Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002591

Physical Location & Seq

Genomic Coordinates Reverse (-)

52838602 .. 52842583

Gene Structure 3982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG264400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCTTCGGAGGATGTGAAACGGAGCGAAACGGCGGTCTCGACGATCGTGAATCTGGCCGAGGAGGCTAAGCTGGCGAGAGAGGGCGTCGTGAAGGCTCCCAGCCTCGCCGTTCTCAGCGTCTGCAAGTCTCTCGTCGCCGGCGGAGTCGCCGGGGGAGTGTCTCGAACAGCTGTTGCGCCATTGGAACGAATGAAAATATTGCTCCAGGTCCAAAATCCCCATAACATAAAATACAGTGGAACAGTACAAGGCCTGAAATATATCTGGAGAAGTGAGGGTTTCCGTGGACTGTTTAAAGGAAATGGTACCAATTGTGCTCGGATTGTCCCCAACTCAGCTGTCAAATTCTTCAGCTACGAGCAAGCTTCTAAGGGAATATTGTGGATGTATCGGGAGAAAACTGGCAACGAAGATGCTCAGCTCACTCCTCTTCTACGACTTGGAGCTGGAGCATGTGCTGGAATTATTGCTATGTCCGCAACTTACCCAATGGACATGGTACGGGGAAGGATTACCGTACAGACAGAGTCGTCTCCCTATCAGTATAGAGGAATGTTCCATGCTCTATCAACTGTGCTTCGGGAGGAGGGTCCACGTGCTTTGTACAAGGGCTGGCTTCCTTCCGTAATTGGAGTTGTTCCGTATGTTGGACTCAACTTTGCTGTGTATGAATCCCTAAAGGATTGGTTAATTAAAAGTAGACCATTTGGACTTGTCCAAGATACAGATTTGAGCGTGACAACACGATTGGCTTGTGGGGCCGCTGCTGGAACTGTCGGGCAGACTGTTGCTTACCCACTTGATGTCATCCGTCGAAGAATGCAGATGGTGGGTTGGAGTCATGCTGCTTCCGTTGTCGCTGGTGAGGGGAGAAGCAAGGCACCACTTGAATATACTGGCATGGTTGATGCATTTAGGAAAACTGTTCGACACGAGGGCTTTGGTGCATTGTACAAGGGTTTGGTTCCCAATTCTGTTAAGGTCAGTTTAAATCTTCTATCTCATGATACGTCTATAGATGAGTGTAGGTTGAACCATTATTTGAGGTCTTCAGCTATGTCTCTACGAACAATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

360

Amino Acids

39.19

Weight (kDa)

9.65

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	39 - 126	1.6e-24	Mitochondrial carrier protein
Mito_carr	PF00153	142 - 234	4.2e-28	Mitochondrial carrier protein
Mito_carr	PF00153	245 - 331	1.6e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01100 AT4G01100 AT4G01100
fragaria_vesca	FvH4_5g04080 FvH4_7g16030 FvH4_7g16030 FvH4_7g16030
malus_domestica	MD06G1102400.v1.1 MD07G1145800.v1.1 MD14G1121600.v1.1
prunus_persica	Prupe.2G184000_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1 Prupe.5G115400_v2.0.a1
pyrus_communis	pycom01g10560 pycom06g09720 pycom07g14500
rosa_chinensis	RchiOBHm_Chr1g0358961 RchiOBHm_Chr7g0195421
rosa_laevigata	RLG00000004122 RLG00000027913
rosa_multiflora	Rmu_co7977584.1_g000001 Rmu_sc0008757.1_g000008 Rmu_sc0020160.1_g000001 Rmu_sc0037681.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260500 Rroxscaffold_4G00297510
rosa_rugosa	Rorug01G0266400 Rorug01G0266500 Rorug07G0023100
rosa_samantha	Rh1AG280000 Rh1BG246800 Rh1CG264400 Rh1DG275200 Rh7AG150600 Rh7BG152000 Rh7CG155800 Rh7DG151600
rosa_wichuraiana	Rw1G024890 Rw7G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	532
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	2 cut(s)	308, 883
AccI	GTMKAC	1 cut(s)	703
AciI	CCGC	4 cut(s)	35, 144, 480, 765
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	2 cut(s)	337, 1038
AcvI	CACGTG	1 cut(s)	599
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	6 cut(s)	249, 310, 504, 522, 608, 956
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	2 cut(s)	893, 1036
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	8 cut(s)	73, 173, 341, 357, 368, 424, 449, 1058
AluI	AGCT	8 cut(s)	73, 173, 341, 357, 368, 424, 449, 1058
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	5 cut(s)	43, 135, 168, 540, 1068
AlwNI	CAGNNNCTG	1 cut(s)	123
AoxI	GGCC	3 cut(s)	57, 253, 762
ApeKI	GCWGC	2 cut(s)	767, 848
ApoI	RAATTY	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
Asp718I	GGTACC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	3 cut(s)	211, 593, 762
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	878
AvaII	GGWCC	2 cut(s)	211, 593
BanI	GGYRCC	2 cut(s)	308, 883
BauI	CACGAG	1 cut(s)	935
BbrPI	CACGTG	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	1044
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	754, 835
BccI	CCATC	1 cut(s)	823
BceAI	ACGGC	2 cut(s)	48, 95
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	5 cut(s)	43, 135, 168, 540, 1068
BfmI	CTRYAG	1 cut(s)	1017
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	3 cut(s)	765, 768, 849
BlpI	GCTNAGC	2 cut(s)	69, 420
BlsI	GCNGC	3 cut(s)	766, 769, 850
Bme1390I	CCNGG	2 cut(s)	154, 209
Bme18I	GGWCC	2 cut(s)	211, 593
BmgT120I	GGNCC	3 cut(s)	211, 593, 762
BmiI	GGNNCC	6 cut(s)	99, 310, 594, 763, 885, 969
BmrFI	CCNGG	2 cut(s)	154, 209
BmsI	GCATC	2 cut(s)	406, 901
BpiI	GAAGAC	1 cut(s)	1044
BpmI	CTGGAG	3 cut(s)	191, 289, 471
Bpu1102I	GCTNAGC	2 cut(s)	69, 420
BpuMI	CCSGG	1 cut(s)	154
BsaAI	YACGTR	1 cut(s)	599
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	60, 153, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	409, 904
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	60, 153, 286
BseGI	GGATG	3 cut(s)	19, 393, 810
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMII	CTCAG	3 cut(s)	130, 351, 434
BseNI	ACTGG	2 cut(s)	409, 904
BseRI	GAGGAG	3 cut(s)	77, 420, 602
BseXI	GCAGC	2 cut(s)	754, 835
BseYI	CCCAGC	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	59, 255, 764
BshNI	GGYRCC	2 cut(s)	308, 883
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	141, 153
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	5 cut(s)	43, 135, 168, 540, 1068
BsmBI	CGTCTC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	3 cut(s)	59, 255, 764
Bso31I	GGTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp1407I	TGTACA	2 cut(s)	606, 954
Bsp143I	GATC	1 cut(s)	45
Bsp1720I	GCTNAGC	2 cut(s)	69, 420
BspACI	CCGC	4 cut(s)	35, 144, 480, 765
BspANI	GGCC	3 cut(s)	59, 255, 764
BspCNI	CTCAG	3 cut(s)	129, 350, 433
BspHI	TCATGA	1 cut(s)	1006
BspLI	GGNNCC	6 cut(s)	99, 310, 594, 763, 885, 969
BspT107I	GGYRCC	2 cut(s)	308, 883
BspTNI	GGTCTC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	2 cut(s)	606, 954
BsrI	ACTGG	2 cut(s)	409, 904
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	60, 153, 286
BssMI	GATC	1 cut(s)	45
BssNI	GRCGYC	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	935
Bst2BI	CACGAG	1 cut(s)	935
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	8 cut(s)	239, 247, 294, 520, 577, 778, 790, 928
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	87
BstAUI	TGTACA	2 cut(s)	606, 954
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	4 cut(s)	75, 142, 366, 617
BstDEI	CTNAG	5 cut(s)	69, 116, 337, 372, 420
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	19, 393, 810
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	5 cut(s)	43, 135, 168, 540, 1068
BstMBI	GATC	1 cut(s)	45
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 74, 479, 761
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	152, 207
BstSFI	CTRYAG	1 cut(s)	1017
BstV1I	GCAGC	2 cut(s)	754, 835
BstV2I	GAAGAC	1 cut(s)	1044
BsuRI	GGCC	3 cut(s)	59, 255, 764
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	3 cut(s)	19, 393, 810
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	4 cut(s)	75, 142, 366, 617
CaiI	CAGNNNCTG	1 cut(s)	123
CciI	TCATGA	1 cut(s)	1006
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	211, 593, 762
CseI	GACGC	2 cut(s)	76, 109
Csp6I	GTAC	6 cut(s)	248, 309, 503, 521, 607, 955
CspCI	CAANNNNNGTGG	2 cut(s)	585, 620
CviAII	CATG	6 cut(s)	456, 499, 563, 845, 904, 1007
CviQI	GTAC	6 cut(s)	248, 309, 503, 521, 607, 955
DdeI	CTNAG	5 cut(s)	69, 116, 337, 372, 420
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DraI	TTTAAA	2 cut(s)	298, 993
DrdI	GACNNNNNNGTC	1 cut(s)	532
DseDI	GACNNNNNNGTC	1 cut(s)	532
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	2 cut(s)	211, 593
Eco57I	CTGAAG	2 cut(s)	337, 1038
Eco72I	CACGTG	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	916
Esp3I	CGTCTC	1 cut(s)	540
FaeI	CATG	6 cut(s)	459, 502, 566, 848, 907, 1010
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	6 cut(s)	455, 498, 562, 844, 903, 1006
FblI	GTMKAC	1 cut(s)	703
Fnu4HI	GCNGC	3 cut(s)	765, 768, 849
FokI	GGATG	3 cut(s)	26, 400, 797
Fsp4HI	GCNGC	3 cut(s)	765, 768, 849
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	3 cut(s)	765, 768, 849
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	3 cut(s)	191, 289, 471
HaeIII	GGCC	3 cut(s)	59, 255, 764
HapII	CCGG	2 cut(s)	141, 153
HgaI	GACGC	2 cut(s)	76, 109
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	6 cut(s)	459, 502, 566, 848, 907, 1010
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	6 cut(s)	52, 147, 530, 654, 674, 841
HpaII	CCGG	2 cut(s)	141, 153
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	3 cut(s)	290, 596, 704
Hpy188I	TCNGA	3 cut(s)	10, 324, 1082
Hpy188III	TCNNGA	8 cut(s)	40, 49, 91, 165, 268, 395, 584, 1007
Hpy8I	GTNNAC	3 cut(s)	290, 596, 704
Hpy99I	CGWCG	4 cut(s)	46, 92, 140, 819
HpyAV	CCTTC	3 cut(s)	88, 504, 633
HpyCH4III	ACNGT	8 cut(s)	239, 247, 294, 520, 577, 778, 790, 928
HpyCH4IV	ACGT	2 cut(s)	598, 1013
HpyCH4V	TGCA	4 cut(s)	126, 826, 914, 950
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 74, 479, 761
HpyF3I	CTNAG	5 cut(s)	69, 116, 337, 372, 420
HpySE526I	ACGT	2 cut(s)	598, 1013
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	6 cut(s)	459, 502, 566, 848, 907, 1010
HspAI	GCGC	1 cut(s)	179
KpnI	GGTACC	1 cut(s)	312
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	5 cut(s)	24, 103, 210, 446, 452
Lsp1109I	GCAGC	2 cut(s)	754, 835
LweI	GCATC	2 cut(s)	406, 901
MaeII	ACGT	2 cut(s)	598, 1013
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	6 cut(s)	343, 425, 425, 831, 989, 1044
MfeI	CAATTG	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	7 cut(s)	313, 347, 465, 630, 693, 973, 1074
MlyI	GAGTC	4 cut(s)	156, 539, 648, 850
MmeI	TCCRAC	2 cut(s)	631, 818
Mph1103I	ATGCAT	1 cut(s)	916
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	1 cut(s)	140
MseI	TTAA	5 cut(s)	297, 692, 696, 981, 992
MspA1I	CMGCKG	3 cut(s)	173, 341, 767
MspI	CCGG	2 cut(s)	141, 153
MspR9I	CCNGG	2 cut(s)	154, 209
MunI	CAATTG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	828
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	4 cut(s)	65, 74, 479, 761
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	45
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	6 cut(s)	459, 502, 566, 848, 907, 1010
NlaIV	GGNNCC	6 cut(s)	99, 310, 594, 763, 885, 969
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	739
NsiI	ATGCAT	1 cut(s)	916
NspI	RCATGY	1 cut(s)	459
PacI	TTAATTAA	1 cut(s)	696
PagI	TCATGA	1 cut(s)	1006
PceI	AGGCCT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	1 cut(s)	828
PdiI	GCCGGC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	52, 674
PflFI	GACNNNGTC	1 cut(s)	529
PkrI	GCNGC	3 cut(s)	766, 769, 850
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	4 cut(s)	155, 538, 648, 849
PmaCI	CACGTG	1 cut(s)	599
PmlI	CACGTG	1 cut(s)	599
PpsI	GAGTC	4 cut(s)	155, 538, 648, 849
Ppu21I	YACGTR	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	207
PspCI	CACGTG	1 cut(s)	599
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	6 cut(s)	99, 310, 594, 763, 885, 969
PspPI	GGNCC	3 cut(s)	211, 593, 762
PstNI	CAGNNNCTG	1 cut(s)	123
PsyI	GACNNNGTC	1 cut(s)	529
PvuI	CGATCG	1 cut(s)	48
PvuII	CAGCTG	2 cut(s)	173, 341
RsaI	GTAC	6 cut(s)	249, 310, 504, 522, 608, 956
RsaNI	GTAC	6 cut(s)	248, 309, 503, 521, 607, 955
SaqAI	TTAA	5 cut(s)	297, 692, 696, 981, 992
SatI	GCNGC	3 cut(s)	765, 768, 849
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	3 cut(s)	211, 593, 762
SchI	GAGTC	4 cut(s)	156, 539, 648, 850
ScrFI	CCNGG	2 cut(s)	154, 209
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	406, 901
SfcI	CTRYAG	1 cut(s)	1017
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	211, 593
Sse9I	AATT	7 cut(s)	313, 347, 465, 630, 693, 973, 1074
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	4 cut(s)	35, 144, 480, 765
SspI	AATATT	2 cut(s)	201, 381
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	152, 207
TaaI	ACNGT	8 cut(s)	239, 247, 294, 520, 577, 778, 790, 928
TaiI	ACGT	2 cut(s)	601, 1016
TaqI	TCGA	4 cut(s)	41, 166, 817, 931
TasI	AATT	7 cut(s)	313, 347, 465, 630, 693, 973, 1074
TatI	WGTACW	3 cut(s)	247, 606, 954
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	2 cut(s)	52, 674
Tru1I	TTAA	5 cut(s)	297, 692, 696, 981, 992
Tru9I	TTAA	5 cut(s)	297, 692, 696, 981, 992
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	739
TseI	GCWGC	2 cut(s)	767, 848
Tsp45I	GTSAC	1 cut(s)	739
TspDTI	ATGAA	2 cut(s)	209, 687
TspGWI	ACGGA	6 cut(s)	37, 275, 616, 633, 803, 844
TspRI	CASTG	1 cut(s)	244
Tth111I	GACNNNGTC	1 cut(s)	529
VpaK11BI	GGWCC	2 cut(s)	211, 593
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	703
Zsp2I	ATGCAT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.