Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020160.1

Orthogroup ID

OG0002591

Physical Location & Seq

Genomic Coordinates Forward (+)

917 .. 4803

Gene Structure 3887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020160.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgtggtctcctaatgccttcaggtttcctagcctcatcaggattcctgtgttgactgggattcctaccgataaatcgccggaaacactcctcgatcggatcggcgttccggcacgcctagatttccggcgaggcgctgaggttcttctgcctcaatctcgctctctttctttctctttgtggggctttgaaatgtcgtcggaagacgtggccggaaagaggacgagcgaggcggcggtatcgacgattgtgaacctggcggaggaggcgaagctcgccagcgaaggagtcaaggcgcctagccacgccgcgctccttagcatcgctaagtctctcgtcgccggaggagtcgccggaggagtgtcaagaactgctgttgctcccttggaaagactgaaaattttgctccaggttcaaaatcctcatagtattaaatacaatgggacagttcagggcttgaagtatatatggagaactgagggtctcagaggcttgtttaagggcaatggaactaattgtgctcgcatagtcccaaattcagcagtcaagttctttagctatgaagaagcatctaagggtatcctatggttttatcgacagcaaactggaaatggtatgatcatcttgcctctatttcttatgcaagtcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

217

Amino Acids

23.63

Weight (kDa)

9.94

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01100 AT4G01100 AT4G01100
fragaria_vesca	FvH4_5g04080 FvH4_7g16030 FvH4_7g16030 FvH4_7g16030
malus_domestica	MD06G1102400.v1.1 MD07G1145800.v1.1 MD14G1121600.v1.1
prunus_persica	Prupe.2G184000_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1
pyrus_communis	pycom01g10560 pycom06g09720 pycom07g14500
rosa_chinensis	RchiOBHm_Chr1g0358961 RchiOBHm_Chr7g0195421
rosa_laevigata	RLG00000004122 RLG00000027913
rosa_multiflora	Rmu_co7977584.1_g000001 Rmu_sc0008757.1_g000008 Rmu_sc0020160.1_g000001 Rmu_sc0037681.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260500 Rroxscaffold_4G00297510
rosa_rugosa	Rorug01G0266400 Rorug01G0266500 Rorug07G0023100
rosa_samantha	Rh1AG280000 Rh1BG246800 Rh1CG264400 Rh1DG275200 Rh7AG150600 Rh7BG152000 Rh7CG155800 Rh7DG151600
rosa_wichuraiana	Rw1G024890 Rw7G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccII	CGCG	1 cut(s)	311
AciI	CCGC	4 cut(s)	233, 236, 260, 309
AclWI	GGATC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	399, 535
AcuI	CTGAAG	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	219, 262
AgsI	TTSAA	3 cut(s)	191, 416, 460
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	255, 408
AluBI	AGCT	2 cut(s)	274, 558
AluI	AGCT	2 cut(s)	274, 558
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	3 cut(s)	12, 336, 488
AlwI	GGATC	1 cut(s)	107
AoxI	GGCC	1 cut(s)	210
ApoI	RAATTY	2 cut(s)	399, 535
AspLEI	GCGC	3 cut(s)	137, 298, 313
BanI	GGYRCC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	523
BbvCI	CCTCAGC	1 cut(s)	138
BciT130I	CCWGG	2 cut(s)	257, 410
BciVI	GTATCC	1 cut(s)	590
BclI	TGATCA	1 cut(s)	618
BcoDI	GTCTC	3 cut(s)	12, 336, 488
BfaI	CTAG	3 cut(s)	30, 119, 300
BfoI	RGCGCY	2 cut(s)	138, 299
BfuI	GTATCC	1 cut(s)	590
BisI	GCNGC	2 cut(s)	234, 309
BlsI	GCNGC	2 cut(s)	235, 310
Bme1390I	CCNGG	2 cut(s)	257, 410
BmgBI	CACGTC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	2 cut(s)	257, 410
BmrI	ACTGGG	1 cut(s)	66
BmsI	GCATC	2 cut(s)	330, 578
BmuI	ACTGGG	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	392
Bpu10I	CCTNAGC	2 cut(s)	138, 317
BsaHI	GRCGYC	1 cut(s)	296
BsaI	GGTCTC	2 cut(s)	12, 488
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 262
Bse1I	ACTGG	2 cut(s)	61, 610
Bse3DI	GCAATG	1 cut(s)	511
BseBI	CCWGG	2 cut(s)	257, 410
BseDI	CCNNGG	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	219, 262
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	3 cut(s)	129, 468, 499
BseNI	ACTGG	2 cut(s)	61, 610
BseRI	GAGGAG	4 cut(s)	80, 278, 360, 372
Bsh1236I	CGCG	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	212
BshNI	GGYRCC	1 cut(s)	295
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	523
BsiSI	CCGG	6 cut(s)	80, 110, 127, 213, 342, 354
BslFI	GGGAC	2 cut(s)	457, 515
BslI	CCNNNNNNNGG	2 cut(s)	219, 262
BsmAI	GTCTC	3 cut(s)	12, 336, 488
BsmFI	GGGAC	2 cut(s)	457, 515
BsnI	GGCC	1 cut(s)	212
Bso31I	GGTCTC	2 cut(s)	12, 488
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	3 cut(s)	94, 99, 618
BspACI	CCGC	4 cut(s)	233, 236, 260, 309
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	3 cut(s)	130, 469, 498
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	295
BspTNI	GGTCTC	2 cut(s)	12, 488
BsrDI	GCAATG	1 cut(s)	511
BsrI	ACTGG	2 cut(s)	61, 610
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	3 cut(s)	94, 99, 618
BssNI	GRCGYC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	257, 410
Bst4CI	ACNGT	1 cut(s)	448
BstACI	GRCGYC	1 cut(s)	296
BstC8I	GCNNGC	4 cut(s)	115, 276, 280, 523
BstDEI	CTNAG	6 cut(s)	138, 317, 327, 477, 485, 573
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstFNI	CGCG	1 cut(s)	311
BstH2I	RGCGCY	2 cut(s)	138, 299
BstHHI	GCGC	3 cut(s)	137, 298, 313
BstKTI	GATC	3 cut(s)	97, 102, 621
BstMAI	GTCTC	3 cut(s)	12, 336, 488
BstMBI	GATC	3 cut(s)	94, 99, 618
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 275
BstNI	CCWGG	2 cut(s)	257, 410
BstSCI	CCNGG	2 cut(s)	255, 408
BstUI	CGCG	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	212
BtgZI	GCGATG	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	208
Cac8I	GCNNGC	4 cut(s)	115, 276, 280, 523
CfoI	GCGC	3 cut(s)	137, 298, 313
CviJI	RGCY	8 cut(s)	33, 186, 212, 274, 303, 456, 492, 558
CviKI_1	RGCY	8 cut(s)	33, 186, 212, 274, 303, 456, 492, 558
DdeI	CTNAG	6 cut(s)	138, 317, 327, 477, 485, 573
DinI	GGCGCC	1 cut(s)	297
DpnI	GATC	3 cut(s)	96, 101, 620
DpnII	GATC	3 cut(s)	94, 99, 618
EaeI	YGGCCR	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	384
Eco31I	GGTCTC	2 cut(s)	12, 488
Eco57I	CTGAAG	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	255, 408
EcoT14I	CCWWGG	1 cut(s)	384
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	384
FaiI	YATR	9 cut(s)	426, 465, 467, 469, 527, 561, 586, 617, 641
FaqI	GGGAC	2 cut(s)	457, 515
FbaI	TGATCA	1 cut(s)	618
Fnu4HI	GCNGC	2 cut(s)	234, 309
Fsp4HI	GCNGC	2 cut(s)	234, 309
FspBI	CTAG	3 cut(s)	30, 119, 300
GlaI	GCGC	3 cut(s)	136, 297, 312
GluI	GCNGC	2 cut(s)	234, 309
GsuI	CTGGAG	1 cut(s)	392
HaeII	RGCGCY	2 cut(s)	138, 299
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	6 cut(s)	80, 110, 127, 213, 342, 354
HhaI	GCGC	3 cut(s)	137, 298, 313
Hin1I	GRCGYC	1 cut(s)	296
Hin6I	GCGC	3 cut(s)	135, 296, 311
HinP1I	GCGC	3 cut(s)	135, 296, 311
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	4 cut(s)	43, 61, 288, 348
HpaII	CCGG	6 cut(s)	80, 110, 127, 213, 342, 354
Hpy166II	GTNNAC	2 cut(s)	54, 253
Hpy188I	TCNGA	3 cut(s)	99, 202, 488
Hpy188III	TCNNGA	2 cut(s)	40, 366
Hpy8I	GTNNAC	2 cut(s)	54, 253
Hpy99I	CGWCG	3 cut(s)	202, 247, 341
HpyAV	CCTTC	2 cut(s)	28, 278
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 275
HpyF3I	CTNAG	6 cut(s)	138, 317, 327, 477, 485, 573
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	296
HspAI	GCGC	3 cut(s)	135, 296, 311
KasI	GGCGCC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	618
Kzo9I	GATC	3 cut(s)	94, 99, 618
LmnI	GCTCC	3 cut(s)	318, 385, 411
LweI	GCATC	2 cut(s)	330, 578
MaeI	CTAG	3 cut(s)	30, 119, 300
MaeII	ACGT	1 cut(s)	207
MalI	GATC	3 cut(s)	96, 101, 620
MboI	GATC	3 cut(s)	94, 99, 618
MboII	GAAGA	3 cut(s)	137, 215, 575
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	4 cut(s)	399, 514, 535, 649
Mly113I	GGCGCC	1 cut(s)	296
MlyI	GAGTC	2 cut(s)	297, 357
MmeI	TCCRAC	1 cut(s)	180
MseI	TTAA	2 cut(s)	432, 498
MspI	CCGG	6 cut(s)	80, 110, 127, 213, 342, 354
MspR9I	CCNGG	2 cut(s)	257, 410
MvaI	CCWGG	2 cut(s)	257, 410
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	266, 275
NarI	GGCGCC	1 cut(s)	296
NdeII	GATC	3 cut(s)	94, 99, 618
NlaIV	GGNNCC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	43, 61
PkrI	GCNGC	2 cut(s)	235, 310
Ple19I	CGATCG	1 cut(s)	97
PleI	GAGTC	2 cut(s)	296, 356
PluTI	GGCGCC	1 cut(s)	299
PpsI	GAGTC	2 cut(s)	296, 356
Psp6I	CCWGG	2 cut(s)	255, 408
PspGI	CCWGG	2 cut(s)	255, 408
PspN4I	GGNNCC	1 cut(s)	297
PvuI	CGATCG	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	432, 498
SatI	GCNGC	2 cut(s)	234, 309
Sau3AI	GATC	3 cut(s)	94, 99, 618
SchI	GAGTC	2 cut(s)	297, 357
ScrFI	CCNGG	2 cut(s)	257, 410
SduI	GDGCHC	1 cut(s)	523
SetI	ASST	7 cut(s)	26, 144, 210, 258, 276, 414, 560
SfaNI	GCATC	2 cut(s)	330, 578
SfoI	GGCGCC	1 cut(s)	297
Sse9I	AATT	4 cut(s)	399, 514, 535, 649
SsiI	CCGC	4 cut(s)	233, 236, 260, 309
SspDI	GGCGCC	1 cut(s)	295
SspMI	CTAG	3 cut(s)	30, 119, 300
StyD4I	CCNGG	2 cut(s)	255, 408
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	93, 242, 595
TasI	AATT	4 cut(s)	399, 514, 535, 649
TauI	GCSGC	2 cut(s)	236, 311
TfiI	GAWTC	2 cut(s)	43, 61
Tru1I	TTAA	2 cut(s)	432, 498
Tru9I	TTAA	2 cut(s)	432, 498
TspDTI	ATGAA	1 cut(s)	576
XagI	CCTNNNNNAGG	1 cut(s)	260
XapI	RAATTY	2 cut(s)	399, 535
XspI	CTAG	3 cut(s)	30, 119, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.