Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002591

Physical Location & Seq

Genomic Coordinates Reverse (-)

16423471 .. 16428957

Gene Structure 5487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCTTCGGAGGATGTGAAACCAAGCGAATCGGCGGTCTCGACGATCGTCAACCTGGCTGAGGAGGCGAAGATGGCGAGGGAGGGCGTGGTCAAGGCTCCGAACCTCGCGTTGCTCAGCGTCTGCAAGTCTCTCGTTGCTGGCGGAGTCGCCGGTGGAGTGTCACGCACGGCTGTTGCTCCATTGGAACGACTGAAAATTTTGCTTCAGGTCCAGAATCCACATAACATAAAATACAATGGAACGATACAGGGCTTGAAGTATATCTGGAGAAGTGAGGGTTTCCGTGGATTATTTAAAGGGAATGGTACAAATTGTGCTCGTATTGTCCCCAACTCAGCTGTCAAGTTCTTCAGCTATGAGCAAGCTTCCAAGGGAATATTGTGGCTGTATCGGGATCAAACTGGCAATGAAGATGCTCAGCTCACTCCTATCCTACGTCTTGGAGCTGGAGCATGTGCTGGAATTATTGCTATGTCTGCAACTTACCCAATGGACATGGTACGAGGAAGGATAACTGTGCAGACAGAGAATTCTCCCTTTCAGTACAGGGGAATGTTCCATGCCCTATCGACTGTGCTCCGGGAGGAGGGCCCACGGGCTTTGTACAAGGGCTGGCTTCCTTCTGTTATTGGAGTTGTTCCATATGTTGGTCTCAACTTTGCTGTGTATGAATCCCTAAAGGATTGGTTAATCAAAAGTAGGCCATTTGGACTTGTTCAAGATACAGATTTGAGCGTGACAACAAGGTTGGCATGCGGGGCTGCTGCTGGAACTGTTGGGCAAACTGTTGCTTATCCTCTTGATGTCATTCGTCGAAGGATGCAGATGGGGGGATGGAGCCATGCTGCTTCTGTTGTCAGTGGTGATGGGATAAGCAAGGCCCCACTTGAGTATACTGGCATGATTGATGCATTTAGGAAAACTGTTCGTCATGAGGGCTTTGGTGCATTGTACAAGGGTTTGGTTCCCAACTCTGTTAAGGTAGTCCCATCCATTGCGCTTGCATTTGTGACGTATGAGATGGTGAAGGACGTTTTAGGAGTCGATCGATCAGGATATCGGACTGATATTGCGGGAGGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

363

Amino Acids

39.01

Weight (kDa)

9.45

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01100 AT4G01100 AT4G01100
fragaria_vesca	FvH4_5g04080 FvH4_7g16030 FvH4_7g16030 FvH4_7g16030
malus_domestica	MD06G1102400.v1.1 MD07G1145800.v1.1 MD14G1121600.v1.1
prunus_persica	Prupe.2G184000_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1
pyrus_communis	pycom01g10560 pycom06g09720 pycom07g14500
rosa_chinensis	RchiOBHm_Chr1g0358961 RchiOBHm_Chr7g0195421
rosa_laevigata	RLG00000004122 RLG00000027913
rosa_multiflora	Rmu_co7977584.1_g000001 Rmu_sc0008757.1_g000008 Rmu_sc0020160.1_g000001 Rmu_sc0037681.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260500 Rroxscaffold_4G00297510
rosa_rugosa	Rorug01G0266400 Rorug01G0266500 Rorug07G0023100
rosa_samantha	Rh1AG280000 Rh1BG246800 Rh1CG264400 Rh1DG275200 Rh7AG150600 Rh7BG152000 Rh7CG155800 Rh7DG151600
rosa_wichuraiana	Rw1G024890 Rw7G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	650
AccI	GTMKAC	1 cut(s)	896
AccII	CGCG	1 cut(s)	110
AciI	CCGC	4 cut(s)	35, 144, 759, 1076
AclWI	GGATC	1 cut(s)	405
AcsI	RAATTY	2 cut(s)	198, 532
AcuI	CTGAAG	2 cut(s)	191, 337
AfaI	GTAC	5 cut(s)	310, 504, 548, 608, 956
AfiI	CCNNNNNNNGG	3 cut(s)	61, 589, 650
AgsI	TTSAA	2 cut(s)	259, 722
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	5 cut(s)	341, 357, 368, 424, 449
AluI	AGCT	5 cut(s)	341, 357, 368, 424, 449
Alw21I	GWGCWC	2 cut(s)	322, 582
Alw26I	GTCTC	3 cut(s)	43, 135, 659
AlwI	GGATC	1 cut(s)	405
AlwNI	CAGNNNCTG	1 cut(s)	123
AoxI	GGCC	3 cut(s)	592, 704, 882
ApaI	GGGCCC	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	764, 767, 848
ApoI	RAATTY	2 cut(s)	198, 532
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspLEI	GCGC	1 cut(s)	1003
AspS9I	GGNCC	5 cut(s)	211, 592, 593, 883, 1082
AsuC2I	CCSGG	1 cut(s)	584
AsuHPI	GGTGA	2 cut(s)	878, 1039
AvaII	GGWCC	2 cut(s)	211, 1082
BaeGI	GKGCMC	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	596
Bbv12I	GWGCWC	2 cut(s)	322, 582
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	751, 754, 835
BccI	CCATC	6 cut(s)	67, 823, 831, 863, 1000, 1018
BceAI	ACGGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	584
BcoDI	GTCTC	3 cut(s)	43, 135, 659
BisI	GCNGC	3 cut(s)	765, 768, 849
BlpI	GCTNAGC	2 cut(s)	116, 420
BlsI	GCNGC	3 cut(s)	766, 769, 850
Bme1390I	CCNGG	2 cut(s)	56, 584
Bme18I	GGWCC	2 cut(s)	211, 1082
BmgT120I	GGNCC	5 cut(s)	211, 592, 593, 883, 1082
BmiI	GGNNCC	5 cut(s)	99, 594, 842, 885, 969
BmrFI	CCNGG	2 cut(s)	56, 584
BmsI	GCATC	3 cut(s)	406, 813, 901
BoxI	GACNNNNGTC	1 cut(s)	47
BpmI	CTGGAG	2 cut(s)	289, 471
Bpu10I	CCTNAGC	1 cut(s)	60
Bpu1102I	GCTNAGC	2 cut(s)	116, 420
BpuEI	CTTGAG	1 cut(s)	911
BpuMI	CCSGG	1 cut(s)	584
Bsa29I	ATCGAT	1 cut(s)	1051
BsaI	GGTCTC	2 cut(s)	43, 659
BsaJI	CCNNGG	3 cut(s)	286, 372, 596
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 589, 650
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	409, 904
Bse3DI	GCAATG	2 cut(s)	415, 996
BseBI	CCWGG	1 cut(s)	56
BseCI	ATCGAT	1 cut(s)	1051
BseDI	CCNNGG	3 cut(s)	286, 372, 596
BseGI	GGATG	4 cut(s)	19, 828, 842, 992
BseLI	CCNNNNNNNGG	3 cut(s)	61, 589, 650
BseMI	GCAATG	2 cut(s)	415, 996
BseMII	CTCAG	4 cut(s)	51, 130, 351, 434
BseNI	ACTGG	2 cut(s)	409, 904
BseRI	GAGGAG	2 cut(s)	77, 602
BseSI	GKGCMC	1 cut(s)	596
BseXI	GCAGC	3 cut(s)	751, 754, 835
BsgI	GTGCAG	1 cut(s)	542
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	2 cut(s)	48, 1051
BshFI	GGCC	3 cut(s)	594, 706, 884
BshVI	ATCGAT	1 cut(s)	1051
BsiEI	CGRYCG	2 cut(s)	48, 1051
BsiHKAI	GWGCWC	2 cut(s)	322, 582
BsiSI	CCGG	2 cut(s)	153, 583
BslFI	GGGAC	2 cut(s)	314, 974
BslI	CCNNNNNNNGG	3 cut(s)	61, 589, 650
BsmAI	GTCTC	3 cut(s)	43, 135, 659
BsmFI	GGGAC	2 cut(s)	314, 974
BsnI	GGCC	3 cut(s)	594, 706, 884
Bso31I	GGTCTC	2 cut(s)	43, 659
Bsp120I	GGGCCC	1 cut(s)	592
Bsp1286I	GDGCHC	3 cut(s)	322, 582, 596
Bsp1407I	TGTACA	2 cut(s)	606, 954
Bsp143I	GATC	4 cut(s)	45, 397, 1048, 1052
Bsp1720I	GCTNAGC	2 cut(s)	116, 420
BspACI	CCGC	4 cut(s)	35, 144, 759, 1076
BspANI	GGCC	3 cut(s)	594, 706, 884
BspCNI	CTCAG	4 cut(s)	52, 129, 350, 433
BspDI	ATCGAT	1 cut(s)	1051
BspFNI	CGCG	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	934
BspLI	GGNNCC	5 cut(s)	99, 594, 842, 885, 969
BspPI	GGATC	1 cut(s)	405
BspTNI	GGTCTC	2 cut(s)	43, 659
BsrDI	GCAATG	2 cut(s)	415, 996
BsrFI	RCCGGY	1 cut(s)	152
BsrGI	TGTACA	2 cut(s)	606, 954
BsrI	ACTGG	2 cut(s)	409, 904
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	286, 372, 596
BssMI	GATC	4 cut(s)	45, 397, 1048, 1052
BssNAI	GTATAC	1 cut(s)	897
BssT1I	CCWWGG	1 cut(s)	372
Bst1107I	GTATAC	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	5 cut(s)	520, 577, 778, 790, 928
BstAUI	TGTACA	2 cut(s)	606, 954
BstC8I	GCNNGC	5 cut(s)	142, 366, 617, 757, 1005
BstDEI	CTNAG	4 cut(s)	60, 116, 337, 420
BstDSI	CCRYGG	2 cut(s)	286, 596
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	4 cut(s)	19, 828, 842, 992
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	1003
BstKTI	GATC	4 cut(s)	48, 400, 1051, 1055
BstMAI	GTCTC	3 cut(s)	43, 135, 659
BstMBI	GATC	4 cut(s)	45, 397, 1048, 1052
BstMCI	CGRYCG	2 cut(s)	48, 1051
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 74, 479, 761
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	2 cut(s)	459, 759
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	54, 582
BstSLI	GKGCMC	1 cut(s)	596
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	751, 754, 835
BstZ17I	GTATAC	1 cut(s)	897
Bsu15I	ATCGAT	1 cut(s)	1051
BsuRI	GGCC	3 cut(s)	594, 706, 884
BsuTUI	ATCGAT	1 cut(s)	1051
BtgI	CCRYGG	2 cut(s)	286, 596
BtsCI	GGATG	4 cut(s)	19, 828, 842, 992
BtsIMutI	CAGTG	1 cut(s)	868
Cac8I	GCNNGC	5 cut(s)	142, 366, 617, 757, 1005
CaiI	CAGNNNCTG	1 cut(s)	123
CciI	TCATGA	1 cut(s)	934
CfoI	GCGC	1 cut(s)	1003
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	5 cut(s)	211, 592, 593, 883, 1082
ClaI	ATCGAT	1 cut(s)	1051
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	5 cut(s)	309, 503, 547, 607, 955
CspCI	CAANNNNNGTGG	2 cut(s)	585, 620
CviAII	CATG	8 cut(s)	456, 499, 563, 756, 845, 904, 935, 1086
CviQI	GTAC	5 cut(s)	309, 503, 547, 607, 955
DdeI	CTNAG	4 cut(s)	60, 116, 337, 420
DpnI	GATC	4 cut(s)	47, 399, 1050, 1054
DpnII	GATC	4 cut(s)	45, 397, 1048, 1052
DraI	TTTAAA	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	596
Eco31I	GGTCTC	2 cut(s)	43, 659
Eco32I	GATATC	1 cut(s)	1061
Eco47I	GGWCC	2 cut(s)	211, 1082
Eco57I	CTGAAG	2 cut(s)	191, 337
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	2 cut(s)	592, 883
EcoRI	GAATTC	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	1061
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	916
EcoT38I	GRGCYC	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	8 cut(s)	459, 502, 566, 759, 848, 907, 938, 1089
FaqI	GGGAC	2 cut(s)	314, 974
FatI	CATG	8 cut(s)	455, 498, 562, 755, 844, 903, 934, 1085
FauI	CCCGC	2 cut(s)	752, 1069
FauNDI	CATATG	1 cut(s)	646
FblI	GTMKAC	1 cut(s)	896
Fnu4HI	GCNGC	3 cut(s)	765, 768, 849
FokI	GGATG	4 cut(s)	26, 835, 849, 979
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	3 cut(s)	765, 768, 849
GlaI	GCGC	1 cut(s)	1002
GluI	GCNGC	3 cut(s)	765, 768, 849
GsuI	CTGGAG	2 cut(s)	289, 471
HaeIII	GGCC	3 cut(s)	594, 706, 884
HapII	CCGG	2 cut(s)	153, 583
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	1003
Hin1II	CATG	8 cut(s)	459, 502, 566, 759, 848, 907, 938, 1089
Hin6I	GCGC	1 cut(s)	1001
HinP1I	GCGC	1 cut(s)	1001
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	5 cut(s)	29, 147, 217, 674, 1044
HpaII	CCGG	2 cut(s)	153, 583
HphI	GGTGA	2 cut(s)	878, 1039
Hpy166II	GTNNAC	2 cut(s)	52, 897
Hpy188I	TCNGA	3 cut(s)	10, 102, 1065
Hpy188III	TCNNGA	8 cut(s)	40, 214, 268, 395, 722, 803, 935, 1056
Hpy8I	GTNNAC	2 cut(s)	52, 897
Hpy99I	CGWCG	2 cut(s)	46, 819
HpyAV	CCTTC	4 cut(s)	504, 633, 813, 1024
HpyCH4III	ACNGT	5 cut(s)	520, 577, 778, 790, 928
HpyCH4IV	ACGT	3 cut(s)	439, 1016, 1035
HpyCH4V	TGCA	7 cut(s)	126, 482, 523, 826, 914, 950, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 74, 479, 761
HpyF3I	CTNAG	4 cut(s)	60, 116, 337, 420
HpySE526I	ACGT	3 cut(s)	439, 1016, 1035
Hsp92II	CATG	8 cut(s)	459, 502, 566, 759, 848, 907, 938, 1089
HspAI	GCGC	1 cut(s)	1001
Kzo9I	GATC	4 cut(s)	45, 397, 1048, 1052
LmnI	GCTCC	6 cut(s)	103, 184, 446, 452, 585, 840
Lsp1109I	GCAGC	3 cut(s)	751, 754, 835
LweI	GCATC	3 cut(s)	406, 813, 901
MaeII	ACGT	3 cut(s)	439, 1016, 1035
MaeIII	GTNAC	3 cut(s)	162, 739, 1012
MalI	GATC	4 cut(s)	47, 399, 1050, 1054
MboI	GATC	4 cut(s)	45, 397, 1048, 1052
MboII	GAAGA	3 cut(s)	82, 343, 425
MhlI	GDGCHC	3 cut(s)	322, 582, 596
MluCI	AATT	4 cut(s)	198, 313, 465, 532
MlyI	GAGTC	2 cut(s)	156, 1053
Mph1103I	ATGCAT	1 cut(s)	916
MseI	TTAA	3 cut(s)	297, 692, 981
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	153, 583
MspR9I	CCNGG	2 cut(s)	56, 584
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	4 cut(s)	65, 74, 479, 761
NciI	CCSGG	1 cut(s)	584
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	4 cut(s)	45, 397, 1048, 1052
NlaIII	CATG	8 cut(s)	459, 502, 566, 759, 848, 907, 938, 1089
NlaIV	GGNNCC	5 cut(s)	99, 594, 842, 885, 969
NmuCI	GTSAC	3 cut(s)	162, 739, 1012
NsiI	ATGCAT	1 cut(s)	916
NspI	RCATGY	2 cut(s)	459, 759
PaeI	GCATGC	1 cut(s)	759
PagI	TCATGA	1 cut(s)	934
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	29, 217, 674
PflMI	CCANNNNNTGG	1 cut(s)	650
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	3 cut(s)	766, 769, 850
Ple19I	CGATCG	2 cut(s)	48, 1051
PleI	GAGTC	2 cut(s)	155, 1052
PpsI	GAGTC	2 cut(s)	155, 1052
PshAI	GACNNNNGTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	5 cut(s)	99, 594, 842, 885, 969
PspOMI	GGGCCC	1 cut(s)	592
PspPI	GGNCC	5 cut(s)	211, 592, 593, 883, 1082
PstNI	CAGNNNCTG	1 cut(s)	123
PvuI	CGATCG	2 cut(s)	48, 1051
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	5 cut(s)	310, 504, 548, 608, 956
RsaNI	GTAC	5 cut(s)	309, 503, 547, 607, 955
SaqAI	TTAA	3 cut(s)	297, 692, 981
SatI	GCNGC	3 cut(s)	765, 768, 849
Sau3AI	GATC	4 cut(s)	45, 397, 1048, 1052
Sau96I	GGNCC	5 cut(s)	211, 592, 593, 883, 1082
SchI	GAGTC	2 cut(s)	156, 1053
ScrFI	CCNGG	2 cut(s)	56, 584
SduI	GDGCHC	3 cut(s)	322, 582, 596
SfaNI	GCATC	3 cut(s)	406, 813, 901
SgrAI	CRCCGGYG	1 cut(s)	152
SinI	GGWCC	2 cut(s)	211, 1082
SmlI	CTYRAG	1 cut(s)	890
SmoI	CTYRAG	1 cut(s)	890
SphI	GCATGC	1 cut(s)	759
Sse9I	AATT	4 cut(s)	198, 313, 465, 532
SsiI	CCGC	4 cut(s)	35, 144, 759, 1076
SspI	AATATT	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	54, 582
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	5 cut(s)	520, 577, 778, 790, 928
TaiI	ACGT	3 cut(s)	442, 1019, 1038
TaqI	TCGA	5 cut(s)	41, 572, 817, 1047, 1051
TasI	AATT	4 cut(s)	198, 313, 465, 532
TatI	WGTACW	3 cut(s)	546, 606, 954
TfiI	GAWTC	3 cut(s)	29, 217, 674
Tru1I	TTAA	3 cut(s)	297, 692, 981
Tru9I	TTAA	3 cut(s)	297, 692, 981
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	3 cut(s)	162, 739, 1012
TseI	GCWGC	3 cut(s)	764, 767, 848
Tsp45I	GTSAC	3 cut(s)	162, 739, 1012
TspDTI	ATGAA	2 cut(s)	426, 687
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	868
Van91I	CCANNNNNTGG	1 cut(s)	650
VpaK11BI	GGWCC	2 cut(s)	211, 1082
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	2 cut(s)	198, 532
XceI	RCATGY	2 cut(s)	459, 759
XmiI	GTMKAC	1 cut(s)	896
Zsp2I	ATGCAT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.