594
NspI	RCATGY	2 cut(s)	459, 759
PacI	TTAATTAA	1 cut(s)	696
PceI	AGGCCT	1 cut(s)	255
PctI	GAATGC	1 cut(s)	828
PdiI	GCCGGC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	52, 674
Pfl23II	CGTACG	1 cut(s)	898
PkrI	GCNGC	3 cut(s)	766, 769, 850
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	2 cut(s)	421, 849
PmaCI	CACGTG	1 cut(s)	599
PmlI	CACGTG	1 cut(s)	599
PpsI	GAGTC	2 cut(s)	421, 849
Ppu21I	YACGTR	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	207
PspCI	CACGTG	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	207
PspLI	CGTACG	1 cut(s)	898
PspN4I	GGNNCC	2 cut(s)	99, 594
PspPI	GGNCC	2 cut(s)	211, 593
PstNI	CAGNNNCTG	1 cut(s)	123
PvuI	CGATCG	1 cut(s)	48
PvuII	CAGCTG	2 cut(s)	173, 424
RsaI	GTAC	7 cut(s)	236, 249, 310, 504, 522, 608, 900
RsaNI	GTAC	7 cut(s)	235, 248, 309, 503, 521, 607, 899
SaqAI	TTAA	2 cut(s)	692, 696
SatI	GCNGC	3 cut(s)	765, 768, 849
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	2 cut(s)	211, 593
SchI	GAGTC	2 cut(s)	421, 850
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	322, 657
SetI	ASST	7 cut(s)	75, 175, 213, 359, 426, 451, 601
SfaNI	GCATC	1 cut(s)	406
SgrAI	CRCCGGYG	2 cut(s)	140, 152
SinI	GGWCC	2 cut(s)	211, 593
Sse9I	AATT	4 cut(s)	313, 334, 465, 693
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	3 cut(s)	59, 144, 480
SspI	AATATT	1 cut(s)	381
SspMI	CTAG	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	7 cut(s)	239, 247, 294, 520, 577, 778, 790
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	3 cut(s)	41, 166, 817
TasI	AATT	4 cut(s)	313, 334, 465, 693
TatI	WGTACW	4 cut(s)	234, 247, 520, 606
TfiI	GAWTC	2 cut(s)	52, 674
Tru1I	TTAA	2 cut(s)	692, 696
Tru9I	TTAA	2 cut(s)	692, 696
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	3 cut(s)	764, 767, 848
TspDTI	ATGAA	2 cut(s)	209, 687
TspGWI	ACGGA	2 cut(s)	633, 803
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	211, 593
XceI	RCATGY	2 cut(s)	459, 759
XmiI	GTMKAC	1 cut(s)	703
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.