Rroxscaffold_3G00260500

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
54901268 .. 54904935
3668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260500.1

Sequence Viewer

Length: 1116 bp
ATGTCGTCGGAAGACGTGGCCGGAAAGAGGACGAGCGAGACGGCGGTATCGACGATTGTGAACCTGGCGGAGGAGGCGAAGCTCGCCAGCGAAGGAGTCAAGGCGCCTAGCCACGCCGCGCTCCTTAGCATCGCTAAGTCTCTCGTCGCCGGAGGAGTCGCCGGAGGAGTGTCAAGAACTGCTGTTGCTCCCTTGGAAAGACTGAAAATTTTGCTCCAGGTTCAAAATCCTCATAGTATTAAATACAATGGGACAGTTCAGGGCTTGAAGTATATATGGAGATCTGAGGGTCTCAGAGGCTTGTTTAAGGGCAATGGAACTAATTGTGCTCGCATAGTCCCAAATTCAGCGGTCAAGTTCTTTAGCTATGAAGAAGCATCTAAGTATGATCTGGTTCCTGCTCCTCCATTCCCCTACAGGGTATCCTATGGTTTTATCGACAGCAAACTGGAAATGATTTCCTTCAATCTCTTGCAGAAAATGCTCAACTCACACCTCTTTTTGCGCCTCGGAGCTGGTGCATGTGCTGGAATTATTGCAATGTCAGCAACTTACCCGATGGACATGGTACGAGGGCGTCTAACTGTGCAGACGGAAAACTCTCCTCGGCATTATAGGGGAATATTTCATGCTCTTTCAACTGTCTTTCGGGAAGAGGGACCTAGGGCTCTGTACAAAGGCTGGCTACCTTCTGTCATTGGAGTTATACCATATGTTGGTCTCAATTTTGCCGTTTATGAATCTTTGAAAGATTGGTTGATCAAAACTAGACCTTTCGGACTAGTTCAAGACACTGAGTTGAGTATAACTACAAAGCTTGCATGTGGGGCTGCAGCTGGAACTGTTGGCCAGACGGTTGCTTACCCTCTTGATGTCGTTCGGCGAAGAATGCAGATGGTAGGCTGGAAGAATGCCGCTTCGGTTGTCACTGGGGATGGGAAGAGCAAAGCAGCCCTTGAATATACTGGTATGGTTGATACATTCAGGAAAACAGTTCGTCATGAGGGGTTTGGGGCACTGTACAAGGGTTTGGTCCCCAATTCTGTTAAGGTGGTGCCTTCCATAGCAATTGCCTTTGTCACATATGAGGTAGTGAAGGATGTTCTTGGGAGTTGA

Protein Analysis

371

Amino Acids

40.14

Weight (kDa)

9.64

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 43 - 128 3.9e-24 Mitochondrial carrier protein
Mito_carr PF00153 166 - 255 2.4e-27 Mitochondrial carrier protein
Mito_carr PF00153 267 - 369 2.1e-25 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 103, 1054
AccB7I CCANNNNNTGG 1 cut(s) 716
AccII CGCG 1 cut(s) 119
AciI CCGC 5 cut(s) 44, 68, 117, 350, 915
AcoI YGGCCR 2 cut(s) 18, 847
AcsI RAATTY 2 cut(s) 207, 343
AcyI GRCGYC 2 cut(s) 104, 577
AfaI GTAC 3 cut(s) 570, 674, 1022
AfiI CCNNNNNNNGG 4 cut(s) 27, 70, 418, 716
AgsI TTSAA 7 cut(s) 224, 268, 466, 639, 748, 788, 959
AhlI ACTAGT 1 cut(s) 781
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 2 cut(s) 63, 216
AluBI AGCT 5 cut(s) 82, 366, 515, 817, 836
AluI AGCT 5 cut(s) 82, 366, 515, 817, 836
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 4 cut(s) 32, 144, 296, 725
AoxI GGCC 2 cut(s) 18, 847
ApeKI GCWGC 3 cut(s) 830, 833, 950
ApoI RAATTY 2 cut(s) 207, 343
AspA2I CCTAGG 1 cut(s) 662
AspLEI GCGC 3 cut(s) 106, 121, 507
AspS9I GGNCC 2 cut(s) 659, 1033
AvaII GGWCC 2 cut(s) 659, 1033
AvrII CCTAGG 1 cut(s) 662
BaeGI GKGCMC 1 cut(s) 1018
BaeI ACNNNNGTAYC 2 cut(s) 30, 63
BalI TGGCCA 1 cut(s) 849
BanI GGYRCC 2 cut(s) 103, 1054
BanII GRGCYC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 3 cut(s) 817, 845, 962
BccI CCATC 3 cut(s) 553, 889, 929
BceAI ACGGC 2 cut(s) 57, 716
BciT130I CCWGG 2 cut(s) 65, 218
BciVI GTATCC 1 cut(s) 433
BclI TGATCA 1 cut(s) 759
BcoDI GTCTC 4 cut(s) 32, 144, 296, 725
BcuI ACTAGT 1 cut(s) 781
BfaI CTAG 4 cut(s) 108, 663, 768, 782
BfmI CTRYAG 2 cut(s) 415, 831
BfoI RGCGCY 1 cut(s) 107
BfuI GTATCC 1 cut(s) 433
BglII AGATCT 1 cut(s) 281
BisI GCNGC 5 cut(s) 117, 831, 834, 915, 951
BlnI CCTAGG 1 cut(s) 662
BlsI GCNGC 5 cut(s) 118, 832, 835, 916, 952
Bme1390I CCNGG 2 cut(s) 65, 218
Bme18I GGWCC 2 cut(s) 659, 1033
BmgBI CACGTC 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 659, 1033
BmiI GGNNCC 5 cut(s) 105, 396, 660, 1035, 1056
BmrFI CCNGG 2 cut(s) 65, 218
BmrI ACTGGG 1 cut(s) 939
BmsI GCATC 2 cut(s) 138, 386
BmuI ACTGGG 1 cut(s) 939
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 125
BsaHI GRCGYC 2 cut(s) 104, 577
BsaI GGTCTC 2 cut(s) 296, 725
BsaJI CCNNGG 4 cut(s) 192, 508, 605, 662
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 70, 418, 716
Bse1I ACTGG 3 cut(s) 453, 934, 970
Bse3DI GCAATG 2 cut(s) 319, 546
BseBI CCWGG 2 cut(s) 65, 218
BseDI CCNNGG 4 cut(s) 192, 508, 605, 662
BseGI GGATG 2 cut(s) 940, 1105
BseLI CCNNNNNNNGG 4 cut(s) 27, 70, 418, 716
BseMI GCAATG 2 cut(s) 319, 546
BseMII CTCAG 3 cut(s) 276, 307, 786
BseNI ACTGG 3 cut(s) 453, 934, 970
BseRI GAGGAG 5 cut(s) 86, 168, 180, 393, 594
BseSI GKGCMC 1 cut(s) 1018
BseXI GCAGC 3 cut(s) 817, 845, 962
BsgI GTGCAG 1 cut(s) 608
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 20, 849
BshNI GGYRCC 2 cut(s) 103, 1054
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 3 cut(s) 21, 150, 162
BslFI GGGAC 4 cut(s) 265, 323, 672, 1019
BslI CCNNNNNNNGG 4 cut(s) 27, 70, 418, 716
BsmAI GTCTC 4 cut(s) 32, 144, 296, 725
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 4 cut(s) 265, 323, 672, 1019
BsmI GAATGC 2 cut(s) 894, 916
BsnI GGCC 2 cut(s) 20, 849
Bso31I GGTCTC 2 cut(s) 296, 725
Bsp1286I GDGCHC 3 cut(s) 331, 670, 1018
Bsp1407I TGTACA 2 cut(s) 672, 1020
Bsp143I GATC 3 cut(s) 281, 388, 759
BspACI CCGC 5 cut(s) 44, 68, 117, 350, 915
BspANI GGCC 2 cut(s) 20, 849
BspCNI CTCAG 3 cut(s) 277, 306, 787
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 1000
BspLI GGNNCC 5 cut(s) 105, 396, 660, 1035, 1056
BspMAI CTGCAG 1 cut(s) 835
BspQI GCTCTTC 1 cut(s) 935
BspT107I GGYRCC 2 cut(s) 103, 1054
BspTNI GGTCTC 2 cut(s) 296, 725
BsrDI GCAATG 2 cut(s) 319, 546
BsrGI TGTACA 2 cut(s) 672, 1020
BsrI ACTGG 3 cut(s) 453, 934, 970
BssECI CCNNGG 4 cut(s) 192, 508, 605, 662
BssMI GATC 3 cut(s) 281, 388, 759
BssNI GRCGYC 2 cut(s) 104, 577
BssT1I CCWWGG 2 cut(s) 192, 662
Bst2UI CCWGG 2 cut(s) 65, 218
Bst4CI ACNGT 7 cut(s) 256, 586, 643, 844, 856, 994, 1020
Bst6I CTCTTC 2 cut(s) 648, 935
BstACI GRCGYC 2 cut(s) 104, 577
BstAPI GCANNNNNTGC 1 cut(s) 481
BstAUI TGTACA 2 cut(s) 672, 1020
BstC8I GCNNGC 5 cut(s) 84, 88, 331, 683, 819
BstDEI CTNAG 6 cut(s) 125, 135, 285, 293, 381, 795
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 940, 1105
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 3 cut(s) 106, 121, 507
BstKTI GATC 3 cut(s) 284, 391, 762
BstMAI GTCTC 4 cut(s) 32, 144, 296, 725
BstMBI GATC 3 cut(s) 281, 388, 759
BstMWI GCNNNNNNNGC 6 cut(s) 74, 83, 481, 545, 827, 889
BstNI CCWGG 2 cut(s) 65, 218
BstNSI RCATGY 2 cut(s) 525, 825
BstSCI CCNGG 2 cut(s) 63, 216
BstSFI CTRYAG 2 cut(s) 415, 831
BstSLI GKGCMC 1 cut(s) 1018
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 3 cut(s) 817, 845, 962
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 2 cut(s) 20, 849
BtgZI GCGATG 1 cut(s) 115
BtrI CACGTC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 940, 1105
BtsIMutI CAGTG 3 cut(s) 792, 927, 1016
Cac8I GCNNGC 5 cut(s) 84, 88, 331, 683, 819
CciI TCATGA 1 cut(s) 1000
CfoI GCGC 3 cut(s) 106, 121, 507
Cfr13I GGNCC 2 cut(s) 659, 1033
CseI GACGC 1 cut(s) 566
Csp6I GTAC 3 cut(s) 569, 673, 1021
CviAII CATG 5 cut(s) 522, 565, 629, 822, 1001
CviQI GTAC 3 cut(s) 569, 673, 1021
DdeI CTNAG 6 cut(s) 125, 135, 285, 293, 381, 795
DinI GGCGCC 1 cut(s) 105
DpnI GATC 3 cut(s) 283, 390, 761
DpnII GATC 3 cut(s) 281, 388, 759
EaeI YGGCCR 2 cut(s) 18, 847
Eam1104I CTCTTC 2 cut(s) 648, 935
EarI CTCTTC 2 cut(s) 648, 935
EciI GGCGGA 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 192, 662
Eco24I GRGCYC 1 cut(s) 670
Eco31I GGTCTC 2 cut(s) 296, 725
Eco47I GGWCC 2 cut(s) 659, 1033
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 659
EcoRII CCWGG 2 cut(s) 63, 216
EcoT14I CCWWGG 2 cut(s) 192, 662
EcoT38I GRGCYC 1 cut(s) 670
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 192, 662
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 5 cut(s) 525, 568, 632, 825, 1004
FalI AAGNNNNNCTT 2 cut(s) 939, 971
FaqI GGGAC 4 cut(s) 265, 323, 672, 1019
FatI CATG 5 cut(s) 521, 564, 628, 821, 1000
FauNDI CATATG 2 cut(s) 712, 1084
FbaI TGATCA 1 cut(s) 759
Fnu4HI GCNGC 5 cut(s) 117, 831, 834, 915, 951
FokI GGATG 2 cut(s) 947, 1112
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 5 cut(s) 117, 831, 834, 915, 951
FspBI CTAG 4 cut(s) 108, 663, 768, 782
GlaI GCGC 3 cut(s) 105, 120, 506
GluI GCNGC 5 cut(s) 117, 831, 834, 915, 951
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 2 cut(s) 20, 849
HapII CCGG 3 cut(s) 21, 150, 162
HgaI GACGC 1 cut(s) 566
HhaI GCGC 3 cut(s) 106, 121, 507
Hin1I GRCGYC 2 cut(s) 104, 577
Hin1II CATG 5 cut(s) 525, 568, 632, 825, 1004
Hin6I GCGC 3 cut(s) 104, 119, 505
HinP1I GCGC 3 cut(s) 104, 119, 505
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 3 cut(s) 96, 156, 740
HpaII CCGG 3 cut(s) 21, 150, 162
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 5 cut(s) 10, 286, 296, 512, 779
Hpy188III TCNNGA 6 cut(s) 174, 650, 788, 869, 985, 1001
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 3 cut(s) 10, 55, 149
HpyAV CCTTC 5 cut(s) 86, 472, 699, 1068, 1090
HpyCH4III ACNGT 7 cut(s) 256, 586, 643, 844, 856, 994, 1020
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 7 cut(s) 475, 521, 539, 589, 821, 833, 892
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 83, 481, 545, 827, 889
HpyF3I CTNAG 6 cut(s) 125, 135, 285, 293, 381, 795
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 2 cut(s) 104, 577
Hsp92II CATG 5 cut(s) 525, 568, 632, 825, 1004
HspAI GCGC 3 cut(s) 104, 119, 505
KasI GGCGCC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 759
Kzo9I GATC 3 cut(s) 281, 388, 759
LguI GCTCTTC 1 cut(s) 935
LmnI GCTCC 5 cut(s) 126, 193, 219, 406, 512
Lsp1109I GCAGC 3 cut(s) 817, 845, 962
LweI GCATC 2 cut(s) 138, 386
MaeI CTAG 4 cut(s) 108, 663, 768, 782
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 925, 1078
MalI GATC 3 cut(s) 283, 390, 761
MboI GATC 3 cut(s) 281, 388, 759
MboII GAAGA 6 cut(s) 23, 383, 665, 897, 919, 952
MfeI CAATTG 1 cut(s) 1068
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 3 cut(s) 331, 670, 1018
MlsI TGGCCA 1 cut(s) 849
MluCI AATT 7 cut(s) 207, 322, 343, 531, 724, 1039, 1068
MluNI TGGCCA 1 cut(s) 849
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 2 cut(s) 105, 165
Mox20I TGGCCA 1 cut(s) 849
MscI TGGCCA 1 cut(s) 849
MseI TTAA 3 cut(s) 240, 306, 1047
Msp20I TGGCCA 1 cut(s) 849
MspA1I CMGCKG 2 cut(s) 350, 836
MspI CCGG 3 cut(s) 21, 150, 162
MspR9I CCNGG 2 cut(s) 65, 218
MunI CAATTG 1 cut(s) 1068
Mva1269I GAATGC 2 cut(s) 894, 916
MvaI CCWGG 2 cut(s) 65, 218
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 6 cut(s) 74, 83, 481, 545, 827, 889
NarI GGCGCC 1 cut(s) 104
NdeI CATATG 2 cut(s) 712, 1084
NdeII GATC 3 cut(s) 281, 388, 759
NlaIII CATG 5 cut(s) 525, 568, 632, 825, 1004
NlaIV GGNNCC 5 cut(s) 105, 396, 660, 1035, 1056
NmeAIII GCCGAG 1 cut(s) 586
NmuCI GTSAC 2 cut(s) 925, 1078
NspI RCATGY 2 cut(s) 525, 825
PagI TCATGA 1 cut(s) 1000
PciSI GCTCTTC 1 cut(s) 935
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PctI GAATGC 2 cut(s) 894, 916
PfeI GAWTC 1 cut(s) 740
PflMI CCANNNNNTGG 1 cut(s) 716
PkrI GCNGC 5 cut(s) 118, 832, 835, 916, 952
PleI GAGTC 2 cut(s) 104, 164
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 2 cut(s) 104, 164
PpuMI RGGWCCY 1 cut(s) 659
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 2 cut(s) 63, 216
PspGI CCWGG 2 cut(s) 63, 216
PspN4I GGNNCC 5 cut(s) 105, 396, 660, 1035, 1056
PspPI GGNCC 2 cut(s) 659, 1033
PspPPI RGGWCCY 1 cut(s) 659
PstI CTGCAG 1 cut(s) 835
PsuI RGATCY 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 836
RsaI GTAC 3 cut(s) 570, 674, 1022
RsaNI GTAC 3 cut(s) 569, 673, 1021
SapI GCTCTTC 1 cut(s) 935
SaqAI TTAA 3 cut(s) 240, 306, 1047
SatI GCNGC 5 cut(s) 117, 831, 834, 915, 951
Sau3AI GATC 3 cut(s) 281, 388, 759
Sau96I GGNCC 2 cut(s) 659, 1033
SchI GAGTC 2 cut(s) 105, 165
ScrFI CCNGG 2 cut(s) 65, 218
SduI GDGCHC 3 cut(s) 331, 670, 1018
SfaNI GCATC 2 cut(s) 138, 386
SfcI CTRYAG 2 cut(s) 415, 831
SfoI GGCGCC 1 cut(s) 105
SinI GGWCC 2 cut(s) 659, 1033
SpeI ACTAGT 1 cut(s) 781
Sse9I AATT 7 cut(s) 207, 322, 343, 531, 724, 1039, 1068
SsiI CCGC 5 cut(s) 44, 68, 117, 350, 915
SspDI GGCGCC 1 cut(s) 103
SspI AATATT 1 cut(s) 624
SspMI CTAG 4 cut(s) 108, 663, 768, 782
StyD4I CCNGG 2 cut(s) 63, 216
StyI CCWWGG 2 cut(s) 192, 662
TaaI ACNGT 7 cut(s) 256, 586, 643, 844, 856, 994, 1020
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 50, 438
TasI AATT 7 cut(s) 207, 322, 343, 531, 724, 1039, 1068
TatI WGTACW 2 cut(s) 672, 1020
TauI GCSGC 2 cut(s) 119, 917
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 3 cut(s) 240, 306, 1047
Tru9I TTAA 3 cut(s) 240, 306, 1047
TscAI CASTG 3 cut(s) 799, 934, 1023
TseFI GTSAC 2 cut(s) 925, 1078
TseI GCWGC 3 cut(s) 830, 833, 950
Tsp45I GTSAC 2 cut(s) 925, 1078
TspDTI ATGAA 3 cut(s) 384, 617, 753
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 3 cut(s) 799, 934, 1023
Van91I CCANNNNNTGG 1 cut(s) 716
VpaK11BI GGWCC 2 cut(s) 659, 1033
XagI CCTNNNNNAGG 1 cut(s) 68
XapI RAATTY 2 cut(s) 207, 343
XceI RCATGY 2 cut(s) 525, 825
XmaJI CCTAGG 1 cut(s) 662
XspI CTAG 4 cut(s) 108, 663, 768, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.